Ggra2889.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2889.t1
Unique NameGgra2889.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:194841..197000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2889Ggra2889Gracilaria gracilis GNS1m malegenetig00000858_pilon 194841..197000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2889.t1Ggra2889.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 194841..197000 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2889.t1.stop1Ggra2889.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 194841..194843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2889.t1.CDS1Ggra2889.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 194841..195828 -
Ggra2889.t1.CDS2Ggra2889.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 196489..197000 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2889.t1.exon1Ggra2889.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 194841..195828 -
Ggra2889.t1.exon2Ggra2889.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 196489..197000 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2889.t1.intron1Ggra2889.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 195829..196488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2889.t1.start1Ggra2889.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 196998..197000 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2889.t1 ID=Ggra2889.t1|Name=Ggra2889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MAQLHLPSTTAKVLAHIQDTDDCTTFAELFCTDAHPCISQIRKSFLRLSL
LVHPDRGRSRDLDRSKECMQIIARGFEQAKNEALITAWERGKALPSAPVL
EEDVYFCLRTSDREKEYERQMHAREVHEFRKAEQRQKQSAARPSQPPSSQ
SKPPRRKKTPPRPNSSTSGFPEAACDPEISGIDNELQEEELENWFGTENE
ANSADDLEGTGDEVDFNPCNYIADDAVTSFDKEFCQPSRPVRQNSSGVSG
TPQEEKRKEQKRVSNQKARQRAKDALRAERSAALRWKPRRVCPINPQVGM
MMDARWKCEQIVRAYTAYMGIQPIINIHQTATKFTMTCREKDCASTLVFD
WQPKSGMWKLNKFIGHSNKCFGQDVPSASSSEASARNARNCAEAYTAHQV
ARTLLDEAAKDPTISIKTIEGLVKAKGIYMRQPPYSHYRAIRRELRRHLS
VGRATNMAALDGYAELLRKQGHYVSIFISNGGGDESHADKSCKTYIFSR*
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spliced messenger RNA

>Ggra2889.t1 ID=Ggra2889.t1|Name=Ggra2889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000858_pilon:194841..197000- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGCTTCATTTGCCTTCTACAACGGCCAAAGTCTTGGCACACAT
TCAGGACACAGACGACTGCACTACTTTTGCAGAGCTTTTTTGTACTGACG
CCCACCCTTGTATCAGTCAAATTAGGAAGTCGTTCTTGCGCTTGTCGTTG
CTTGTGCATCCTGATCGTGGCAGAAGTAGGGATCTCGATCGATCTAAAGA
GTGCATGCAGATCATTGCCCGCGGCTTTGAGCAAGCAAAAAATGAAGCGC
TTATAACTGCTTGGGAAAGAGGTAAAGCTCTCCCTTCCGCTCCTGTCCTG
GAGGAAGACGTTTACTTCTGTCTACGCACCAGTGATCGCGAAAAAGAATA
CGAGCGCCAAATGCACGCTCGAGAAGTGCACGAATTCCGCAAAGCTGAAC
AACGACAAAAGCAATCTGCTGCTCGTCCATCACAGCCGCCATCTTCTCAG
TCCAAACCGCCTCGCCGTAAGAAGACACCACCGCGTCCCAATTCGTCAAC
CTCGGGATTTCCAGAGGCTGCCTGTGATCCGGAAATATCAGGAATTGACA
ATGAACTACAAGAAGAAGAGCTTGAAAATTGGTTTGGGACAGAGAACGAA
GCCAACAGTGCTGACGATCTCGAAGGAACAGGCGACGAGGTCGACTTCAA
CCCCTGCAACTACATTGCTGACGACGCTGTAACTAGCTTTGACAAAGAAT
TTTGTCAACCCAGCCGCCCTGTTCGCCAAAATTCGTCAGGGGTATCTGGT
ACGCCACAAGAGGAGAAGAGAAAAGAGCAGAAGCGCGTTTCCAACCAGAA
AGCTAGGCAGCGTGCAAAGGATGCGCTGCGGGCTGAACGCTCCGCTGCTC
TGCGTTGGAAGCCGCGTAGAGTTTGCCCGATAAACCCACAGGTTGGAATG
ATGATGGATGCTCGCTGGAAGTGCGAGCAGATTGTTCGGGCGTACACGGC
TTATATGGGCATCCAGCCCATCATCAACATCCATCAAACCGCTACCAAGT
TCACAATGACGTGCCGAGAGAAGGATTGTGCGTCAACTTTGGTTTTCGAT
TGGCAGCCGAAAAGCGGAATGTGGAAACTCAATAAGTTCATAGGGCATAG
TAACAAGTGCTTTGGACAAGATGTGCCATCCGCTTCTTCGTCAGAAGCGT
CGGCTAGAAATGCTAGGAACTGCGCTGAAGCATACACAGCGCACCAGGTG
GCAAGGACACTTCTTGATGAAGCAGCAAAGGACCCAACGATCTCCATAAA
AACCATTGAAGGTTTGGTAAAAGCGAAAGGAATATATATGAGGCAACCAC
CTTACAGCCACTACCGCGCAATACGACGAGAGTTACGTCGCCATCTCAGC
GTTGGTCGTGCTACTAATATGGCAGCACTAGATGGTTATGCCGAACTGCT
TCGGAAACAAGGACACTACGTCTCGATTTTTATATCCAATGGAGGTGGAG
ATGAAAGCCATGCGGATAAAAGCTGCAAAACATATATTTTCAGCAGATGA
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protein sequence of Ggra2889.t1

>Ggra2889.t1 ID=Ggra2889.t1|Name=Ggra2889.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MAQLHLPSTTAKVLAHIQDTDDCTTFAELFCTDAHPCISQIRKSFLRLSL
LVHPDRGRSRDLDRSKECMQIIARGFEQAKNEALITAWERGKALPSAPVL
EEDVYFCLRTSDREKEYERQMHAREVHEFRKAEQRQKQSAARPSQPPSSQ
SKPPRRKKTPPRPNSSTSGFPEAACDPEISGIDNELQEEELENWFGTENE
ANSADDLEGTGDEVDFNPCNYIADDAVTSFDKEFCQPSRPVRQNSSGVSG
TPQEEKRKEQKRVSNQKARQRAKDALRAERSAALRWKPRRVCPINPQVGM
MMDARWKCEQIVRAYTAYMGIQPIINIHQTATKFTMTCREKDCASTLVFD
WQPKSGMWKLNKFIGHSNKCFGQDVPSASSSEASARNARNCAEAYTAHQV
ARTLLDEAAKDPTISIKTIEGLVKAKGIYMRQPPYSHYRAIRRELRRHLS
VGRATNMAALDGYAELLRKQGHYVSIFISNGGGDESHADKSCKTYIFSR*
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mRNA from alignment at tig00000858_pilon:194841..197000-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2889.t1 ID=Ggra2889.t1|Name=Ggra2889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2160bp|location=Sequence derived from alignment at tig00000858_pilon:194841..197000- (Gracilaria gracilis GNS1m male)
ATGGCGCAGCTTCATTTGCCTTCTACAACGGCCAAAGTCTTGGCACACAT
TCAGGACACAGACGACTGCACTACTTTTGCAGAGCTTTTTTGTACTGACG
CCCACCCTTGTATCAGTCAAATTAGGAAGTCGTTCTTGCGCTTGTCGTTG
CTTGTGCATCCTGATCGTGGCAGAAGTAGGGATCTCGATCGATCTAAAGA
GTGCATGCAGATCATTGCCCGCGGCTTTGAGCAAGCAAAAAATGAAGCGC
TTATAACTGCTTGGGAAAGAGGTAAAGCTCTCCCTTCCGCTCCTGTCCTG
GAGGAAGACGTTTACTTCTGTCTACGCACCAGTGATCGCGAAAAAGAATA
CGAGCGCCAAATGCACGCTCGAGAAGTGCACGAATTCCGCAAAGCTGAAC
AACGACAAAAGCAATCTGCTGCTCGTCCATCACAGCCGCCATCTTCTCAG
TCCAAACCGCCTCGCCGTAAGAAGACACCACCGCGTCCCAATTCGTCAAC
CTCGGGATTTCCGTTTGCACAGAGCCAGGGCCCTTCTTCAAACCATACAG
ATAAGTCACCACCGCCTCAGTGTTCAGGCCAACCTCGCCGCTCTCTATCC
CCTCCGTCTCGTTCAACTACAAAACGATGTGGAGGTTCTCCACGCCCCCG
TCAATCGTCTCCGCTCGCTCGTGAACCTTCATCACCGCATGAATCTGCTT
CTAGATCGCCAAATAGGCAGAGTTCATCCCCTTTCAGATGCCACCCATCT
CCTACCGACCAGTCCCCGCCGCCACCCCGTCAAGAGTCGCCGCCACCGCG
GCATGCGCCGCAGCCCTCCCACCATGCGTCGCAGAACCCCCGCCATGAGC
CACTCCCCCAACCGCGTCATGGCTCACCACCGCCGTCTGGTCATGGGTCG
CCACCACCATCTCGTCAAGGGCCGCCACCGCCATCTCGCCATGCATCAAA
GCCGTCCAACCGCCAAACATCTCCGCTTCAGCGTCCATCGCCGCCACAGG
CTCCATATTCATCGCCTCCGCCTGATCTTCCATCGCCACCGCCTCCGTCG
TCCTCGCTACATCGCCACTGCTCGCCGTCCGCTCCCAAACAGTCTAATCG
GCCGCAACCCCGTTGTGCGTCCCCTCCGCCTTGTCCTCCCACGTCTACCA
CCTGCCCCCCGTCGCATGGAAGAGAGGCTGCCTGTGATCCGGAAATATCA
GGAATTGACAATGAACTACAAGAAGAAGAGCTTGAAAATTGGTTTGGGAC
AGAGAACGAAGCCAACAGTGCTGACGATCTCGAAGGAACAGGCGACGAGG
TCGACTTCAACCCCTGCAACTACATTGCTGACGACGCTGTAACTAGCTTT
GACAAAGAATTTTGTCAACCCAGCCGCCCTGTTCGCCAAAATTCGTCAGG
GGTATCTGGTACGCCACAAGAGGAGAAGAGAAAAGAGCAGAAGCGCGTTT
CCAACCAGAAAGCTAGGCAGCGTGCAAAGGATGCGCTGCGGGCTGAACGC
TCCGCTGCTCTGCGTTGGAAGCCGCGTAGAGTTTGCCCGATAAACCCACA
GGTTGGAATGATGATGGATGCTCGCTGGAAGTGCGAGCAGATTGTTCGGG
CGTACACGGCTTATATGGGCATCCAGCCCATCATCAACATCCATCAAACC
GCTACCAAGTTCACAATGACGTGCCGAGAGAAGGATTGTGCGTCAACTTT
GGTTTTCGATTGGCAGCCGAAAAGCGGAATGTGGAAACTCAATAAGTTCA
TAGGGCATAGTAACAAGTGCTTTGGACAAGATGTGCCATCCGCTTCTTCG
TCAGAAGCGTCGGCTAGAAATGCTAGGAACTGCGCTGAAGCATACACAGC
GCACCAGGTGGCAAGGACACTTCTTGATGAAGCAGCAAAGGACCCAACGA
TCTCCATAAAAACCATTGAAGGTTTGGTAAAAGCGAAAGGAATATATATG
AGGCAACCACCTTACAGCCACTACCGCGCAATACGACGAGAGTTACGTCG
CCATCTCAGCGTTGGTCGTGCTACTAATATGGCAGCACTAGATGGTTATG
CCGAACTGCTTCGGAAACAAGGACACTACGTCTCGATTTTTATATCCAAT
GGAGGTGGAGATGAAAGCCATGCGGATAAAAGCTGCAAAACATATATTTT
CAGCAGATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:194841..197000-

>Ggra2889.t1 ID=Ggra2889.t1|Name=Ggra2889.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000858_pilon:194841..197000- (Gracilaria gracilis GNS1m male)
ATGGCGCAGCTTCATTTGCCTTCTACAACGGCCAAAGTCTTGGCACACAT
TCAGGACACAGACGACTGCACTACTTTTGCAGAGCTTTTTTGTACTGACG
CCCACCCTTGTATCAGTCAAATTAGGAAGTCGTTCTTGCGCTTGTCGTTG
CTTGTGCATCCTGATCGTGGCAGAAGTAGGGATCTCGATCGATCTAAAGA
GTGCATGCAGATCATTGCCCGCGGCTTTGAGCAAGCAAAAAATGAAGCGC
TTATAACTGCTTGGGAAAGAGGTAAAGCTCTCCCTTCCGCTCCTGTCCTG
GAGGAAGACGTTTACTTCTGTCTACGCACCAGTGATCGCGAAAAAGAATA
CGAGCGCCAAATGCACGCTCGAGAAGTGCACGAATTCCGCAAAGCTGAAC
AACGACAAAAGCAATCTGCTGCTCGTCCATCACAGCCGCCATCTTCTCAG
TCCAAACCGCCTCGCCGTAAGAAGACACCACCGCGTCCCAATTCGTCAAC
CTCGGGATTTCCAGAGGCTGCCTGTGATCCGGAAATATCAGGAATTGACA
ATGAACTACAAGAAGAAGAGCTTGAAAATTGGTTTGGGACAGAGAACGAA
GCCAACAGTGCTGACGATCTCGAAGGAACAGGCGACGAGGTCGACTTCAA
CCCCTGCAACTACATTGCTGACGACGCTGTAACTAGCTTTGACAAAGAAT
TTTGTCAACCCAGCCGCCCTGTTCGCCAAAATTCGTCAGGGGTATCTGGT
ACGCCACAAGAGGAGAAGAGAAAAGAGCAGAAGCGCGTTTCCAACCAGAA
AGCTAGGCAGCGTGCAAAGGATGCGCTGCGGGCTGAACGCTCCGCTGCTC
TGCGTTGGAAGCCGCGTAGAGTTTGCCCGATAAACCCACAGGTTGGAATG
ATGATGGATGCTCGCTGGAAGTGCGAGCAGATTGTTCGGGCGTACACGGC
TTATATGGGCATCCAGCCCATCATCAACATCCATCAAACCGCTACCAAGT
TCACAATGACGTGCCGAGAGAAGGATTGTGCGTCAACTTTGGTTTTCGAT
TGGCAGCCGAAAAGCGGAATGTGGAAACTCAATAAGTTCATAGGGCATAG
TAACAAGTGCTTTGGACAAGATGTGCCATCCGCTTCTTCGTCAGAAGCGT
CGGCTAGAAATGCTAGGAACTGCGCTGAAGCATACACAGCGCACCAGGTG
GCAAGGACACTTCTTGATGAAGCAGCAAAGGACCCAACGATCTCCATAAA
AACCATTGAAGGTTTGGTAAAAGCGAAAGGAATATATATGAGGCAACCAC
CTTACAGCCACTACCGCGCAATACGACGAGAGTTACGTCGCCATCTCAGC
GTTGGTCGTGCTACTAATATGGCAGCACTAGATGGTTATGCCGAACTGCT
TCGGAAACAAGGACACTACGTCTCGATTTTTATATCCAATGGAGGTGGAG
ATGAAAGCCATGCGGATAAAAGCTGCAAAACATATATTTTCAGCAGATGA
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