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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1046627.BZARG_2944 |
| PFAMs | AhpC-TSA |
| Max annot lvl | 976|Bacteroidetes |
| Evalue | 0.000483 |
| EggNOG OGs | COG1225@1|root,COG1225@2|Bacteria,4NKV2@976|Bacteroidetes,1I1MF@117743|Flavobacteriia |
| Description | AhpC/TSA family |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2858.t1.start1 | Ggra2858.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000077_pilon 82520..82522 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2858.t1 ID=Ggra2858.t1|Name=Ggra2858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp MALVSPPPLPVLPPLAPVLEAKKKELYSILPPEFLAELERTSAELEKLFT PTPLQLGDIAPSFTLNDALDKPVSLQDLLDSHTAVVVTWYRGDTAPYKIE PPGNPHALLVYEPVLETCLDRLSQMVVSRPGPILSSSSTLTTDASATQEY PSLFKAAVLIVQHQGENQLGCCLLIRLLDKILVHEDEHTRDPGMRHILQS HRQEFADIAARLFDRISEGLFSFIKPVLKFLSTTDGIRVLESGIQTLEYS ITLRAQMAQADKFWGLYVLQGLDAIGPTFQSDLGENGFTRTFIGGKRYTI RSLRKKLLHRNAARNPTPVANDVFTVAISYKHFWENESDRISGPDLHAIA SFIKASSGSRIRFWVDTKLPPSNDGSFERWLRRGVTPYSRYLTLICPSAE ASQDRFWIANEKYIGIAGKGIFYFRGDDIFFDKGHEDFKKLAKLALKLAV GDEECPPGVRPEDQGKAEQWALGILGSQHNSRSVSFQGPRADELFRADFD ENRAICHIQVVIGENGPQNLPLVTGKEWNKYNPLMKGNEGHQEHQMVSWI GLVHPEEKNNVYFLHMYLLTKIKKPRLVVLRVRLRQPYDEQEGNSIEEEV LMMMDTSELREMLPVAVPLTCDWKVFNGN* back to topspliced messenger RNA >Ggra2858.t1 ID=Ggra2858.t1|Name=Ggra2858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000077_pilon:82520..87347+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCCTCGTCAGCCCTCCTCCGCTCCCAGTGCTGCCCCCCCTCGCGCC CGTGCTCGAGGCCAAGAAGAAGGAGCTGTACTCCATCCTCCCGCCCGAGT TCCTGGCCGAGCTGGAGAGGACCTCCGCCGAGCTCGAGAAACTGTTCACC CCGACGCCGCTCCAATTGGGAGACATTGCCCCCTCGTTCACGCTCAATGA CGCGCTGGACAAGCCCGTCAGTCTGCAAGACCTGCTTGATTCGCACACCG CCGTGGTGGTCACCTGGTATCGTGgcGATACCGCTCCTTACAAGATAGAG CCCCCAGGCAATCCTCACGCTCTTCTAGTATATGAACCCGTTCTGGAAAC TTGTTTGGACAGGCTGTCGCAGATGGTGGTCAGCCGCCCAGGCCCAATCT TGTCGTCGTCATCGACTCTAACGACTGATGCTTCTGCTACACAGGAATAT CCGTCATTATTTAAGGCGGCTGTCTTAATTGTTCAACATCAAGGCGAGAA CCAGCTTGGCTGCTGTCTGCTCATTCGATTACTTGACAAGATTCTTGTTC ATGAAGACGAACATACTAGGGATCCTGGAATGAGGCATATTCTTCAGTCC CATAGACAGGAATTCGCAGACATCGCAGCGAGACTTTTTGACAGAATATC TGAAGGTCTTTTTTCCTTTATCAAGCCTGTCTTGAAATTTCTAAGCACGA CAGATGGTATTAGGGTGTTAGAAAGTGGAATACAAACACTGGAGTACTCC ATAACTTTACGGGCTCAAATGGCACAAGCTGATAAGTTTTGGGGACTTTA CGTTCTTCAAGGGCTCGATGCTATTGGTCCCACCTTCCAAAGCGATCTGG GGGAAAATGGTTTTACAAGAACATTCATTGGGGGGAAACGATATACAATT CGGTCACTTAGAAAAAAACTCTTGCACAGAAACGCTGCAAGAAATCCAAC GCCAGTTGCAAATGATGTCTTCACTGTCGCAATTTCGTACAAGCACTTTT GGGAGAATGAGAGCGATAGGATCAGTGGACCAGATCTTCACGCAATTGCA TCCTTCATCAAGGCAAGTAGTGGTTCGCGGATAAGATTCTGGGTTGACAC TAAGCTCCCTCCAAGCAATGATGGTTCATTTGAAAGATGGTTGAGAAGAG GTGTAACGCCTTATTCCCGCTACTTGACACTTATTTGCCCATCTGCCGAA GCATCACAAGATCGGTTTTGGATAGCAAACGAGAAATACATCGGTATTGC CGGAAAAGGTATTTTCTATTTCCGTGGAGATGACATATTTTTCGACAAAG GCCATGAAGATTTTAAGAAACTGGCAAAGCTTGCCCTCAAGCTAGCCGTC GGAGACGAGGAATGCCCACCCGGAGTTCGCCCTGAGGATCAAGGTAAAGC AGAGCAGTGGGCCTTAGGCATTCTCGGAAGTCAACACAACAGTAGGAGCG TTAGCTTTCAAGGGCCAAGAGCTGATGAACTATTCCGCGCTGACTTTGAC GAAAATAGAGCTATTTGTCATATTCAAGTTGTCATAGGAGAAAATGGACC ACAGAATCTGCCGCTGGTTACAGGAAAAGAGTGGAACAAGTATAACCCTT TGATGAAAGGTAATGAAGGTCATCAAGAGCATCAGATGGTCAGCTGGATT GGGCTTGTACATCCCGAAGAGAAGAACAATGTGTACTTTTTGCATATGTA TTTATTAACGAAAATCAAAAAGCCCAGGCTCGTTGTTTTGCGTGTTCGAC TTCGGCAACCATATGATGAACAAGAAGGGAACTCCATTGAAGAAGAAGTT CTCATGATGATGGATACTAGTGAATTACGAGAAATGCTTCCGGTGGCCGT GCCTCTCACTTGCGATTGGAAAGTGTTCAATGGGAACTAA back to topprotein sequence of Ggra2858.t1 >Ggra2858.t1 ID=Ggra2858.t1|Name=Ggra2858.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=630bp
MALVSPPPLPVLPPLAPVLEAKKKELYSILPPEFLAELERTSAELEKLFT PTPLQLGDIAPSFTLNDALDKPVSLQDLLDSHTAVVVTWYRGDTAPYKIE PPGNPHALLVYEPVLETCLDRLSQMVVSRPGPILSSSSTLTTDASATQEY PSLFKAAVLIVQHQGENQLGCCLLIRLLDKILVHEDEHTRDPGMRHILQS HRQEFADIAARLFDRISEGLFSFIKPVLKFLSTTDGIRVLESGIQTLEYS ITLRAQMAQADKFWGLYVLQGLDAIGPTFQSDLGENGFTRTFIGGKRYTI RSLRKKLLHRNAARNPTPVANDVFTVAISYKHFWENESDRISGPDLHAIA SFIKASSGSRIRFWVDTKLPPSNDGSFERWLRRGVTPYSRYLTLICPSAE ASQDRFWIANEKYIGIAGKGIFYFRGDDIFFDKGHEDFKKLAKLALKLAV GDEECPPGVRPEDQGKAEQWALGILGSQHNSRSVSFQGPRADELFRADFD ENRAICHIQVVIGENGPQNLPLVTGKEWNKYNPLMKGNEGHQEHQMVSWI GLVHPEEKNNVYFLHMYLLTKIKKPRLVVLRVRLRQPYDEQEGNSIEEEV LMMMDTSELREMLPVAVPLTCDWKVFNGN* back to topmRNA from alignment at tig00000077_pilon:82520..87347+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2858.t1 ID=Ggra2858.t1|Name=Ggra2858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4828bp|location=Sequence derived from alignment at tig00000077_pilon:82520..87347+ (Gracilaria gracilis GNS1m male) ATGGCCCTCGTCAGCCCTCCTCCGCTCCCAGTGCTGCCCCCCCTCGCGCC
CGTGCTCGAGGCCAAGAAGAAGGAGCTGTACTCCATCCTCCCGCCCGAGT
TCCTGGCCGAGCTGGAGAGGACCTCCGCCGAGCTCGAGAAACTGTTCACC
CCGACGCCGCTCCAATTGGGAGACATTGCCCCCTCGTTCACGCTCAATGA
CGCGCTGGACAAGCCCGTCAGTCTGCAAGACCTGCTTGATTCGCACACCG
CCGTGGTGGTCACCTGGTATCGTGgcgtgtggtgcccgtactgcaacgcc
acgctcgactcgctcatcctggccaacgaccacatcgaggcgctgggcgc
caagctggtgaccatctcagcgcagacgcccgacgagagcgaggagatga
tcaaggagatggagctgctgttccatgtgctcagcgacgacggcctcaag
gtggcggacaagtacggcattgcgttcaccgtcacagacggcatcaagaa
cctgtacaacgactttggcgtcgacctggacgccatcaacggcaacgagc
ggaaacgaaaggccAGATTGCCAGTGCCGGCCACGTTTGTGCTGGACAAG
AGCGGAAAGGTTCGCTTCGCATATGCCGATTTGGACTACACTACTCGGGC
AGAACCGCAGGATGTGGTGGAAGCTATCCAGGCCATCGTCGAGTGTGACG
GATGATCTGAGTGTTGTGGTATACTTTATCTTACTGGTAGTAGAGAAAAC
GAAACTGGTTCCCGTAGCAAGCTCTGTAATAGTGGGAGAAACTTGTAAAC
GTTGCGGGTCAAAAGCATTGTTTCTGCCATGACTTGTACAATTTAAAGCG
CGCCCATGACATACAGCACACTCGCTGTTTCGCAGCAGCGTTGCAGACGA
TGCCAGCGCTGCATGAGGAGCGAGCTGCTTGGTGGTCGCCCGCTGGCGGA
ACGCTCACCTGCCTGCGCGTCGTGTTCGTAGACCTTAATGAGCAACAGCG
GTGCGGCTTTTGCAGCGCTGCCTTGTTGCCTCGTTCCATGCGTCGACAGT
TGGAGCACGTTGCTCCTTTCCTGTTACGCTTCAGCGTCGGCTGCCTCTCC
TTTGGCAGCCGTGCGCGTTCTATTTGTGTGTCGGAGCTCCATTGACAGCT
TAGCTGCGCGTACAATCACAAGGCGATAACAAGTGTATCGCTCCTTGACA
CACATCATACTATCCAAGTTGGATACTCGACTTTGCGCACGCTCTGCACC
GGTGTTACTGTACGCAAAAGCGCACTCCTCCACCAACTTGGTTGTCCGTG
GCGATATTTTAAATATTTATCTAGATACAGTACACATGTCGCGCTCCCAA
CGTCATCGCATCTCCGTAGAATATGCATTCGATATCAGCTTATGGTGGTG
GTGGTGACACGTACAGTGTGTATCGATCATGTACCGTACCAAGGTGCAGT
GGTTCGCGTATTGAACGCTAAACTTGCGCACCTCCTTCACGTTCACAGCT
GCTGGGAACGACCGCCGCACTACTTCGAAAGAGGGAAATGCAAATCGGAG
CTGAATTTAAGCGCAACTATTGGCTGCCGTCGAAGAGAGTGTGTACTCGG
TCACTTCCTTCACGTCGAGGGGAGCGAAGCATTAAAGTTAAAGGTTGTGT
GCCGGTATAGTTCGAACTATACGTGCCCAATCCTAGTTGGCGAGCTCCAC
GCATTTGTCATGTCTAGTGTGTTGTCCTCACTCCTGACTAATGGTAAGGG
TTGATGTTTGGTTGTGTGTGCGTGCAATTGACCAATACGTTGCCTGCAAA
TCGGCACCAGTTCACAACTTCTTATCACAACAACGGACGCGGGGGAGCGC
AGAAGAATCCCCTTCACGAACAGATCGAAATGAATTCACGCACAAAGGTT
ACAGCGGGGCAAACGTTCAGCCCGCACCCTCTGCCACTGTGTGTGTTGCG
TTCTGCGTTCAGCGCTTCGCCGCAATCACACTGACGTTCACTGTATTCGA
GTCGCGAGCTGAACCAAACATCCCAAAACTTGAATACAACTTTCAGCTAT
CGTCAAAAGTTGGTCTCTAGCGCGCGCGAGTATGATACATTACTAACAAC
CGACCCATTTCGAAGCGGTGTCCGCTAAAGTTTACTAGCACGCTTTCCAC
AGCAACGCTTGTGCACATTCACTTTGCTGACCTGTCATCCACGTTGTCGC
CATCTTACACGTTGTCGCCATCTTACACGTTGTCGCCATTTGAGTGTCCC
CTTGTTTCTTTTTTTACCCTCTTTGCTCCACTGCAGCATTGGTGGAGTCT
GGGTGGCAGGAGTGAGCTCCGAGAGATGACGAGGAGTGTGTTTGAAGCAA
ACTCCTTTGCTACTTTTCCACGGAGGAGCATATAAATTAATCCTTGTCAA
CTTTGGCTTACATCCATTGTTCATCTCGAGCAAACAAGGACCTTACAAGA
AGGGGACGCTCAGTACTAAAAATCACACCGATGGTGCCTTCACTATAACA
GGGCGAGGGACAAATTCCATGGTTTCCTTGATAAGGATGAACATGTCATT
ATTATTGCTATCATTCGAACAGAATGAATAATATCAAACGGCCCTATGAG
CCTTGGCCTTTGTCAGCAACTTGACACACCTGGCTCTCTTCTCTTCTGTC
CCTCCCTTTGTCAGCTTTTGTCTCTTCTCAAGTCCATGTTGTTTACGCAA
ACGTTACTAAACCATGTGTGATGCCAGCAAACCCCAAGTCTGCGTTTGCA
ACTATTTTGCAAACCAATTGTGTATACATATGTGAGCCCGACATGTAATC
ATCGATATGATTCTGTGGCAAAGAAGATGGTTTCTTGCTTTTCCACCCCA
TGGGAAACCGTACCTCCGCGACGCGTCAGACTGGATTTTGGACTGCTCGA
AGAGCGAGAGTGCTGAGCGCACTCCACCATGTTATTCAAACGCCATGGGC
TCATTCGAATCAAACTCGTCAGCACTATCCAAATCTTTCAAGGGCGATGA
TGACAATTATGAGAGAGTTTGGGAACACATATATCTCTCTTTATGAATCT
GCCATTCGAGAGCAAGCCCACTCTATTGGCGCAGAAACGTTTCCATCTGC
TTTCCAAACTTTGTTGCAGGATACCGCTCCTTACAAGATAGAGCCCCCAG
GCAATCCTCACGCTCTTCTAGTATATGAACCCGTTCTGGAAACTTGTTTG
GACAGGCTGTCGCAGATGGTGGTCAGCCGCCCAGGCCCAATCTTGTCGTC
GTCATCGACTCTAACGACTGATGCTTCTGCTACACAGGAATATCCGTCAT
TATTTAAGGCGGCTGTCTTAATTGTTCAACATCAAGGCGAGAACCAGCTT
GGCTGCTGTCTGCTCATTCGATTACTTGACAAGATTCTTGTTCATGAAGA
CGAACATACTAGGGATCCTGGAGTGTGGGAACAGATGACAAACATATCGG
AGTTCCATGCCCTTCCCTACAATGACTGGATCGCAACCTCAGATATATTT
TGGATCAACTTGAGCAGATGAGGCATATTCTTCAGTCCCATAGACAGGAA
TTCGCAGACATCGCAGCGAGACTTTTTGACAGAATATCTGAAGGTCTTTT
TTCCTTTATCAAGCCTGTCTTGAAATTTCTAAGCACGACAGATGGTATTA
GGGTGTTAGAAAGTGGAATACAAACACTGGAGTACTCCATAACTTTACGG
GCTCAAATGGCACAAGCTGATAAGTTTTGGGGACTTTACGTTCTTCAAGG
GCTCGATGCTATTGGTCCCACCTTCCAAAGCGATCTGGGGGAAAATGGTT
TTACAAGAACATTCATTGGGGGGAAACGATATACAATTCGGTCACTTAGA
AAAAAACTCTTGCACAGAAACGCTGCAAGAAATCCAACGCCAGTTGCAAA
TGATGTCTTCACTGTCGCAATTTCGTACAAGCACTTTTGGGAGAATGAGA
GCGATAGGATCAGTGGACCAGATCTTCACGCAATTGCATCCTTCATCAAG
GCAAGTAGTGGTTCGCGGATAAGATTCTGGGTTGACACTAAGCTCCCTCC
AAGCAATGATGGTTCATTTGAAAGATGGTTGAGAAGAGGTGTAACGCCTT
ATTCCCGCTACTTGACACTTATTTGCCCATCTGCCGAAGCATCACAAGAT
CGGTTTTGGATAGCAAACGAGAAATACATCGGTATTGCCGGAAAAGGTAT
TTTCTATTTCCGTGGAGATGACATATTTTTCGACAAAGGCCATGAAGATT
TTAAGAAACTGGCAAAGCTTGCCCTCAAGCTAGCCGTCGGAGACGAGGAA
TGCCCACCCGGAGTTCGCCCTGAGGATCAAGGTAAAGCAGAGCAGTGGGC
CTTAGGCATTCTCGGAAGTCAACACAACAGTAGGAGCGTTAGCTTTCAAG
GGCCAAGAGCTGATGAACTATTCCGCGCTGACTTTGACGAAAATAGAGCT
ATTTGTCATATTCAAGTTGTCATAGGAGAAAATGGACCACAGAATCTGCC
GCTGGTTACAGGAAAAGAGTGGAACAAGTATAACCCTTTGATGAAAGGTA
ATGAAGGTCATCAAGAGCATCAGATGGTCAGCTGGATTGGGCTTGTACAT
CCCGAAGAGAAGAACAATGTGTACTTTTTGCATATGTATTTATTAACGAA
AATCAAAAAGCCCAGGCTCGTTGTTTTGCGTGTTCGACTTCGGCAACCAT
ATGATGAACAAGAAGGGAACTCCATTGAAGAAGAAGTTCTCATGATGATG
GATACTAGTGAATTACGAGAAATGCTTCCGGTGGCCGTGCCTCTCACTTG
CGATTGGAAAGTGTTCAATGGGAACTAA back to topCoding sequence (CDS) from alignment at tig00000077_pilon:82520..87347+ >Ggra2858.t1 ID=Ggra2858.t1|Name=Ggra2858.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000077_pilon:82520..87347+ (Gracilaria gracilis GNS1m male) ATGGCCCTCGTCAGCCCTCCTCCGCTCCCAGTGCTGCCCCCCCTCGCGCC CGTGCTCGAGGCCAAGAAGAAGGAGCTGTACTCCATCCTCCCGCCCGAGT TCCTGGCCGAGCTGGAGAGGACCTCCGCCGAGCTCGAGAAACTGTTCACC CCGACGCCGCTCCAATTGGGAGACATTGCCCCCTCGTTCACGCTCAATGA CGCGCTGGACAAGCCCGTCAGTCTGCAAGACCTGCTTGATTCGCACACCG CCGTGGTGGTCACCTGGTATCGTGgcGATACCGCTCCTTACAAGATAGAG CCCCCAGGCAATCCTCACGCTCTTCTAGTATATGAACCCGTTCTGGAAAC TTGTTTGGACAGGCTGTCGCAGATGGTGGTCAGCCGCCCAGGCCCAATCT TGTCGTCGTCATCGACTCTAACGACTGATGCTTCTGCTACACAGGAATAT CCGTCATTATTTAAGGCGGCTGTCTTAATTGTTCAACATCAAGGCGAGAA CCAGCTTGGCTGCTGTCTGCTCATTCGATTACTTGACAAGATTCTTGTTC ATGAAGACGAACATACTAGGGATCCTGGAATGAGGCATATTCTTCAGTCC CATAGACAGGAATTCGCAGACATCGCAGCGAGACTTTTTGACAGAATATC TGAAGGTCTTTTTTCCTTTATCAAGCCTGTCTTGAAATTTCTAAGCACGA CAGATGGTATTAGGGTGTTAGAAAGTGGAATACAAACACTGGAGTACTCC ATAACTTTACGGGCTCAAATGGCACAAGCTGATAAGTTTTGGGGACTTTA CGTTCTTCAAGGGCTCGATGCTATTGGTCCCACCTTCCAAAGCGATCTGG GGGAAAATGGTTTTACAAGAACATTCATTGGGGGGAAACGATATACAATT CGGTCACTTAGAAAAAAACTCTTGCACAGAAACGCTGCAAGAAATCCAAC GCCAGTTGCAAATGATGTCTTCACTGTCGCAATTTCGTACAAGCACTTTT GGGAGAATGAGAGCGATAGGATCAGTGGACCAGATCTTCACGCAATTGCA TCCTTCATCAAGGCAAGTAGTGGTTCGCGGATAAGATTCTGGGTTGACAC TAAGCTCCCTCCAAGCAATGATGGTTCATTTGAAAGATGGTTGAGAAGAG GTGTAACGCCTTATTCCCGCTACTTGACACTTATTTGCCCATCTGCCGAA GCATCACAAGATCGGTTTTGGATAGCAAACGAGAAATACATCGGTATTGC CGGAAAAGGTATTTTCTATTTCCGTGGAGATGACATATTTTTCGACAAAG GCCATGAAGATTTTAAGAAACTGGCAAAGCTTGCCCTCAAGCTAGCCGTC GGAGACGAGGAATGCCCACCCGGAGTTCGCCCTGAGGATCAAGGTAAAGC AGAGCAGTGGGCCTTAGGCATTCTCGGAAGTCAACACAACAGTAGGAGCG TTAGCTTTCAAGGGCCAAGAGCTGATGAACTATTCCGCGCTGACTTTGAC GAAAATAGAGCTATTTGTCATATTCAAGTTGTCATAGGAGAAAATGGACC ACAGAATCTGCCGCTGGTTACAGGAAAAGAGTGGAACAAGTATAACCCTT TGATGAAAGGTAATGAAGGTCATCAAGAGCATCAGATGGTCAGCTGGATT GGGCTTGTACATCCCGAAGAGAAGAACAATGTGTACTTTTTGCATATGTA TTTATTAACGAAAATCAAAAAGCCCAGGCTCGTTGTTTTGCGTGTTCGAC TTCGGCAACCATATGATGAACAAGAAGGGAACTCCATTGAAGAAGAAGTT CTCATGATGATGGATACTAGTGAATTACGAGAAATGCTTCCGGTGGCCGT GCCTCTCACTTGCGATTGGAAAGTGTTCAATGGGAACTAA back to top
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