Ggra2843.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2843.t1
Unique Name	Ggra2843.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000123_pilon	contig	tig00000123_pilon:441175..442725 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2843	Ggra2843	Gracilaria gracilis GNS1m male	gene	tig00000123_pilon 441175..442725 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2843.t1.stop1	Ggra2843.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000123_pilon 441175..441177 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2843.t1.CDS1	Ggra2843.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000123_pilon 441175..442725 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2843.t1.exon1	Ggra2843.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000123_pilon 441175..442725 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2843.t1.start1	Ggra2843.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000123_pilon 442723..442725 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2843.t1	Ggra2843.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000123_pilon 441175..442725 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000123_pilon:441175..442725-
coding sequence from alignment at tig00000123_pilon:441175..442725-

mRNA sequence

>Ggra2843.t1 ID=Ggra2843.t1|Name=Ggra2843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MCLIFTNQAYSASNTVLVLTPLATPSHLPQAWQLLYLNEMNPLIPSDTSN
PLMVVPIPNPHNMTETEFTLFSVSSSTASDIRSALNVVKSPYAPGGGHQP
ESNPNTVFGSMMVGSSSPFKPLAVQKIGGYKVTVAPSLKDLETRAPWGSY
SIPLAKVEYILKDVRERYGNRRFAFVIAEGESPKFGGPFTAGFGVMYRDG
RPHGGFLPISHEPNPQFQSSSASVTSTAHMDVTIIALGAIIKPLSLLGNA
KHWPLRMENVPKAGFGYSVNEVTQHVDPLSLTVRGPDQMADNAAMKWSAA
CQIHKALPRFGDGKVHSETFVQPEWPSVATVWTLKGLYPNRDLVARKANN
TDATVVKTLYSDIDAWFRVRSHKSSTLPKPYERLDTTLALLARQLAEPGI
QDRWSDSPDAVMGERVECRTVNYFNLDLDECDLDEEAYQEKDDRYRFLNI
SGHRKNVDTLGHTYIRISPFEGPFESIEMRTVGLKKEAEPLIGVKKQNEA
GHLTGLRKQTGRPVAK*

spliced messenger RNA

>Ggra2843.t1 ID=Ggra2843.t1|Name=Ggra2843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000123_pilon:441175..442725- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCTCATCTTCACCAACCAGGCGTACTCGGCATCCAACACAGTTCT
TGTCCTCACTCCCCTTGCAACACCGTCTCACCTTCCGCAAGCATGGCAAC
TCTTATACTTGAACGAAATGAACCCCCTCATACCCTCAGATACTTCCAAC
CCTCTCATGGTCGTTCCAATCCCAAATCCCCACAACATGACAGAAACTGA
ATTCACTCTTTTTTCGGTTTCAAGTTCCACGGCGTCCGACATTCGAAGCG
CTTTAAATGTCGTAAAATCTCCGTACGCGCCAGGTGGAGGACATCAACCT
GAATCGAATCCGAATACGGTCTTCGGCTCGATGATGGTTGGATCTTCCTC
TCCGTTCAAGCCCCTAGCCGTTCAAAAGATTGGAGGCTATAAGGTTACGG
TTGCCCCGTCTCTTAAGGATTTGGAAACTCGTGCACCATGGGGAAGCTAT
TCCATACCTCTTGCCAAGGTTGAATACATATTGAAGGATGTTCGTGAGCG
ATACGGAAACCGTCGTTTTGCGTTTGTGATCGCAGAAGGAGAGTCACCCA
AGTTTGGAGGTCCTTTCACTGCTGGTTTTGGTGTCATGTATCGAGATGGC
CGTCCACACGGCGGCTTTCTGCCCATAAGTCATGAACCTAATCCCCAATT
TCAATCTTCAAGCGCTAGTGTCACATCGACCGCCCATATGGACGTAACCA
TCATCGCTCTCGGGGCAATTATCAAACCGCTTTCATTGCTTGGAAATGCA
AAGCATTGGCCGCTAAGGATGGAAAACGTTCCAAAAGCTGGATTCGGTTA
TAGCGTCAATGAGGTAACGCAGCACGTCGACCCATTAAGTCTTACTGTCC
GAGGTCCAGACCAAATGGCCGACAATGCAGCCATGAAGTGGTCTGCGGCT
TGCCAGATCCACAAGGCGCTTCCCAGATTCGGTGATGGAAAAGTCCATTC
TGAGACATTTGTGCAGCCTGAATGGCCGTCTGTGGCCACGGTATGGACGC
TCAAGGGGTTGTATCCAAACCGGGATCTGGTCGCAAGAAAAGCAAATAAT
ACTGATGCAACTGTGGTAAAAACTCTTTATTCTGATATTGACGCCTGGTT
TAGAGTTCGAAGTCACAAGTCATCTACGCTACCGAAGCCTTACGAGCGAC
TCGATACGACTCTCGCTCTACTTGCCAGGCAACTTGCAGAACCCGGTATA
CAAGATAGATGGAGTGATTCCCCAGATGCAGTTATGGGTGAGAGAGTTGA
GTGTAGGACTGTGAACTATTTCAATCTTGACTTGGACGAATGTGACTTAG
ATGAAGAGGCTTATCAAGAAAAAGATGACCGTTATCGGTTTCTGAACATC
AGCGGGCACAGAAAAAATGTAGACACCCTTGGCCATACGTATATTCGCAT
ATCTCCATTTGAAGGTCCCTTCGAAAGCATTGAAATGCGCACTGTTGGGC
TGAAGAAGGAGGCTGAACCTTTGATTGGGGTGAAGAAGCAGAACGAGGCT
GGTCACTTGACTGGGCTAAGGAAGCAGACTGGCCGTCCTGTAGCGAAATA
G

protein sequence of Ggra2843.t1

>Ggra2843.t1 ID=Ggra2843.t1|Name=Ggra2843.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MCLIFTNQAYSASNTVLVLTPLATPSHLPQAWQLLYLNEMNPLIPSDTSN
PLMVVPIPNPHNMTETEFTLFSVSSSTASDIRSALNVVKSPYAPGGGHQP
ESNPNTVFGSMMVGSSSPFKPLAVQKIGGYKVTVAPSLKDLETRAPWGSY
SIPLAKVEYILKDVRERYGNRRFAFVIAEGESPKFGGPFTAGFGVMYRDG
RPHGGFLPISHEPNPQFQSSSASVTSTAHMDVTIIALGAIIKPLSLLGNA
KHWPLRMENVPKAGFGYSVNEVTQHVDPLSLTVRGPDQMADNAAMKWSAA
CQIHKALPRFGDGKVHSETFVQPEWPSVATVWTLKGLYPNRDLVARKANN
TDATVVKTLYSDIDAWFRVRSHKSSTLPKPYERLDTTLALLARQLAEPGI
QDRWSDSPDAVMGERVECRTVNYFNLDLDECDLDEEAYQEKDDRYRFLNI
SGHRKNVDTLGHTYIRISPFEGPFESIEMRTVGLKKEAEPLIGVKKQNEA
GHLTGLRKQTGRPVAK*

mRNA from alignment at tig00000123_pilon:441175..442725-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2843.t1 ID=Ggra2843.t1|Name=Ggra2843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000123_pilon:441175..442725- (Gracilaria gracilis GNS1m male)
ATGTGTCTCATCTTCACCAACCAGGCGTACTCGGCATCCAACACAGTTCT
TGTCCTCACTCCCCTTGCAACACCGTCTCACCTTCCGCAAGCATGGCAAC
TCTTATACTTGAACGAAATGAACCCCCTCATACCCTCAGATACTTCCAAC
CCTCTCATGGTCGTTCCAATCCCAAATCCCCACAACATGACAGAAACTGA
ATTCACTCTTTTTTCGGTTTCAAGTTCCACGGCGTCCGACATTCGAAGCG
CTTTAAATGTCGTAAAATCTCCGTACGCGCCAGGTGGAGGACATCAACCT
GAATCGAATCCGAATACGGTCTTCGGCTCGATGATGGTTGGATCTTCCTC
TCCGTTCAAGCCCCTAGCCGTTCAAAAGATTGGAGGCTATAAGGTTACGG
TTGCCCCGTCTCTTAAGGATTTGGAAACTCGTGCACCATGGGGAAGCTAT
TCCATACCTCTTGCCAAGGTTGAATACATATTGAAGGATGTTCGTGAGCG
ATACGGAAACCGTCGTTTTGCGTTTGTGATCGCAGAAGGAGAGTCACCCA
AGTTTGGAGGTCCTTTCACTGCTGGTTTTGGTGTCATGTATCGAGATGGC
CGTCCACACGGCGGCTTTCTGCCCATAAGTCATGAACCTAATCCCCAATT
TCAATCTTCAAGCGCTAGTGTCACATCGACCGCCCATATGGACGTAACCA
TCATCGCTCTCGGGGCAATTATCAAACCGCTTTCATTGCTTGGAAATGCA
AAGCATTGGCCGCTAAGGATGGAAAACGTTCCAAAAGCTGGATTCGGTTA
TAGCGTCAATGAGGTAACGCAGCACGTCGACCCATTAAGTCTTACTGTCC
GAGGTCCAGACCAAATGGCCGACAATGCAGCCATGAAGTGGTCTGCGGCT
TGCCAGATCCACAAGGCGCTTCCCAGATTCGGTGATGGAAAAGTCCATTC
TGAGACATTTGTGCAGCCTGAATGGCCGTCTGTGGCCACGGTATGGACGC
TCAAGGGGTTGTATCCAAACCGGGATCTGGTCGCAAGAAAAGCAAATAAT
ACTGATGCAACTGTGGTAAAAACTCTTTATTCTGATATTGACGCCTGGTT
TAGAGTTCGAAGTCACAAGTCATCTACGCTACCGAAGCCTTACGAGCGAC
TCGATACGACTCTCGCTCTACTTGCCAGGCAACTTGCAGAACCCGGTATA
CAAGATAGATGGAGTGATTCCCCAGATGCAGTTATGGGTGAGAGAGTTGA
GTGTAGGACTGTGAACTATTTCAATCTTGACTTGGACGAATGTGACTTAG
ATGAAGAGGCTTATCAAGAAAAAGATGACCGTTATCGGTTTCTGAACATC
AGCGGGCACAGAAAAAATGTAGACACCCTTGGCCATACGTATATTCGCAT
ATCTCCATTTGAAGGTCCCTTCGAAAGCATTGAAATGCGCACTGTTGGGC
TGAAGAAGGAGGCTGAACCTTTGATTGGGGTGAAGAAGCAGAACGAGGCT
GGTCACTTGACTGGGCTAAGGAAGCAGACTGGCCGTCCTGTAGCGAAATA
G

Coding sequence (CDS) from alignment at tig00000123_pilon:441175..442725-

>Ggra2843.t1 ID=Ggra2843.t1|Name=Ggra2843.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000123_pilon:441175..442725- (Gracilaria gracilis GNS1m male)
ATGTGTCTCATCTTCACCAACCAGGCGTACTCGGCATCCAACACAGTTCT
TGTCCTCACTCCCCTTGCAACACCGTCTCACCTTCCGCAAGCATGGCAAC
TCTTATACTTGAACGAAATGAACCCCCTCATACCCTCAGATACTTCCAAC
CCTCTCATGGTCGTTCCAATCCCAAATCCCCACAACATGACAGAAACTGA
ATTCACTCTTTTTTCGGTTTCAAGTTCCACGGCGTCCGACATTCGAAGCG
CTTTAAATGTCGTAAAATCTCCGTACGCGCCAGGTGGAGGACATCAACCT
GAATCGAATCCGAATACGGTCTTCGGCTCGATGATGGTTGGATCTTCCTC
TCCGTTCAAGCCCCTAGCCGTTCAAAAGATTGGAGGCTATAAGGTTACGG
TTGCCCCGTCTCTTAAGGATTTGGAAACTCGTGCACCATGGGGAAGCTAT
TCCATACCTCTTGCCAAGGTTGAATACATATTGAAGGATGTTCGTGAGCG
ATACGGAAACCGTCGTTTTGCGTTTGTGATCGCAGAAGGAGAGTCACCCA
AGTTTGGAGGTCCTTTCACTGCTGGTTTTGGTGTCATGTATCGAGATGGC
CGTCCACACGGCGGCTTTCTGCCCATAAGTCATGAACCTAATCCCCAATT
TCAATCTTCAAGCGCTAGTGTCACATCGACCGCCCATATGGACGTAACCA
TCATCGCTCTCGGGGCAATTATCAAACCGCTTTCATTGCTTGGAAATGCA
AAGCATTGGCCGCTAAGGATGGAAAACGTTCCAAAAGCTGGATTCGGTTA
TAGCGTCAATGAGGTAACGCAGCACGTCGACCCATTAAGTCTTACTGTCC
GAGGTCCAGACCAAATGGCCGACAATGCAGCCATGAAGTGGTCTGCGGCT
TGCCAGATCCACAAGGCGCTTCCCAGATTCGGTGATGGAAAAGTCCATTC
TGAGACATTTGTGCAGCCTGAATGGCCGTCTGTGGCCACGGTATGGACGC
TCAAGGGGTTGTATCCAAACCGGGATCTGGTCGCAAGAAAAGCAAATAAT
ACTGATGCAACTGTGGTAAAAACTCTTTATTCTGATATTGACGCCTGGTT
TAGAGTTCGAAGTCACAAGTCATCTACGCTACCGAAGCCTTACGAGCGAC
TCGATACGACTCTCGCTCTACTTGCCAGGCAACTTGCAGAACCCGGTATA
CAAGATAGATGGAGTGATTCCCCAGATGCAGTTATGGGTGAGAGAGTTGA
GTGTAGGACTGTGAACTATTTCAATCTTGACTTGGACGAATGTGACTTAG
ATGAAGAGGCTTATCAAGAAAAAGATGACCGTTATCGGTTTCTGAACATC
AGCGGGCACAGAAAAAATGTAGACACCCTTGGCCATACGTATATTCGCAT
ATCTCCATTTGAAGGTCCCTTCGAAAGCATTGAAATGCGCACTGTTGGGC
TGAAGAAGGAGGCTGAACCTTTGATTGGGGTGAAGAAGCAGAACGAGGCT
GGTCACTTGACTGGGCTAAGGAAGCAGACTGGCCGTCCTGTAGCGAAATA
G