Ggra3005.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3005.t1
Unique NameGgra3005.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:854199..854834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3005Ggra3005Gracilaria gracilis GNS1m malegenetig00000858_pilon 854199..854834 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3005.t1.stop1Ggra3005.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 854199..854201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3005.t1.CDS1Ggra3005.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 854199..854834 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3005.t1.exon1Ggra3005.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 854199..854834 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3005.t1.start1Ggra3005.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 854832..854834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3005.t1Ggra3005.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 854199..854834 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3005.t1 ID=Ggra3005.t1|Name=Ggra3005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
LEAAVADLEAAVADLDAAVADLDAAVADLDAAVADLDATVADLDAAVADF
EAAVADLEATVADLEATVADLDAAVAVLDAAVAVLDAAVADLEAAVADLD
AAVAVLEAAVAVLEAAVADLDAAEADLEAAVADLETAVADLEAVVAVLEA
AVADLEAAVADLEAAVADLEAAVADLDAAEADLDALRESDADTEADKEDD
CRASSLSDWSQ*
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spliced messenger RNA

>Ggra3005.t1 ID=Ggra3005.t1|Name=Ggra3005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000858_pilon:854199..854834- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGAGGCGGCCGTCGCCGACTTGGAAGCGGCCGTCGCCGATCTGGACGC
GGCCGTCGCTGATCTGGACGCGGCCGTCGCTGATCTGGACGCGGCAGTGG
CCGATTTGGACGCCACTGTGGCTGACTTGGACGCAGCAGTGGCTGATTTC
GAGGCGGCAGTGGCAGATCTGGAAGCGACAGTGGCGGATCTGGAAGCGAC
AGTGGCGGATTTGGACGCGGCGGTTGCGGTTTTAGACGCGGCGGTTGCGG
TTTTAGACGCGGCGGTTGCGGATCTGGAGGCGGCGGTTGCGGATCTCGAT
GCGGCGGTTGCTGTTCTGGAGGCGGCGGTTGCTGTTCTGGAGGCGGCGGT
TGCGGATTTAGACGCGGCAGAGGCGGATCTGGAGGCAGCGGTAGCGGATT
TGGAGACAGCTGTAGCCGACTTGGAGGCGGTGGTGGCGGTTCTGGAGGCA
GCCGTTGCGGATTTGGAGGCGGCCGTTGCGGATTTGGAGGCGGCTGTAGC
CGATTTGGAGGCGGCTGTAGCCGATTTGGACGCAGCCGAGGCGGATTTAG
ACGCACTGAGAGAGAGCGACGCTGACACGGAGGCGGATAAAGAGGACGAC
TGCCGCGCGTCTTCACTTAGCGACTGGTCGCAGTGA
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protein sequence of Ggra3005.t1

>Ggra3005.t1 ID=Ggra3005.t1|Name=Ggra3005.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
LEAAVADLEAAVADLDAAVADLDAAVADLDAAVADLDATVADLDAAVADF
EAAVADLEATVADLEATVADLDAAVAVLDAAVAVLDAAVADLEAAVADLD
AAVAVLEAAVAVLEAAVADLDAAEADLEAAVADLETAVADLEAVVAVLEA
AVADLEAAVADLEAAVADLEAAVADLDAAEADLDALRESDADTEADKEDD
CRASSLSDWSQ*
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mRNA from alignment at tig00000858_pilon:854199..854834-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3005.t1 ID=Ggra3005.t1|Name=Ggra3005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000858_pilon:854199..854834- (Gracilaria gracilis GNS1m male)
TTGGAGGCGGCCGTCGCCGACTTGGAAGCGGCCGTCGCCGATCTGGACGC
GGCCGTCGCTGATCTGGACGCGGCCGTCGCTGATCTGGACGCGGCAGTGG
CCGATTTGGACGCCACTGTGGCTGACTTGGACGCAGCAGTGGCTGATTTC
GAGGCGGCAGTGGCAGATCTGGAAGCGACAGTGGCGGATCTGGAAGCGAC
AGTGGCGGATTTGGACGCGGCGGTTGCGGTTTTAGACGCGGCGGTTGCGG
TTTTAGACGCGGCGGTTGCGGATCTGGAGGCGGCGGTTGCGGATCTCGAT
GCGGCGGTTGCTGTTCTGGAGGCGGCGGTTGCTGTTCTGGAGGCGGCGGT
TGCGGATTTAGACGCGGCAGAGGCGGATCTGGAGGCAGCGGTAGCGGATT
TGGAGACAGCTGTAGCCGACTTGGAGGCGGTGGTGGCGGTTCTGGAGGCA
GCCGTTGCGGATTTGGAGGCGGCCGTTGCGGATTTGGAGGCGGCTGTAGC
CGATTTGGAGGCGGCTGTAGCCGATTTGGACGCAGCCGAGGCGGATTTAG
ACGCACTGAGAGAGAGCGACGCTGACACGGAGGCGGATAAAGAGGACGAC
TGCCGCGCGTCTTCACTTAGCGACTGGTCGCAGTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:854199..854834-

>Ggra3005.t1 ID=Ggra3005.t1|Name=Ggra3005.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000858_pilon:854199..854834- (Gracilaria gracilis GNS1m male)
TTGGAGGCGGCCGTCGCCGACTTGGAAGCGGCCGTCGCCGATCTGGACGC
GGCCGTCGCTGATCTGGACGCGGCCGTCGCTGATCTGGACGCGGCAGTGG
CCGATTTGGACGCCACTGTGGCTGACTTGGACGCAGCAGTGGCTGATTTC
GAGGCGGCAGTGGCAGATCTGGAAGCGACAGTGGCGGATCTGGAAGCGAC
AGTGGCGGATTTGGACGCGGCGGTTGCGGTTTTAGACGCGGCGGTTGCGG
TTTTAGACGCGGCGGTTGCGGATCTGGAGGCGGCGGTTGCGGATCTCGAT
GCGGCGGTTGCTGTTCTGGAGGCGGCGGTTGCTGTTCTGGAGGCGGCGGT
TGCGGATTTAGACGCGGCAGAGGCGGATCTGGAGGCAGCGGTAGCGGATT
TGGAGACAGCTGTAGCCGACTTGGAGGCGGTGGTGGCGGTTCTGGAGGCA
GCCGTTGCGGATTTGGAGGCGGCCGTTGCGGATTTGGAGGCGGCTGTAGC
CGATTTGGAGGCGGCTGTAGCCGATTTGGACGCAGCCGAGGCGGATTTAG
ACGCACTGAGAGAGAGCGACGCTGACACGGAGGCGGATAAAGAGGACGAC
TGCCGCGCGTCTTCACTTAGCGACTGGTCGCAGTGA
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