Ggra2870.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2870.t1
Unique NameGgra2870.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000077_piloncontigtig00000077_pilon:293432..293956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2870Ggra2870Gracilaria gracilis GNS1m malegenetig00000077_pilon 293432..293956 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2870.t1.start1Ggra2870.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000077_pilon 293432..293434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2870.t1.CDS1Ggra2870.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000077_pilon 293432..293956 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2870.t1.exon1Ggra2870.t1.exon1Gracilaria gracilis GNS1m maleexontig00000077_pilon 293432..293956 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2870.t1.stop1Ggra2870.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000077_pilon 293954..293956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2870.t1Ggra2870.t1Gracilaria gracilis GNS1m malepolypeptidetig00000077_pilon 293432..293956 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2870.t1 ID=Ggra2870.t1|Name=Ggra2870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=175bp
MVTERHDAACSTSFAGSASSSASPLGLHHVEMHQTNQADPLPEVSEAETL
RLLQDSCRYVNETPPSPLLEGLKLARTWVQNLARVELVVHGDTLGAIDFL
FFMSDLANNVVQPHVDAFGDATVEDVGVSTGSVLDTMSVANRNLIIARNE
NTAWFWNAPFGVTFSHKAFKCCRH*
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spliced messenger RNA

>Ggra2870.t1 ID=Ggra2870.t1|Name=Ggra2870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000077_pilon:293432..293956+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACGGAGCGTCATGACGCAGCCTGCTCCACGTCTTTCGCTGGCTC
TGCAAGCAGTTCCGCATCTCCTCTTGGACTCCATCATGTGGAAATGCACC
AAACGAACCAGGCCGACCCCTTACCGGAAGTTTCTGAAGCGGAAACCCTG
CGCTTGCTACAAGACTCTTGCCGTTACGTGAATGAAACTCCCCCATCTCC
ATTGCTAGAAGGTCTGAAGCTAGCCCGTACATGGGTGCAGAATCTGGCCC
GGGTGGAACTTGTGGTTCACGGCGACACCCTCGGTGCCATAGATTTTCTT
TTTTTCATGAGCGACCTTGCTAACAATGTTGTGCAGCCACACGTTGACGC
TTTCGGTGACGCGACGGTTGAGGACGTCGGCGTCAGCACAGGGTCTGTAC
TTGACACTATGAGTGTGGCCAACCGCAATTTAATAATCGCGAGGAACGAG
AATACTGCTTGGTTTTGGAACGCTCCGTTTGGCGTTACGTTCTCGCACAA
GGCCTTCAAGTGCTGTAGACATTAG
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protein sequence of Ggra2870.t1

>Ggra2870.t1 ID=Ggra2870.t1|Name=Ggra2870.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MVTERHDAACSTSFAGSASSSASPLGLHHVEMHQTNQADPLPEVSEAETL
RLLQDSCRYVNETPPSPLLEGLKLARTWVQNLARVELVVHGDTLGAIDFL
FFMSDLANNVVQPHVDAFGDATVEDVGVSTGSVLDTMSVANRNLIIARNE
NTAWFWNAPFGVTFSHKAFKCCRH*
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mRNA from alignment at tig00000077_pilon:293432..293956+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2870.t1 ID=Ggra2870.t1|Name=Ggra2870.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000077_pilon:293432..293956+ (Gracilaria gracilis GNS1m male)
ATGGTAACGGAGCGTCATGACGCAGCCTGCTCCACGTCTTTCGCTGGCTC
TGCAAGCAGTTCCGCATCTCCTCTTGGACTCCATCATGTGGAAATGCACC
AAACGAACCAGGCCGACCCCTTACCGGAAGTTTCTGAAGCGGAAACCCTG
CGCTTGCTACAAGACTCTTGCCGTTACGTGAATGAAACTCCCCCATCTCC
ATTGCTAGAAGGTCTGAAGCTAGCCCGTACATGGGTGCAGAATCTGGCCC
GGGTGGAACTTGTGGTTCACGGCGACACCCTCGGTGCCATAGATTTTCTT
TTTTTCATGAGCGACCTTGCTAACAATGTTGTGCAGCCACACGTTGACGC
TTTCGGTGACGCGACGGTTGAGGACGTCGGCGTCAGCACAGGGTCTGTAC
TTGACACTATGAGTGTGGCCAACCGCAATTTAATAATCGCGAGGAACGAG
AATACTGCTTGGTTTTGGAACGCTCCGTTTGGCGTTACGTTCTCGCACAA
GGCCTTCAAGTGCTGTAGACATTAG
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Coding sequence (CDS) from alignment at tig00000077_pilon:293432..293956+

>Ggra2870.t1 ID=Ggra2870.t1|Name=Ggra2870.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000077_pilon:293432..293956+ (Gracilaria gracilis GNS1m male)
ATGGTAACGGAGCGTCATGACGCAGCCTGCTCCACGTCTTTCGCTGGCTC
TGCAAGCAGTTCCGCATCTCCTCTTGGACTCCATCATGTGGAAATGCACC
AAACGAACCAGGCCGACCCCTTACCGGAAGTTTCTGAAGCGGAAACCCTG
CGCTTGCTACAAGACTCTTGCCGTTACGTGAATGAAACTCCCCCATCTCC
ATTGCTAGAAGGTCTGAAGCTAGCCCGTACATGGGTGCAGAATCTGGCCC
GGGTGGAACTTGTGGTTCACGGCGACACCCTCGGTGCCATAGATTTTCTT
TTTTTCATGAGCGACCTTGCTAACAATGTTGTGCAGCCACACGTTGACGC
TTTCGGTGACGCGACGGTTGAGGACGTCGGCGTCAGCACAGGGTCTGTAC
TTGACACTATGAGTGTGGCCAACCGCAATTTAATAATCGCGAGGAACGAG
AATACTGCTTGGTTTTGGAACGCTCCGTTTGGCGTTACGTTCTCGCACAA
GGCCTTCAAGTGCTGTAGACATTAG
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