Ggra3109.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3109.t1
Unique Name	Ggra3109.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:165082..166572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3109	Ggra3109	Gracilaria gracilis GNS1m male	gene	tig00000120_pilon 165082..166572 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3109.t1.start1	Ggra3109.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000120_pilon 165082..165084 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3109.t1.CDS1	Ggra3109.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000120_pilon 165082..166572 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3109.t1.exon1	Ggra3109.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000120_pilon 165082..166572 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3109.t1.stop1	Ggra3109.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000120_pilon 166570..166572 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3109.t1	Ggra3109.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000120_pilon 165082..166572 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:165082..166572+
coding sequence from alignment at tig00000120_pilon:165082..166572+

mRNA sequence

>Ggra3109.t1 ID=Ggra3109.t1|Name=Ggra3109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=497bp
MAPRQIYQDDKALDKLLDNLLHTAQSDNIGTSTASSSHSRNHLSQSSIRE
KLTVASGLLQEGKVCSGLPNLQDDDSNVKDVLSEALAAVIHLCKCCKANS
NLRNEAERSVYAVNEELLRVKRLNELKMEKISRLDTKIATMKKQASDAEK
EKKHTVSGLTTECADLKTKCARSTYRVNHLSLEVKKREREYSLLQQKVQA
LMTNTKRLSIEPQIVAIVANNATKSHCISREKSLEREETEYQDLVDLSED
QCMNEVITENRALRDLLRAVQEELDDLFISNPNLFDDSKTPANMASNQDS
PISRVKDMGTKSDQSSSSETPSPMRQTTSDDAKQAPPVDEKLESQPQLSK
RSSVEIGNQECVDQPCTEKMREERIEPCEQPKTPTELRSNPESHSDEVGE
SESGEGDPHQVPCQEETSLSPASIADAEVGTPVTGSPERNGAFLNNLTPA
LSAEQMNLPFDMIRENLERSLDQKFELLRLAMQQVGKTMCHSGARA*

spliced messenger RNA

>Ggra3109.t1 ID=Ggra3109.t1|Name=Ggra3109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000120_pilon:165082..166572+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCGAGGCAGATTTATCAAGATGACAAAGCCCTTGACAAACTACT
CGACAACTTGCTTCACACCGCTCAGAGTGACAACATCGGCACATCTACTG
CATCAAGCTCTCACTCACGGAATCACTTATCGCAATCGAGTATTAGAGAA
AAACTGACTGTGGCCAGTGGGCTTCTCCAGGAGGGCAAAGTTTGTTCGGG
GCTACCAAACCTCCAGGACGATGACAGCAACGTCAAGGACGTTCTTTCGG
AGGCCTTGGCAGCAGTCATTCACCTCTGCAAATGTTGCAAAGCCAATTCC
AATCTGCGAAACGAAGCGGAACGCTCGGTTTACGCTGTCAATGAGGAGCT
CCTCCGGGTTAAGCGATTGAATGAACTAAAGATGGAAAAAATCTCCCGCT
TGGATACGAAGATTGCGACAATGAAGAAACAAGCAAGTGATGCTGAAAAG
GAGAAGAAGCATACCGTATCTGGCCTAACGACAGAGTGTGCTGATCTCAA
GACCAAGTGTGCAAGGTCAACATACCGTGTCAACCACTTGTCCTTGGAAG
TCAAGAAGCGCGAACGGGAGTACAGTCTCTTGCAGCAAAAAGTGCAAGCT
CTAATGACAAACACTAAGCGATTGAGTATTGAGCCCCAGATTGTTGCCAT
TGTCGCAAACAACGCCACCAAATCGCACTGTATAAGCCGTGAAAAATCTC
TTGAAAGGGAAGAAACAGAATACCAAGACTTGGTAGATTTGTCTGAGGAC
CAATGTATGAATGAGGTCATCACTGAAAACAGAGCTCTTCGAGACCTACT
CCGCGCCGTGCAAGAAGAACTTGATGACCTGTTCATCAGTAATCCAAATC
TGTTCGACGACTCAAAGACTCCTGCAAATATGGCTTCGAACCAAGATAGC
CCAATCAGCAGGGTAAAGGATATGGGAACAAAATCTGATCAATCTTCAAG
TTCTGAAACCCCATCTCCAATGAGACAGACGACTTCGGACGACGCAAAAC
AAGCCCCACCTGTTGATGAAAAATTGGAATCTCAACCGCAACTAAGTAAG
CGAAGCTCTGTAGAAATAGGAAACCAAGAATGTGTCGACCAGCCATGTAC
CGAGAAAATGAGAGAGGAAAGAATCGAGCCGTGTGAGCAACCGAAGACTC
CAACTGAACTCAGAAGCAATCCAGAATCGCATTCAGATGAAGTTGGCGAA
AGCGAAAGTGGGGAAGGTGATCCGCATCAGGTACCATGCCAAGAGGAGAC
GTCACTGAGTCCTGCAAGCATAGCAGATGCTGAAGTGGGAACTCCAGTCA
CGGGTAGTCCTGAACGAAATGGAGCGTTTCTCAATAATTTGACTCCCGCT
CTTAGTGCGGAGCAAATGAACCTTCCATTTGACATGATCCGCGAAAACCT
CGAGCGCAGCCTAGATCAGAAGTTCGAGCTCTTGCGTCTTGCCATGCAGC
AAGTTGGTAAAACCATGTGCCACAGTGGAGCAAGGGCTTGA

protein sequence of Ggra3109.t1

>Ggra3109.t1 ID=Ggra3109.t1|Name=Ggra3109.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=497bp
MAPRQIYQDDKALDKLLDNLLHTAQSDNIGTSTASSSHSRNHLSQSSIRE
KLTVASGLLQEGKVCSGLPNLQDDDSNVKDVLSEALAAVIHLCKCCKANS
NLRNEAERSVYAVNEELLRVKRLNELKMEKISRLDTKIATMKKQASDAEK
EKKHTVSGLTTECADLKTKCARSTYRVNHLSLEVKKREREYSLLQQKVQA
LMTNTKRLSIEPQIVAIVANNATKSHCISREKSLEREETEYQDLVDLSED
QCMNEVITENRALRDLLRAVQEELDDLFISNPNLFDDSKTPANMASNQDS
PISRVKDMGTKSDQSSSSETPSPMRQTTSDDAKQAPPVDEKLESQPQLSK
RSSVEIGNQECVDQPCTEKMREERIEPCEQPKTPTELRSNPESHSDEVGE
SESGEGDPHQVPCQEETSLSPASIADAEVGTPVTGSPERNGAFLNNLTPA
LSAEQMNLPFDMIRENLERSLDQKFELLRLAMQQVGKTMCHSGARA*

mRNA from alignment at tig00000120_pilon:165082..166572+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3109.t1 ID=Ggra3109.t1|Name=Ggra3109.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000120_pilon:165082..166572+ (Gracilaria gracilis GNS1m male)
ATGGCCCCGAGGCAGATTTATCAAGATGACAAAGCCCTTGACAAACTACT
CGACAACTTGCTTCACACCGCTCAGAGTGACAACATCGGCACATCTACTG
CATCAAGCTCTCACTCACGGAATCACTTATCGCAATCGAGTATTAGAGAA
AAACTGACTGTGGCCAGTGGGCTTCTCCAGGAGGGCAAAGTTTGTTCGGG
GCTACCAAACCTCCAGGACGATGACAGCAACGTCAAGGACGTTCTTTCGG
AGGCCTTGGCAGCAGTCATTCACCTCTGCAAATGTTGCAAAGCCAATTCC
AATCTGCGAAACGAAGCGGAACGCTCGGTTTACGCTGTCAATGAGGAGCT
CCTCCGGGTTAAGCGATTGAATGAACTAAAGATGGAAAAAATCTCCCGCT
TGGATACGAAGATTGCGACAATGAAGAAACAAGCAAGTGATGCTGAAAAG
GAGAAGAAGCATACCGTATCTGGCCTAACGACAGAGTGTGCTGATCTCAA
GACCAAGTGTGCAAGGTCAACATACCGTGTCAACCACTTGTCCTTGGAAG
TCAAGAAGCGCGAACGGGAGTACAGTCTCTTGCAGCAAAAAGTGCAAGCT
CTAATGACAAACACTAAGCGATTGAGTATTGAGCCCCAGATTGTTGCCAT
TGTCGCAAACAACGCCACCAAATCGCACTGTATAAGCCGTGAAAAATCTC
TTGAAAGGGAAGAAACAGAATACCAAGACTTGGTAGATTTGTCTGAGGAC
CAATGTATGAATGAGGTCATCACTGAAAACAGAGCTCTTCGAGACCTACT
CCGCGCCGTGCAAGAAGAACTTGATGACCTGTTCATCAGTAATCCAAATC
TGTTCGACGACTCAAAGACTCCTGCAAATATGGCTTCGAACCAAGATAGC
CCAATCAGCAGGGTAAAGGATATGGGAACAAAATCTGATCAATCTTCAAG
TTCTGAAACCCCATCTCCAATGAGACAGACGACTTCGGACGACGCAAAAC
AAGCCCCACCTGTTGATGAAAAATTGGAATCTCAACCGCAACTAAGTAAG
CGAAGCTCTGTAGAAATAGGAAACCAAGAATGTGTCGACCAGCCATGTAC
CGAGAAAATGAGAGAGGAAAGAATCGAGCCGTGTGAGCAACCGAAGACTC
CAACTGAACTCAGAAGCAATCCAGAATCGCATTCAGATGAAGTTGGCGAA
AGCGAAAGTGGGGAAGGTGATCCGCATCAGGTACCATGCCAAGAGGAGAC
GTCACTGAGTCCTGCAAGCATAGCAGATGCTGAAGTGGGAACTCCAGTCA
CGGGTAGTCCTGAACGAAATGGAGCGTTTCTCAATAATTTGACTCCCGCT
CTTAGTGCGGAGCAAATGAACCTTCCATTTGACATGATCCGCGAAAACCT
CGAGCGCAGCCTAGATCAGAAGTTCGAGCTCTTGCGTCTTGCCATGCAGC
AAGTTGGTAAAACCATGTGCCACAGTGGAGCAAGGGCTTGA

Coding sequence (CDS) from alignment at tig00000120_pilon:165082..166572+

>Ggra3109.t1 ID=Ggra3109.t1|Name=Ggra3109.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00000120_pilon:165082..166572+ (Gracilaria gracilis GNS1m male)
ATGGCCCCGAGGCAGATTTATCAAGATGACAAAGCCCTTGACAAACTACT
CGACAACTTGCTTCACACCGCTCAGAGTGACAACATCGGCACATCTACTG
CATCAAGCTCTCACTCACGGAATCACTTATCGCAATCGAGTATTAGAGAA
AAACTGACTGTGGCCAGTGGGCTTCTCCAGGAGGGCAAAGTTTGTTCGGG
GCTACCAAACCTCCAGGACGATGACAGCAACGTCAAGGACGTTCTTTCGG
AGGCCTTGGCAGCAGTCATTCACCTCTGCAAATGTTGCAAAGCCAATTCC
AATCTGCGAAACGAAGCGGAACGCTCGGTTTACGCTGTCAATGAGGAGCT
CCTCCGGGTTAAGCGATTGAATGAACTAAAGATGGAAAAAATCTCCCGCT
TGGATACGAAGATTGCGACAATGAAGAAACAAGCAAGTGATGCTGAAAAG
GAGAAGAAGCATACCGTATCTGGCCTAACGACAGAGTGTGCTGATCTCAA
GACCAAGTGTGCAAGGTCAACATACCGTGTCAACCACTTGTCCTTGGAAG
TCAAGAAGCGCGAACGGGAGTACAGTCTCTTGCAGCAAAAAGTGCAAGCT
CTAATGACAAACACTAAGCGATTGAGTATTGAGCCCCAGATTGTTGCCAT
TGTCGCAAACAACGCCACCAAATCGCACTGTATAAGCCGTGAAAAATCTC
TTGAAAGGGAAGAAACAGAATACCAAGACTTGGTAGATTTGTCTGAGGAC
CAATGTATGAATGAGGTCATCACTGAAAACAGAGCTCTTCGAGACCTACT
CCGCGCCGTGCAAGAAGAACTTGATGACCTGTTCATCAGTAATCCAAATC
TGTTCGACGACTCAAAGACTCCTGCAAATATGGCTTCGAACCAAGATAGC
CCAATCAGCAGGGTAAAGGATATGGGAACAAAATCTGATCAATCTTCAAG
TTCTGAAACCCCATCTCCAATGAGACAGACGACTTCGGACGACGCAAAAC
AAGCCCCACCTGTTGATGAAAAATTGGAATCTCAACCGCAACTAAGTAAG
CGAAGCTCTGTAGAAATAGGAAACCAAGAATGTGTCGACCAGCCATGTAC
CGAGAAAATGAGAGAGGAAAGAATCGAGCCGTGTGAGCAACCGAAGACTC
CAACTGAACTCAGAAGCAATCCAGAATCGCATTCAGATGAAGTTGGCGAA
AGCGAAAGTGGGGAAGGTGATCCGCATCAGGTACCATGCCAAGAGGAGAC
GTCACTGAGTCCTGCAAGCATAGCAGATGCTGAAGTGGGAACTCCAGTCA
CGGGTAGTCCTGAACGAAATGGAGCGTTTCTCAATAATTTGACTCCCGCT
CTTAGTGCGGAGCAAATGAACCTTCCATTTGACATGATCCGCGAAAACCT
CGAGCGCAGCCTAGATCAGAAGTTCGAGCTCTTGCGTCTTGCCATGCAGC
AAGTTGGTAAAACCATGTGCCACAGTGGAGCAAGGGCTTGA