Ggra2957.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2957.t1
Unique NameGgra2957.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:688841..689875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2957Ggra2957Gracilaria gracilis GNS1m malegenetig00000858_pilon 688841..689875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2957.t1Ggra2957.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 688841..689875 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2957.t1.stop1Ggra2957.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 688841..688843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2957.t1.CDS1Ggra2957.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 688841..689394 -
Ggra2957.t1.CDS2Ggra2957.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 689485..689875 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2957.t1.exon1Ggra2957.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 688841..689394 -
Ggra2957.t1.exon2Ggra2957.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 689485..689875 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2957.t1.intron1Ggra2957.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 689395..689484 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2957.t1.start1Ggra2957.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 689873..689875 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2957.t1 ID=Ggra2957.t1|Name=Ggra2957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MGRNRSSSYAESSDDDFALSDGDKSPARSRLKRPRRSAKPPRRLAVRSPQ
TSSFQLDDDDDDDDVICVPDSLEQDEPKQRQSSNNVESDAGPQDPSAENT
MESAYKSEEPTTNGDGESKRVDVQQKCSPDENDNEHSTRSPRVLKQRKAY
VISDSESEASAHENDDAYNSADDSPEEEEDDVESDFQLSPTRTAKKRKPS
APAKRATPPKKGKTQAKSKTTATKTAAKSTKKTSAVMQRSAPKQKKTTAT
LSSGAGKRRLGARIPGSSSALSSLGSSSQKARRPSSISFRAPLIRSGLSR
RASVPPLHAYLKKN*
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spliced messenger RNA

>Ggra2957.t1 ID=Ggra2957.t1|Name=Ggra2957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000858_pilon:688841..689875- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGAAACCGATCCTCAAGCTATGCAGAATCATCTGACGACGATTT
TGCTCTTTCTGATGGCGACAAGTCTCCAGCCCGTTCCCGTCTGAAGAGGC
CTCGCCGCTCTGCCAAGCCACCGCGTCGACTTGCGGTTCGCTCTCCACAA
ACCAGCAGTTTTCAGCTGGACGACGACGACGACGACGACGATGTGATTTG
CGTCCCAGATTCTTTGGAACAAGACGAACCGAAACAACGGCAATCATCGA
ACAACGTTGAGTCTGACGCTGGTCCACAAGATCCGAGTGCGGAGAACACT
ATGGAAAGCGCATATAAGTCGGAGGAGCCAACGACTAATGGTGACGGCGA
AAGCAAGCGAGTCGATGTTCAACAAAAGTGTTCACCAGACGAGAACGACA
ATGAACACTCAACGAGGTCGCCACGAGTCTTGAAGCAACGGAAGGCATAC
GTCATTTCGGATTCGGAGAGCGAAGCGTCCGCGCATGAAAACGATGACGC
TTACAACAGCGCCGATGATTCGCCTGAAGAGGAGGAGGATGACGTCGAGA
GCGACTTTCAACTATCTCCGACGCGTACTGCGAAAAAGAGAAAACCAAGC
GCCCCAGCAAAGCGCGCGACGCCTCCGAAGAAAGGAAAGACTCAAGCGAA
GTCAAAAACAACTGCGACAAAGACGGCTGCAAAGAGCACTAAGAAGACTA
GTGCAGTCATGCAGAGATCCGCCCCAAAACAAAAGAAGACGACCGCAACA
TTATCTTCCGGTGCGGGGAAGAGGCGGCTGGGAGCTCGAATACCAGGCAG
TTCATCCGCATTATCTTCCCTGGGAAGCTCTTCACAGAAAGCAAGACGGC
CTTCTTCGATTTCCTTTCGGGCTCCGCTCATTCGTTCTGGCCTGTCTAGA
AGGGCATCCGTACCTCCATTGCACGCTTACCTCAAGAAGAATTGA
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protein sequence of Ggra2957.t1

>Ggra2957.t1 ID=Ggra2957.t1|Name=Ggra2957.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MGRNRSSSYAESSDDDFALSDGDKSPARSRLKRPRRSAKPPRRLAVRSPQ
TSSFQLDDDDDDDDVICVPDSLEQDEPKQRQSSNNVESDAGPQDPSAENT
MESAYKSEEPTTNGDGESKRVDVQQKCSPDENDNEHSTRSPRVLKQRKAY
VISDSESEASAHENDDAYNSADDSPEEEEDDVESDFQLSPTRTAKKRKPS
APAKRATPPKKGKTQAKSKTTATKTAAKSTKKTSAVMQRSAPKQKKTTAT
LSSGAGKRRLGARIPGSSSALSSLGSSSQKARRPSSISFRAPLIRSGLSR
RASVPPLHAYLKKN*
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mRNA from alignment at tig00000858_pilon:688841..689875-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2957.t1 ID=Ggra2957.t1|Name=Ggra2957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000858_pilon:688841..689875- (Gracilaria gracilis GNS1m male)
ATGGGTCGAAACCGATCCTCAAGCTATGCAGAATCATCTGACGACGATTT
TGCTCTTTCTGATGGCGACAAGTCTCCAGCCCGTTCCCGTCTGAAGAGGC
CTCGCCGCTCTGCCAAGCCACCGCGTCGACTTGCGGTTCGCTCTCCACAA
ACCAGCAGTTTTCAGCTGGACGACGACGACGACGACGACGATGTGATTTG
CGTCCCAGATTCTTTGGAACAAGACGAACCGAAACAACGGCAATCATCGA
ACAACGTTGAGTCTGACGCTGGTCCACAAGATCCGAGTGCGGAGAACACT
ATGGAAAGCGCATATAAGTCGGAGGAGCCAACGACTAATGGTGACGGCGA
AAGCAAGCGAGTCGATGTTCAACAAAAGTGTTCACCAGACGGTACGTACT
TCTGTGCATGATTCCTTCAACAACTATCTCGTCATCCGTTGTACCAATCG
GCACTGACACAAACCCTTTCCCGACGAATAGAGAACGACAATGAACACTC
AACGAGGTCGCCACGAGTCTTGAAGCAACGGAAGGCATACGTCATTTCGG
ATTCGGAGAGCGAAGCGTCCGCGCATGAAAACGATGACGCTTACAACAGC
GCCGATGATTCGCCTGAAGAGGAGGAGGATGACGTCGAGAGCGACTTTCA
ACTATCTCCGACGCGTACTGCGAAAAAGAGAAAACCAAGCGCCCCAGCAA
AGCGCGCGACGCCTCCGAAGAAAGGAAAGACTCAAGCGAAGTCAAAAACA
ACTGCGACAAAGACGGCTGCAAAGAGCACTAAGAAGACTAGTGCAGTCAT
GCAGAGATCCGCCCCAAAACAAAAGAAGACGACCGCAACATTATCTTCCG
GTGCGGGGAAGAGGCGGCTGGGAGCTCGAATACCAGGCAGTTCATCCGCA
TTATCTTCCCTGGGAAGCTCTTCACAGAAAGCAAGACGGCCTTCTTCGAT
TTCCTTTCGGGCTCCGCTCATTCGTTCTGGCCTGTCTAGAAGGGCATCCG
TACCTCCATTGCACGCTTACCTCAAGAAGAATTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:688841..689875-

>Ggra2957.t1 ID=Ggra2957.t1|Name=Ggra2957.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000858_pilon:688841..689875- (Gracilaria gracilis GNS1m male)
ATGGGTCGAAACCGATCCTCAAGCTATGCAGAATCATCTGACGACGATTT
TGCTCTTTCTGATGGCGACAAGTCTCCAGCCCGTTCCCGTCTGAAGAGGC
CTCGCCGCTCTGCCAAGCCACCGCGTCGACTTGCGGTTCGCTCTCCACAA
ACCAGCAGTTTTCAGCTGGACGACGACGACGACGACGACGATGTGATTTG
CGTCCCAGATTCTTTGGAACAAGACGAACCGAAACAACGGCAATCATCGA
ACAACGTTGAGTCTGACGCTGGTCCACAAGATCCGAGTGCGGAGAACACT
ATGGAAAGCGCATATAAGTCGGAGGAGCCAACGACTAATGGTGACGGCGA
AAGCAAGCGAGTCGATGTTCAACAAAAGTGTTCACCAGACGAGAACGACA
ATGAACACTCAACGAGGTCGCCACGAGTCTTGAAGCAACGGAAGGCATAC
GTCATTTCGGATTCGGAGAGCGAAGCGTCCGCGCATGAAAACGATGACGC
TTACAACAGCGCCGATGATTCGCCTGAAGAGGAGGAGGATGACGTCGAGA
GCGACTTTCAACTATCTCCGACGCGTACTGCGAAAAAGAGAAAACCAAGC
GCCCCAGCAAAGCGCGCGACGCCTCCGAAGAAAGGAAAGACTCAAGCGAA
GTCAAAAACAACTGCGACAAAGACGGCTGCAAAGAGCACTAAGAAGACTA
GTGCAGTCATGCAGAGATCCGCCCCAAAACAAAAGAAGACGACCGCAACA
TTATCTTCCGGTGCGGGGAAGAGGCGGCTGGGAGCTCGAATACCAGGCAG
TTCATCCGCATTATCTTCCCTGGGAAGCTCTTCACAGAAAGCAAGACGGC
CTTCTTCGATTTCCTTTCGGGCTCCGCTCATTCGTTCTGGCCTGTCTAGA
AGGGCATCCGTACCTCCATTGCACGCTTACCTCAAGAAGAATTGA
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