Ggra2962.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2962.t1
Unique NameGgra2962.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:702244..702920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene1006
PFAMsPyridox_oxase_2
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
Evalue1.32e-37
EggNOG OGsCOG5135@1|root,COG5135@2|Bacteria,1G50T@1117|Cyanobacteria,3VJR2@52604|Pleurocapsales
EC1.4.3.5
DescriptionFMN-dependent enzyme, alr4036 family
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2962Ggra2962Gracilaria gracilis GNS1m malegenetig00000858_pilon 702244..702920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2962.t1Ggra2962.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 702244..702920 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2962.t1.stop1Ggra2962.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 702244..702246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2962.t1.CDS1Ggra2962.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 702244..702582 -
Ggra2962.t1.CDS2Ggra2962.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 702666..702920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2962.t1.exon1Ggra2962.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 702244..702582 -
Ggra2962.t1.exon2Ggra2962.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 702666..702920 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2962.t1.intron1Ggra2962.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 702583..702665 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2962.t1.start1Ggra2962.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 702918..702920 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2962.t1 ID=Ggra2962.t1|Name=Ggra2962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MCARPPWQELINCCIRQERKPTSYFLQLASLTVSGEASCRTVVFRGWHET
ASSETPSLLIATDARSAKVHGLFKYPRAEACWYFLEPRVQFRIVGDVSVI
TSDETNHDLSALRVKQWNDLSPAARALYMCPHPGRPKEKEYSKEQIEEVA
NSQHPLEWFAVLSLRPERVDNVDLRANDRRLFELDSDGNWIENYINP*
back to top

spliced messenger RNA

>Ggra2962.t1 ID=Ggra2962.t1|Name=Ggra2962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000858_pilon:702244..702920- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCGCGACCGCCGTGGCAAGAGCTCATCAATTGCTGCATTCGACA
GGAACGAAAGCCAACATCGTATTTTCTGCAGTTGGCTTCCCTCACTGTTT
CGGGAGAAGCATCGTGCAGAACAGTGGTGTTTCGTGGTTGGCATGAAACA
GCTTCGAGTGAAACACCATCGCTTCTAATAGCTACAGATGCAAGAAGTGC
CAAAGTACACGGTCTCTTCAAGTATCCCAGAGCCGAAGCATGTTGGTACT
TTCTTGAACCTCGTGTTCAATTTCGCATCGTGGGAGATGTTAGCGTGATT
ACTAGTGATGAAACAAATCATGATTTGTCCGCACTCCGCGTGAAACAATG
GAACGATCTTTCGCCCGCAGCACGCGCACTTTATATGTGTCCACATCCCG
GTCGCCCGAAGGAGAAGGAGTATTCAAAAGAGCAAATTGAAGAGGTAGCG
AATAGCCAACACCCACTTGAATGGTTCGCAGTTTTGTCGCTGAGACCGGA
AAGAGTTGATAATGTAGACCTGCGCGCAAATGACAGACGTTTGTTCGAAC
TGGATAGTGACGGCAATTGGATTGAGAACTACATCAACCCTTGA
back to top

protein sequence of Ggra2962.t1

>Ggra2962.t1 ID=Ggra2962.t1|Name=Ggra2962.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MCARPPWQELINCCIRQERKPTSYFLQLASLTVSGEASCRTVVFRGWHET
ASSETPSLLIATDARSAKVHGLFKYPRAEACWYFLEPRVQFRIVGDVSVI
TSDETNHDLSALRVKQWNDLSPAARALYMCPHPGRPKEKEYSKEQIEEVA
NSQHPLEWFAVLSLRPERVDNVDLRANDRRLFELDSDGNWIENYINP*
back to top

mRNA from alignment at tig00000858_pilon:702244..702920-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2962.t1 ID=Ggra2962.t1|Name=Ggra2962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=677bp|location=Sequence derived from alignment at tig00000858_pilon:702244..702920- (Gracilaria gracilis GNS1m male)
ATGTGCGCGCGACCGCCGTGGCAAGAGCTCATCAATTGCTGCATTCGACA
GGAACGAAAGCCAACATCGTATTTTCTGCAGTTGGCTTCCCTCACTGTTT
CGGGAGAAGCATCGTGCAGAACAGTGGTGTTTCGTGGTTGGCATGAAACA
GCTTCGAGTGAAACACCATCGCTTCTAATAGCTACAGATGCAAGAAGTGC
CAAAGTACACGGTCTCTTCAAGTATCCCAGAGCCGAAGCATGTTGGTACT
TTCTTGTACGTCTGCCAGCAGTCACATATACGATAGCTGTCCTGTTTCTC
TTCTGACCCCTTTATATGTTGCCTTTCATGTACTTCAGGAACCTCGTGTT
CAATTTCGCATCGTGGGAGATGTTAGCGTGATTACTAGTGATGAAACAAA
TCATGATTTGTCCGCACTCCGCGTGAAACAATGGAACGATCTTTCGCCCG
CAGCACGCGCACTTTATATGTGTCCACATCCCGGTCGCCCGAAGGAGAAG
GAGTATTCAAAAGAGCAAATTGAAGAGGTAGCGAATAGCCAACACCCACT
TGAATGGTTCGCAGTTTTGTCGCTGAGACCGGAAAGAGTTGATAATGTAG
ACCTGCGCGCAAATGACAGACGTTTGTTCGAACTGGATAGTGACGGCAAT
TGGATTGAGAACTACATCAACCCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000858_pilon:702244..702920-

>Ggra2962.t1 ID=Ggra2962.t1|Name=Ggra2962.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000858_pilon:702244..702920- (Gracilaria gracilis GNS1m male)
ATGTGCGCGCGACCGCCGTGGCAAGAGCTCATCAATTGCTGCATTCGACA
GGAACGAAAGCCAACATCGTATTTTCTGCAGTTGGCTTCCCTCACTGTTT
CGGGAGAAGCATCGTGCAGAACAGTGGTGTTTCGTGGTTGGCATGAAACA
GCTTCGAGTGAAACACCATCGCTTCTAATAGCTACAGATGCAAGAAGTGC
CAAAGTACACGGTCTCTTCAAGTATCCCAGAGCCGAAGCATGTTGGTACT
TTCTTGAACCTCGTGTTCAATTTCGCATCGTGGGAGATGTTAGCGTGATT
ACTAGTGATGAAACAAATCATGATTTGTCCGCACTCCGCGTGAAACAATG
GAACGATCTTTCGCCCGCAGCACGCGCACTTTATATGTGTCCACATCCCG
GTCGCCCGAAGGAGAAGGAGTATTCAAAAGAGCAAATTGAAGAGGTAGCG
AATAGCCAACACCCACTTGAATGGTTCGCAGTTTTGTCGCTGAGACCGGA
AAGAGTTGATAATGTAGACCTGCGCGCAAATGACAGACGTTTGTTCGAAC
TGGATAGTGACGGCAATTGGATTGAGAACTACATCAACCCTTGA
back to top