Ggra2790.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2790.t1
Unique NameGgra2790.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000123_piloncontigtig00000123_pilon:93059..93697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2790Ggra2790Gracilaria gracilis GNS1m malegenetig00000123_pilon 93059..93697 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2790.t1.start1Ggra2790.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000123_pilon 93059..93061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2790.t1.CDS1Ggra2790.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000123_pilon 93059..93697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2790.t1.exon1Ggra2790.t1.exon1Gracilaria gracilis GNS1m maleexontig00000123_pilon 93059..93697 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2790.t1.stop1Ggra2790.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000123_pilon 93695..93697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2790.t1Ggra2790.t1Gracilaria gracilis GNS1m malepolypeptidetig00000123_pilon 93059..93697 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2790.t1 ID=Ggra2790.t1|Name=Ggra2790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MSSKKPVDREETVEKTGSDSRGDGLVESGIDSNVSTSGKDEHEEPKERPS
HNYGLKGTGIVSRKRAHFMATQVTALQRGAKRVEELARTSKMRSTVAEEF
LAVERQKSMFTFFSLPDDDVEMREKYMNAVAQKALAEVEKAAALQNHNSQ
PYHVPNCFYFMQPEESDTIRIESSSSRSTQGSVTLTTSSVRDPPSATNDL
HFNAGDSLTHQG*
back to top

spliced messenger RNA

>Ggra2790.t1 ID=Ggra2790.t1|Name=Ggra2790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000123_pilon:93059..93697+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCAAGAAACCTGTGGACAGGGAAGAAACTGTTGAGAAAACAGG
ATCTGATAGCAGAGGCGATGGCCTTGTAGAAAGCGGTATTGATAGCAACG
TTAGTACCTCTGGTAAAGATGAACATGAAGAGCCCAAGGAGCGTCCTTCT
CATAACTACGGTTTGAAGGGTACTGGAATTGTTAGTAGGAAAAGAGCACA
CTTTATGGCAACCCAAGTGACGGCCTTACAAAGGGGTGCCAAGCGTGTTG
AAGAACTGGCGAGAACCTCGAAGATGCGCAGCACTGTAGCTGAAGAGTTT
CTAGCTGTTGAACGACAGAAATCTATGTTTACGTTCTTTTCTTTACCTGA
TGATGATGTTGAAATGCGAGAGAAGTACATGAACGCGGTTGCTCAGAAGG
CACTCGCTGAGGTTGAAAAGGCAGCGGCGCTACAAAATCACAATTCTCAG
CCGTATCATGTCCCGAACTGCTTCTATTTTATGCAGCCAGAGGAGTCAGA
CACTATACGAATTGAATCATCTTCTTCACGTAGCACACAGGGTTCCGTTA
CACTGACCACATCCAGTGTTCGTGACCCTCCATCCGCTACAAACGACTTA
CATTTCAATGCAGGAGATTCTTTGACGCACCAAGGATAG
back to top

protein sequence of Ggra2790.t1

>Ggra2790.t1 ID=Ggra2790.t1|Name=Ggra2790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MSSKKPVDREETVEKTGSDSRGDGLVESGIDSNVSTSGKDEHEEPKERPS
HNYGLKGTGIVSRKRAHFMATQVTALQRGAKRVEELARTSKMRSTVAEEF
LAVERQKSMFTFFSLPDDDVEMREKYMNAVAQKALAEVEKAAALQNHNSQ
PYHVPNCFYFMQPEESDTIRIESSSSRSTQGSVTLTTSSVRDPPSATNDL
HFNAGDSLTHQG*
back to top

mRNA from alignment at tig00000123_pilon:93059..93697+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2790.t1 ID=Ggra2790.t1|Name=Ggra2790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000123_pilon:93059..93697+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCAAGAAACCTGTGGACAGGGAAGAAACTGTTGAGAAAACAGG
ATCTGATAGCAGAGGCGATGGCCTTGTAGAAAGCGGTATTGATAGCAACG
TTAGTACCTCTGGTAAAGATGAACATGAAGAGCCCAAGGAGCGTCCTTCT
CATAACTACGGTTTGAAGGGTACTGGAATTGTTAGTAGGAAAAGAGCACA
CTTTATGGCAACCCAAGTGACGGCCTTACAAAGGGGTGCCAAGCGTGTTG
AAGAACTGGCGAGAACCTCGAAGATGCGCAGCACTGTAGCTGAAGAGTTT
CTAGCTGTTGAACGACAGAAATCTATGTTTACGTTCTTTTCTTTACCTGA
TGATGATGTTGAAATGCGAGAGAAGTACATGAACGCGGTTGCTCAGAAGG
CACTCGCTGAGGTTGAAAAGGCAGCGGCGCTACAAAATCACAATTCTCAG
CCGTATCATGTCCCGAACTGCTTCTATTTTATGCAGCCAGAGGAGTCAGA
CACTATACGAATTGAATCATCTTCTTCACGTAGCACACAGGGTTCCGTTA
CACTGACCACATCCAGTGTTCGTGACCCTCCATCCGCTACAAACGACTTA
CATTTCAATGCAGGAGATTCTTTGACGCACCAAGGATAG
back to top

Coding sequence (CDS) from alignment at tig00000123_pilon:93059..93697+

>Ggra2790.t1 ID=Ggra2790.t1|Name=Ggra2790.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000123_pilon:93059..93697+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCAAGAAACCTGTGGACAGGGAAGAAACTGTTGAGAAAACAGG
ATCTGATAGCAGAGGCGATGGCCTTGTAGAAAGCGGTATTGATAGCAACG
TTAGTACCTCTGGTAAAGATGAACATGAAGAGCCCAAGGAGCGTCCTTCT
CATAACTACGGTTTGAAGGGTACTGGAATTGTTAGTAGGAAAAGAGCACA
CTTTATGGCAACCCAAGTGACGGCCTTACAAAGGGGTGCCAAGCGTGTTG
AAGAACTGGCGAGAACCTCGAAGATGCGCAGCACTGTAGCTGAAGAGTTT
CTAGCTGTTGAACGACAGAAATCTATGTTTACGTTCTTTTCTTTACCTGA
TGATGATGTTGAAATGCGAGAGAAGTACATGAACGCGGTTGCTCAGAAGG
CACTCGCTGAGGTTGAAAAGGCAGCGGCGCTACAAAATCACAATTCTCAG
CCGTATCATGTCCCGAACTGCTTCTATTTTATGCAGCCAGAGGAGTCAGA
CACTATACGAATTGAATCATCTTCTTCACGTAGCACACAGGGTTCCGTTA
CACTGACCACATCCAGTGTTCGTGACCCTCCATCCGCTACAAACGACTTA
CATTTCAATGCAGGAGATTCTTTGACGCACCAAGGATAG
back to top