Ggra3056.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3056.t1
Unique NameGgra3056.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000094_piloncontigtig00000094_pilon:392584..393683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07236
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue3.2e-11
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3056Ggra3056Gracilaria gracilis GNS1m malegenetig00000094_pilon 392584..393683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3056.t1Ggra3056.t1Gracilaria gracilis GNS1m malepolypeptidetig00000094_pilon 392584..393683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3056.t1.stop1Ggra3056.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000094_pilon 392584..392586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3056.t1.CDS1Ggra3056.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000094_pilon 392584..393011 -
Ggra3056.t1.CDS2Ggra3056.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000094_pilon 393062..393439 -
Ggra3056.t1.CDS3Ggra3056.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000094_pilon 393590..393683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3056.t1.exon1Ggra3056.t1.exon1Gracilaria gracilis GNS1m maleexontig00000094_pilon 392584..393011 -
Ggra3056.t1.exon2Ggra3056.t1.exon2Gracilaria gracilis GNS1m maleexontig00000094_pilon 393062..393439 -
Ggra3056.t1.exon3Ggra3056.t1.exon3Gracilaria gracilis GNS1m maleexontig00000094_pilon 393590..393683 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3056.t1.intron1Ggra3056.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000094_pilon 393012..393061 -
Ggra3056.t1.intron2Ggra3056.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000094_pilon 393440..393589 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3056.t1.start1Ggra3056.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000094_pilon 393681..393683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3056.t1 ID=Ggra3056.t1|Name=Ggra3056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MTRKYGLISIKLPRFATRKSRRSGCGLLGILDALTDVSVDAGDIPHIYLA
GVGAADRICSSFEYKPRVYLYTSWLQHLFRANQRLGGVQIEVPERTLEAE
YRAMYMLSIPRNPTENACLYRNRTVSGDGLAPIPSQDKEPESSVEADESD
EDEGEEPPGPSTFSTAKEEAVFEEEKDAELARESNKKCFPALDTVQLDNG
QRIPMSRLQIGHRELVAPDVFSPVFMFTHKLNNIVSDFVHIRTHSGDRLS
VSALHFIYLDSKLIPAANAAIVQHVQLEEGTVSTVSQVSVVQHSGLYNP*
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spliced messenger RNA

>Ggra3056.t1 ID=Ggra3056.t1|Name=Ggra3056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000094_pilon:392584..393683- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGAAAGTATGGTTTAATATCTATCAAACTGCCACGCTTCGCAAC
ACGGAAATCTCGAAGAAGTGGATGTGGGTTGTTGGGGATTCTTGATGCTC
TCACTGATGTCAGTGTCGACGCTGGTGACATCCCGCATATCTACCTTGCC
GGAGTCGGTGCTGCCGATAGAATCTGTTCCTCATTTGAGTACAAGCCCCG
AGTATATCTCTACACCTCCTGGCTGCAGCATCTGTTCAGAGCAAACCAGC
GTCTCGGCGGGGTTCAGATTGAAGTGCCTGAACGAACGCTCGAGGCGGAA
TACAGAGCCATGTACATGCTCTCAATTCCCCGCAACCCAACTGAGAACGC
TTGCCTGTACCGCAACCGCACCGTCAGTGGCGACGGTCTAGCACCGATCC
CGAGCCAGGACAAAGAACCAGAGTCCTCCGTCGAAGCAGACGAAAGCGAT
GAGGATGAAGGTGAAGAACCGCCTGGCCCGAGCACCTTCTCCACCGCCAA
GGAAGAGGCCGTTTTTGAAGAGGAGAAAGACGCCGAGCTTGCAAGGGAGA
GCAACAAAAAGTGCTTCCCTGCTTTGGATACTGTACAACTGGACAACGGC
CAACGCATTCCAATGTCTCGGCTCCAAATCGGTCATCGCGAGCTTGTTGC
TCCTGATGTCTTCTCCCCTGTTTTCATGTTTACTCACAAGCTCAACAATA
TCGTCAGCGACTTTGTGCACATTCGCACCCACAGTGGTGATCGACTCTCT
GTTAGTGCCTTGCATTTTATCTACCTCGACTCCAAGCTCATACCTGCCGC
CAATGCCGCCATTGTACAACACGTTCAGCTTGAAGAGGGAACCGTGTCTA
CTGTGTCTCAGGTTTCAGTCGTTCAGCACTCAGGGCTGTACAACCCGTAA
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protein sequence of Ggra3056.t1

>Ggra3056.t1 ID=Ggra3056.t1|Name=Ggra3056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MTRKYGLISIKLPRFATRKSRRSGCGLLGILDALTDVSVDAGDIPHIYLA
GVGAADRICSSFEYKPRVYLYTSWLQHLFRANQRLGGVQIEVPERTLEAE
YRAMYMLSIPRNPTENACLYRNRTVSGDGLAPIPSQDKEPESSVEADESD
EDEGEEPPGPSTFSTAKEEAVFEEEKDAELARESNKKCFPALDTVQLDNG
QRIPMSRLQIGHRELVAPDVFSPVFMFTHKLNNIVSDFVHIRTHSGDRLS
VSALHFIYLDSKLIPAANAAIVQHVQLEEGTVSTVSQVSVVQHSGLYNP*
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mRNA from alignment at tig00000094_pilon:392584..393683-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3056.t1 ID=Ggra3056.t1|Name=Ggra3056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1100bp|location=Sequence derived from alignment at tig00000094_pilon:392584..393683- (Gracilaria gracilis GNS1m male)
ATGACGAGAAAGTATGGTTTAATATCTATCAAACTGCCACGCTTCGCAAC
ACGGAAATCTCGAAGAAGTGGATGTGGGTTGTTGGGGATTCTTGGTAAGA
GAGAGCGCGCGTTTGATGGCGGTGGGGGACAGGTTGGTGGCCATGTGTGC
CGACCAACTGGGCGCGGATAACATCACAGTTGCTGGAGAAATTTGCACAC
GAGATGCTCTGCACAATGTGCTGGCCTTGTACGATCCGTCCGAGATGCTC
TCACTGATGTCAGTGTCGACGCTGGTGACATCCCGCATATCTACCTTGCC
GGAGTCGGTGCTGCCGATAGAATCTGTTCCTCATTTGAGTACAAGCCCCG
AGTATATCTCTACACCTCCTGGCTGCAGCATCTGTTCAGAGCAAACCAGC
GTCTCGGCGGGGTTCAGATTGAAGTGCCTGAACGAACGCTCGAGGCGGAA
TACAGAGCCATGTACATGCTCTCAATTCCCCGCAACCCAACTGAGAACGC
TTGCCTGTACCGCAACCGCACCGTCAGTGGCGACGGTCTAGCACCGATCC
CGAGCCAGGACAAAGAACCAGAGTCCTCCGTCGAAGCAGACGAAAGCGAT
GAGGATGAAGGTGAAGAACCGCGTCGGAAACTAACTACCCTGAGGAGATA
CCGCAGCTTGCTTTTCAACCAGCTGGCCCGAGCACCTTCTCCACCGCCAA
GGAAGAGGCCGTTTTTGAAGAGGAGAAAGACGCCGAGCTTGCAAGGGAGA
GCAACAAAAAGTGCTTCCCTGCTTTGGATACTGTACAACTGGACAACGGC
CAACGCATTCCAATGTCTCGGCTCCAAATCGGTCATCGCGAGCTTGTTGC
TCCTGATGTCTTCTCCCCTGTTTTCATGTTTACTCACAAGCTCAACAATA
TCGTCAGCGACTTTGTGCACATTCGCACCCACAGTGGTGATCGACTCTCT
GTTAGTGCCTTGCATTTTATCTACCTCGACTCCAAGCTCATACCTGCCGC
CAATGCCGCCATTGTACAACACGTTCAGCTTGAAGAGGGAACCGTGTCTA
CTGTGTCTCAGGTTTCAGTCGTTCAGCACTCAGGGCTGTACAACCCGTAA
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Coding sequence (CDS) from alignment at tig00000094_pilon:392584..393683-

>Ggra3056.t1 ID=Ggra3056.t1|Name=Ggra3056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000094_pilon:392584..393683- (Gracilaria gracilis GNS1m male)
ATGACGAGAAAGTATGGTTTAATATCTATCAAACTGCCACGCTTCGCAAC
ACGGAAATCTCGAAGAAGTGGATGTGGGTTGTTGGGGATTCTTGATGCTC
TCACTGATGTCAGTGTCGACGCTGGTGACATCCCGCATATCTACCTTGCC
GGAGTCGGTGCTGCCGATAGAATCTGTTCCTCATTTGAGTACAAGCCCCG
AGTATATCTCTACACCTCCTGGCTGCAGCATCTGTTCAGAGCAAACCAGC
GTCTCGGCGGGGTTCAGATTGAAGTGCCTGAACGAACGCTCGAGGCGGAA
TACAGAGCCATGTACATGCTCTCAATTCCCCGCAACCCAACTGAGAACGC
TTGCCTGTACCGCAACCGCACCGTCAGTGGCGACGGTCTAGCACCGATCC
CGAGCCAGGACAAAGAACCAGAGTCCTCCGTCGAAGCAGACGAAAGCGAT
GAGGATGAAGGTGAAGAACCGCCTGGCCCGAGCACCTTCTCCACCGCCAA
GGAAGAGGCCGTTTTTGAAGAGGAGAAAGACGCCGAGCTTGCAAGGGAGA
GCAACAAAAAGTGCTTCCCTGCTTTGGATACTGTACAACTGGACAACGGC
CAACGCATTCCAATGTCTCGGCTCCAAATCGGTCATCGCGAGCTTGTTGC
TCCTGATGTCTTCTCCCCTGTTTTCATGTTTACTCACAAGCTCAACAATA
TCGTCAGCGACTTTGTGCACATTCGCACCCACAGTGGTGATCGACTCTCT
GTTAGTGCCTTGCATTTTATCTACCTCGACTCCAAGCTCATACCTGCCGC
CAATGCCGCCATTGTACAACACGTTCAGCTTGAAGAGGGAACCGTGTCTA
CTGTGTCTCAGGTTTCAGTCGTTCAGCACTCAGGGCTGTACAACCCGTAA
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