Ggra3033.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3033.t1
Unique NameGgra3033.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:963960..965091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3033Ggra3033Gracilaria gracilis GNS1m malegenetig00000858_pilon 963960..965091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3033.t1Ggra3033.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 963960..965091 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3033.t1.start1Ggra3033.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 963960..963962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3033.t1.CDS1Ggra3033.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 963960..964029 +
Ggra3033.t1.CDS2Ggra3033.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 964235..965091 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3033.t1.exon1Ggra3033.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 963960..964029 +
Ggra3033.t1.exon2Ggra3033.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 964235..965091 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3033.t1.intron1Ggra3033.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 964030..964234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3033.t1.stop1Ggra3033.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 965089..965091 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3033.t1 ID=Ggra3033.t1|Name=Ggra3033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MACGSSATTPAPRHSPPDSVAVSPAHADDTVSKRLLSPASSPASSPASSP
ASQRVSRGDERFVRVVLSPVDQVVRTPARAENDRWLQQFGIDISLLCIYD
SDEEHDAATPQPGDENQHPNLTPPRRANMTQFPAELKPLAESEPFEMRSA
FPSPVATASHLPARLPHSPEQPAANSQPITPRRFHAARSRRQSVSISQRE
LISLTHSAKIEPVVQPPDRKPAETRQQLSAACSSSANAVTGSNVFLTPVR
ASRKQRLQLGADTVVTPVRRSLRLSTKQQNLAPIDQPQARARMLEQFGFT
YTPNRSLQ*
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spliced messenger RNA

>Ggra3033.t1 ID=Ggra3033.t1|Name=Ggra3033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000858_pilon:963960..965091+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGCGGCAGCTCAGCTACCACGCCCGCGCCGCGCCACAGCCCGCC
CGACAGCGTCGCCGTCTCGCccgcgcacgccgATGACACCGTGTCCAAAC
GGCTGCTATCGCCCGCCTCATCGCCCGCTTCATCGCCCGCTTCATCACCC
GCTTCGCAGCGCGTCAGTCGTGGCGATGAGCGCTTCGTGCGCGTGGTGCT
TTCTCCCGTTGACCAAGTCGTGCGCACGCCGGCCCGCGCCGAGAACGACC
GCTGGCTGCAGCAGTTCGGCATTGACATTTCCTTGCTGTGCATTTACGAC
AGTGACGAAGAACACGACGCGGCCACGCCTCAACCCGGCGACGAGAATCA
GCATCCAAACCTCACTCCGCCCCGTCGAGCCAACATGACCCAGTTCCCAG
CTGAGTTGAAGCCGCTCGCCGAATCCGAGCCCTTTGAGATGCGTTCCGCG
TTCCCATCGCCCGTCGCAACAGCCTCTCATCTTCCCGCCCGTCTCCCGCA
CTCGCCGGAACAACCCGCCGCGAACAGCCAGCCGATAACCCCGCGCCGTT
TCCATGCGGCGCGCTCGCGCCGTCAGAGCGTTAGCATTTCTCAGCGAGAA
CTCATTTCGCTCACGCATTCCGCCAAAATTGAGCCCGTTGTGCAACCACC
AGACCGCAAACCAGCTGAGACAAGGCAACAACTTTCAGCCGCCTGTTCGA
GCTCGGCTAATGCTGTCACTGGCTCCAATGTGTTTCTTACTCCGGTGCGA
GCCTCTAGAAAGCAGCGACTTCAACTTGGTGCCGATACCGTTGTCACTCC
TGTACGAAGATCACTCAGACTGAGTACCAAGCAACAGAACCTTGCTCCCA
TTGATCAGCCACAAGCTCGTGCTCGTATGTTGGAGCAATTCGGTTTCACA
TATACCCCAAATCGTTCTCTTCAATGA
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protein sequence of Ggra3033.t1

>Ggra3033.t1 ID=Ggra3033.t1|Name=Ggra3033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MACGSSATTPAPRHSPPDSVAVSPAHADDTVSKRLLSPASSPASSPASSP
ASQRVSRGDERFVRVVLSPVDQVVRTPARAENDRWLQQFGIDISLLCIYD
SDEEHDAATPQPGDENQHPNLTPPRRANMTQFPAELKPLAESEPFEMRSA
FPSPVATASHLPARLPHSPEQPAANSQPITPRRFHAARSRRQSVSISQRE
LISLTHSAKIEPVVQPPDRKPAETRQQLSAACSSSANAVTGSNVFLTPVR
ASRKQRLQLGADTVVTPVRRSLRLSTKQQNLAPIDQPQARARMLEQFGFT
YTPNRSLQ*
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mRNA from alignment at tig00000858_pilon:963960..965091+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3033.t1 ID=Ggra3033.t1|Name=Ggra3033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1132bp|location=Sequence derived from alignment at tig00000858_pilon:963960..965091+ (Gracilaria gracilis GNS1m male)
ATGGCGTGCGGCAGCTCAGCTACCACGCCCGCGCCGCGCCACAGCCCGCC
CGACAGCGTCGCCGTCTCGCGTCTGTTCTCCCCCCCGCGTGATGAGCCCT
TCCGACccgccgcgcgtcctcagcacgcccgcgccgcgccgcgtcgccct
gcgcgcgccgccgtcgccgcccgacgtgacgccgcgccgtctgccgccgc
cgccgccgcgcgccgcgtcggctggcgcggacgtgcgctccgcgccgcgt
cggctgccgtcgtcgcggctcccagccgcgcacgccgATGACACCGTGTC
CAAACGGCTGCTATCGCCCGCCTCATCGCCCGCTTCATCGCCCGCTTCAT
CACCCGCTTCGCAGCGCGTCAGTCGTGGCGATGAGCGCTTCGTGCGCGTG
GTGCTTTCTCCCGTTGACCAAGTCGTGCGCACGCCGGCCCGCGCCGAGAA
CGACCGCTGGCTGCAGCAGTTCGGCATTGACATTTCCTTGCTGTGCATTT
ACGACAGTGACGAAGAACACGACGCGGCCACGCCTCAACCCGGCGACGAG
AATCAGCATCCAAACCTCACTCCGCCCCGTCGAGCCAACATGACCCAGTT
CCCAGCTGAGTTGAAGCCGCTCGCCGAATCCGAGCCCTTTGAGATGCGTT
CCGCGTTCCCATCGCCCGTCGCAACAGCCTCTCATCTTCCCGCCCGTCTC
CCGCACTCGCCGGAACAACCCGCCGCGAACAGCCAGCCGATAACCCCGCG
CCGTTTCCATGCGGCGCGCTCGCGCCGTCAGAGCGTTAGCATTTCTCAGC
GAGAACTCATTTCGCTCACGCATTCCGCCAAAATTGAGCCCGTTGTGCAA
CCACCAGACCGCAAACCAGCTGAGACAAGGCAACAACTTTCAGCCGCCTG
TTCGAGCTCGGCTAATGCTGTCACTGGCTCCAATGTGTTTCTTACTCCGG
TGCGAGCCTCTAGAAAGCAGCGACTTCAACTTGGTGCCGATACCGTTGTC
ACTCCTGTACGAAGATCACTCAGACTGAGTACCAAGCAACAGAACCTTGC
TCCCATTGATCAGCCACAAGCTCGTGCTCGTATGTTGGAGCAATTCGGTT
TCACATATACCCCAAATCGTTCTCTTCAATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:963960..965091+

>Ggra3033.t1 ID=Ggra3033.t1|Name=Ggra3033.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000858_pilon:963960..965091+ (Gracilaria gracilis GNS1m male)
ATGGCGTGCGGCAGCTCAGCTACCACGCCCGCGCCGCGCCACAGCCCGCC
CGACAGCGTCGCCGTCTCGCccgcgcacgccgATGACACCGTGTCCAAAC
GGCTGCTATCGCCCGCCTCATCGCCCGCTTCATCGCCCGCTTCATCACCC
GCTTCGCAGCGCGTCAGTCGTGGCGATGAGCGCTTCGTGCGCGTGGTGCT
TTCTCCCGTTGACCAAGTCGTGCGCACGCCGGCCCGCGCCGAGAACGACC
GCTGGCTGCAGCAGTTCGGCATTGACATTTCCTTGCTGTGCATTTACGAC
AGTGACGAAGAACACGACGCGGCCACGCCTCAACCCGGCGACGAGAATCA
GCATCCAAACCTCACTCCGCCCCGTCGAGCCAACATGACCCAGTTCCCAG
CTGAGTTGAAGCCGCTCGCCGAATCCGAGCCCTTTGAGATGCGTTCCGCG
TTCCCATCGCCCGTCGCAACAGCCTCTCATCTTCCCGCCCGTCTCCCGCA
CTCGCCGGAACAACCCGCCGCGAACAGCCAGCCGATAACCCCGCGCCGTT
TCCATGCGGCGCGCTCGCGCCGTCAGAGCGTTAGCATTTCTCAGCGAGAA
CTCATTTCGCTCACGCATTCCGCCAAAATTGAGCCCGTTGTGCAACCACC
AGACCGCAAACCAGCTGAGACAAGGCAACAACTTTCAGCCGCCTGTTCGA
GCTCGGCTAATGCTGTCACTGGCTCCAATGTGTTTCTTACTCCGGTGCGA
GCCTCTAGAAAGCAGCGACTTCAACTTGGTGCCGATACCGTTGTCACTCC
TGTACGAAGATCACTCAGACTGAGTACCAAGCAACAGAACCTTGCTCCCA
TTGATCAGCCACAAGCTCGTGCTCGTATGTTGGAGCAATTCGGTTTCACA
TATACCCCAAATCGTTCTCTTCAATGA
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