Ggra2841.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2841.t1
Unique NameGgra2841.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:435417..436115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2841Ggra2841Gracilaria gracilis GNS1m malegenetig00000123_pilon 435417..436115 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2841.t1.stop1Ggra2841.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 435417..435419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2841.t1.CDS1Ggra2841.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 435417..436115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2841.t1.exon1Ggra2841.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 435417..436115 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2841.t1.start1Ggra2841.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 436113..436115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2841.t1Ggra2841.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 435417..436115 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2841.t1 ID=Ggra2841.t1|Name=Ggra2841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MTPGELRQVSLEYELFQSMLQSGSTLFGCINSNECSSGIVGVRGALVTLL
MIKGVEQGSIPRVVLECRCSSRLAVLNTADEVADPKLTMARVQRVRDHQE
DGFSERLEVSLLEWRLWNTCKEVSGLLKKLQNNRMTPRILEQELAVWAPK
AYDREIKEHEWEATPEVTRQVFWDRAECFSFGILRCMEGDEDVTRKAREM
TRTSERLRLALAFVQEKRAVTYAQLSLKNALD*
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spliced messenger RNA

>Ggra2841.t1 ID=Ggra2841.t1|Name=Ggra2841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000123_pilon:435417..436115- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCCGGGGAGCTTCGTCAAGTATCTTTGGAATACGAATTATTCCA
GTCAATGCTTCAGAGTGGTTCTACACTCTTCGGCTGCATTAACTCGAACG
AATGTTCATCTGGTATTGTTGGTGTTCGCGGAGCGCTGGTGACGTTGCTC
ATGATAAAAGGGGTTGAACAAGGCAGTATTCCCAGGGTTGTACTCGAATG
TCGTTGCTCTAGTAGACTTGCTGTTTTGAATACTGCCGATGAAGTTGCGG
ATCCCAAACTCACAATGGCCCGCGTTCAACGAGTGCGCGACCATCAAGAA
GATGGGTTCTCAGAACGACTTGAAGTCTCCCTTTTGGAGTGGCGTCTTTG
GAACACCTGCAAGGAAGTCAGTGGCCTCCTAAAGAAGCTTCAAAACAATC
GGATGACACCCAGAATCTTGGAACAAGAACTGGCTGTCTGGGCCCCTAAG
GCATATGACAGGGAGATTAAGGAACATGAATGGGAGGCTACCCCTGAGGT
CACTCGACAGGTGTTTTGGGATAGAGCAGAGTGCTTTAGTTTTGGAATAT
TAAGATGTATGGAGGGAGATGAGGATGTCACACGGAAAGCAAGAGAAATG
ACAAGGACATCCGAAAGGTTGCGCCTGGCTCTGGCTTTTGTCCAAGAGAA
GAGGGCTGTTACTTACGCGCAACTGAGTCTTAAGAATGCTTTAGACTAA
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protein sequence of Ggra2841.t1

>Ggra2841.t1 ID=Ggra2841.t1|Name=Ggra2841.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MTPGELRQVSLEYELFQSMLQSGSTLFGCINSNECSSGIVGVRGALVTLL
MIKGVEQGSIPRVVLECRCSSRLAVLNTADEVADPKLTMARVQRVRDHQE
DGFSERLEVSLLEWRLWNTCKEVSGLLKKLQNNRMTPRILEQELAVWAPK
AYDREIKEHEWEATPEVTRQVFWDRAECFSFGILRCMEGDEDVTRKAREM
TRTSERLRLALAFVQEKRAVTYAQLSLKNALD*
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mRNA from alignment at tig00000123_pilon:435417..436115-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2841.t1 ID=Ggra2841.t1|Name=Ggra2841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000123_pilon:435417..436115- (Gracilaria gracilis GNS1m male)
ATGACCCCCGGGGAGCTTCGTCAAGTATCTTTGGAATACGAATTATTCCA
GTCAATGCTTCAGAGTGGTTCTACACTCTTCGGCTGCATTAACTCGAACG
AATGTTCATCTGGTATTGTTGGTGTTCGCGGAGCGCTGGTGACGTTGCTC
ATGATAAAAGGGGTTGAACAAGGCAGTATTCCCAGGGTTGTACTCGAATG
TCGTTGCTCTAGTAGACTTGCTGTTTTGAATACTGCCGATGAAGTTGCGG
ATCCCAAACTCACAATGGCCCGCGTTCAACGAGTGCGCGACCATCAAGAA
GATGGGTTCTCAGAACGACTTGAAGTCTCCCTTTTGGAGTGGCGTCTTTG
GAACACCTGCAAGGAAGTCAGTGGCCTCCTAAAGAAGCTTCAAAACAATC
GGATGACACCCAGAATCTTGGAACAAGAACTGGCTGTCTGGGCCCCTAAG
GCATATGACAGGGAGATTAAGGAACATGAATGGGAGGCTACCCCTGAGGT
CACTCGACAGGTGTTTTGGGATAGAGCAGAGTGCTTTAGTTTTGGAATAT
TAAGATGTATGGAGGGAGATGAGGATGTCACACGGAAAGCAAGAGAAATG
ACAAGGACATCCGAAAGGTTGCGCCTGGCTCTGGCTTTTGTCCAAGAGAA
GAGGGCTGTTACTTACGCGCAACTGAGTCTTAAGAATGCTTTAGACTAA
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Coding sequence (CDS) from alignment at tig00000123_pilon:435417..436115-

>Ggra2841.t1 ID=Ggra2841.t1|Name=Ggra2841.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000123_pilon:435417..436115- (Gracilaria gracilis GNS1m male)
ATGACCCCCGGGGAGCTTCGTCAAGTATCTTTGGAATACGAATTATTCCA
GTCAATGCTTCAGAGTGGTTCTACACTCTTCGGCTGCATTAACTCGAACG
AATGTTCATCTGGTATTGTTGGTGTTCGCGGAGCGCTGGTGACGTTGCTC
ATGATAAAAGGGGTTGAACAAGGCAGTATTCCCAGGGTTGTACTCGAATG
TCGTTGCTCTAGTAGACTTGCTGTTTTGAATACTGCCGATGAAGTTGCGG
ATCCCAAACTCACAATGGCCCGCGTTCAACGAGTGCGCGACCATCAAGAA
GATGGGTTCTCAGAACGACTTGAAGTCTCCCTTTTGGAGTGGCGTCTTTG
GAACACCTGCAAGGAAGTCAGTGGCCTCCTAAAGAAGCTTCAAAACAATC
GGATGACACCCAGAATCTTGGAACAAGAACTGGCTGTCTGGGCCCCTAAG
GCATATGACAGGGAGATTAAGGAACATGAATGGGAGGCTACCCCTGAGGT
CACTCGACAGGTGTTTTGGGATAGAGCAGAGTGCTTTAGTTTTGGAATAT
TAAGATGTATGGAGGGAGATGAGGATGTCACACGGAAAGCAAGAGAAATG
ACAAGGACATCCGAAAGGTTGCGCCTGGCTCTGGCTTTTGTCCAAGAGAA
GAGGGCTGTTACTTACGCGCAACTGAGTCTTAAGAATGCTTTAGACTAA
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