Ggra3014.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3014.t1
Unique NameGgra3014.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:867057..867557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59374.Fisuc_1188
Preferred namehsp18
PFAMsHSP20
Max annot lvl2|Bacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.18e-08
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3014Ggra3014Gracilaria gracilis GNS1m malegenetig00000858_pilon 867057..867557 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3014.t1.stop1Ggra3014.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 867057..867059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3014.t1.CDS1Ggra3014.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 867057..867557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3014.t1.exon1Ggra3014.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 867057..867557 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3014.t1.start1Ggra3014.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 867555..867557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3014.t1Ggra3014.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 867057..867557 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3014.t1 ID=Ggra3014.t1|Name=Ggra3014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MALTFARTFDPFFPFASSRNELRTLCQFADEIDQAFARPEAGRHHTPNYR
YYRGSDGLHLEVELPGVAKEHIEIEIHGSNLSITGRRFKEEKITTEDQND
GDKPKENEDADMSDKKSVAHVYKLRVKAGDNVDEGNIKAEHKNGMLNMFI
PFKGDTGVRRIAISQL*
back to top

spliced messenger RNA

>Ggra3014.t1 ID=Ggra3014.t1|Name=Ggra3014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000858_pilon:867057..867557- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCACATTCGCAAGAACTTTCGATCCTTTCTTTCCCTTTGCATC
ATCACGCAACGAACTTCGTACGCTGTGTCAGTTTGCCGATGAGATTGACC
AAGCATTTGCCCGTCCGGAAGCCGGACGACACCACACCCCGAACTACCGT
TACTACCGAGGCTCTGACGGCCTCCATCTTGAAGTTGAGCTTCCCGGTGT
GGCAAAGGAACACATTGAGATTGAGATCCATGGTTCGAATCTGTCCATAA
CCGGACGACGTTTCAAAGAGGAAAAGATTACCACCGAGGATCAAAACGAC
GGAGACAAACCGAAGGAGAACGAGGATGCGGATATGTCCGATAAGAAATC
AGTGGCCCATGTCTATAAATTGCGAGTCAAGGCTGGAGACAATGTTGACG
AGGGTAATATCAAAGCTGAGCACAAGAATGGCATGTTGAACATGTTCATT
CCGTTCAAGGGGGACACTGGAGTTCGCAGGATTGCAATTTCTCAGCTCTA
A
back to top

protein sequence of Ggra3014.t1

>Ggra3014.t1 ID=Ggra3014.t1|Name=Ggra3014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MALTFARTFDPFFPFASSRNELRTLCQFADEIDQAFARPEAGRHHTPNYR
YYRGSDGLHLEVELPGVAKEHIEIEIHGSNLSITGRRFKEEKITTEDQND
GDKPKENEDADMSDKKSVAHVYKLRVKAGDNVDEGNIKAEHKNGMLNMFI
PFKGDTGVRRIAISQL*
back to top

mRNA from alignment at tig00000858_pilon:867057..867557-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3014.t1 ID=Ggra3014.t1|Name=Ggra3014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000858_pilon:867057..867557- (Gracilaria gracilis GNS1m male)
ATGGCTCTCACATTCGCAAGAACTTTCGATCCTTTCTTTCCCTTTGCATC
ATCACGCAACGAACTTCGTACGCTGTGTCAGTTTGCCGATGAGATTGACC
AAGCATTTGCCCGTCCGGAAGCCGGACGACACCACACCCCGAACTACCGT
TACTACCGAGGCTCTGACGGCCTCCATCTTGAAGTTGAGCTTCCCGGTGT
GGCAAAGGAACACATTGAGATTGAGATCCATGGTTCGAATCTGTCCATAA
CCGGACGACGTTTCAAAGAGGAAAAGATTACCACCGAGGATCAAAACGAC
GGAGACAAACCGAAGGAGAACGAGGATGCGGATATGTCCGATAAGAAATC
AGTGGCCCATGTCTATAAATTGCGAGTCAAGGCTGGAGACAATGTTGACG
AGGGTAATATCAAAGCTGAGCACAAGAATGGCATGTTGAACATGTTCATT
CCGTTCAAGGGGGACACTGGAGTTCGCAGGATTGCAATTTCTCAGCTCTA
A
back to top

Coding sequence (CDS) from alignment at tig00000858_pilon:867057..867557-

>Ggra3014.t1 ID=Ggra3014.t1|Name=Ggra3014.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000858_pilon:867057..867557- (Gracilaria gracilis GNS1m male)
ATGGCTCTCACATTCGCAAGAACTTTCGATCCTTTCTTTCCCTTTGCATC
ATCACGCAACGAACTTCGTACGCTGTGTCAGTTTGCCGATGAGATTGACC
AAGCATTTGCCCGTCCGGAAGCCGGACGACACCACACCCCGAACTACCGT
TACTACCGAGGCTCTGACGGCCTCCATCTTGAAGTTGAGCTTCCCGGTGT
GGCAAAGGAACACATTGAGATTGAGATCCATGGTTCGAATCTGTCCATAA
CCGGACGACGTTTCAAAGAGGAAAAGATTACCACCGAGGATCAAAACGAC
GGAGACAAACCGAAGGAGAACGAGGATGCGGATATGTCCGATAAGAAATC
AGTGGCCCATGTCTATAAATTGCGAGTCAAGGCTGGAGACAATGTTGACG
AGGGTAATATCAAAGCTGAGCACAAGAATGGCATGTTGAACATGTTCATT
CCGTTCAAGGGGGACACTGGAGTTCGCAGGATTGCAATTTCTCAGCTCTA
A
back to top