Ggra2686.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2686.t1
Unique NameGgra2686.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1234235..1235308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2686Ggra2686Gracilaria gracilis GNS1m malegenetig00000005_pilon 1234235..1235308 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2686.t1.stop1Ggra2686.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1234235..1234237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2686.t1.CDS1Ggra2686.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1234235..1235308 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2686.t1.exon1Ggra2686.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1234235..1235308 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2686.t1.start1Ggra2686.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1235306..1235308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2686.t1Ggra2686.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1234235..1235308 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2686.t1 ID=Ggra2686.t1|Name=Ggra2686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MYPSPSMCSQKPDVKKSPLLAAAFAALTCLSIKPPAPVLAVHQDTDTTHS
IQIAPEMRNNYGTMTPEGTLLRVMPEKKLQTGPGFYPSQNAPSVPSHSNT
TNYQGKMNAMPEWAAVRMRHSIYPHRTTRAMALRPTALGLVSVSALTSGS
VLLRNAARKRKPRVSEPMREDQEICSVVSIHIPFCVSERGSMMEKLQELE
NKVNLLSPDGMACAAREAARILLSEERLLEDSRKFAPKVDVFLAEDMRCA
EKRFAGHVEIEAHRVDRIQNCSQNAPASSRKYGVVTIVVATTEGVDLACY
DEEATVICRLRGALDRISRLRGGQVAGLELQWIPGVSEKRWLTRAQLCEA
FPGLKVL*
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spliced messenger RNA

>Ggra2686.t1 ID=Ggra2686.t1|Name=Ggra2686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000005_pilon:1234235..1235308- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCGTCGCCTAGCATGTGCTCTCAAAAGCCAGATGTCAAGAAATC
GCCTCTTCTTGCGGCAGCGTTCGCTGCTCTGACTTGTCTTTCGATTAAAC
CCCCTGCTCCAGTGTTGGCAGTTCATCAGGACACGGATACAACTCATTCA
ATACAGATAGCTCCCGAAATGCGAAACAACTACGGTACAATGACACCTGA
GGGAACGCTCCTTCGCGTTATGCCCGAGAAGAAACTGCAGACAGGGCCTG
GCTTCTATCCAAGTCAAAACGCCCCAAGCGTCCCATCACACAGCAACACT
ACGAACTATCAGGGGAAGATGAACGCAATGCCCGAATGGGCTGCAGTTCG
AATGAGGCATTCTATATACCCTCATCGCACCACTAGGGCTATGGCTTTGC
GCCCTACGGCACTGGGGCTTGTGAGCGTCAGCGCACTCACATCTGGATCA
GTACTGCTAAGAAATGCAGCGCGGAAGCGAAAACCACGAGTGAGCGAACC
CATGCGCGAAGATCAGGAGATTTGTTCTGTCGTTTCTATACATATTCCTT
TTTGCGTATCCGAGCGCGGGAGCATGATGGAAAAGCTACAAGAGCTTGAG
AACAAAGTCAACTTGCTGAGTCCTGATGGAATGGCTTGCGCTGCACGTGA
GGCGGCAAGAATTCTCTTAAGCGAAGAAAGGTTGCTCGAAGATTCTAGAA
AGTTTGCCCCAAAGGTCGACGTATTCCTCGCTGAAGACATGAGGTGCGCA
GAAAAGCGATTTGCTGGACATGTTGAGATAGAAGCGCACCGTGTCGATCG
TATTCAGAACTGTAGCCAGAATGCTCCAGCGTCGTCACGAAAATACGGCG
TCGTGACAATAGTTGTCGCAACAACTGAAGGAGTGGATCTTGCTTGCTAT
GACGAAGAAGCCACCGTTATTTGTCGATTGCGTGGCGCTTTGGACCGCAT
ATCTAGGCTCCGAGGTGGACAAGTCGCTGGACTTGAGTTGCAATGGATTC
CTGGAGTTTCCGAAAAGAGGTGGTTGACTAGGGCACAGCTTTGCGAAGCT
TTTCCGGGCTTAAAAGTACTCTAG
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protein sequence of Ggra2686.t1

>Ggra2686.t1 ID=Ggra2686.t1|Name=Ggra2686.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MYPSPSMCSQKPDVKKSPLLAAAFAALTCLSIKPPAPVLAVHQDTDTTHS
IQIAPEMRNNYGTMTPEGTLLRVMPEKKLQTGPGFYPSQNAPSVPSHSNT
TNYQGKMNAMPEWAAVRMRHSIYPHRTTRAMALRPTALGLVSVSALTSGS
VLLRNAARKRKPRVSEPMREDQEICSVVSIHIPFCVSERGSMMEKLQELE
NKVNLLSPDGMACAAREAARILLSEERLLEDSRKFAPKVDVFLAEDMRCA
EKRFAGHVEIEAHRVDRIQNCSQNAPASSRKYGVVTIVVATTEGVDLACY
DEEATVICRLRGALDRISRLRGGQVAGLELQWIPGVSEKRWLTRAQLCEA
FPGLKVL*
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mRNA from alignment at tig00000005_pilon:1234235..1235308-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2686.t1 ID=Ggra2686.t1|Name=Ggra2686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000005_pilon:1234235..1235308- (Gracilaria gracilis GNS1m male)
ATGTATCCGTCGCCTAGCATGTGCTCTCAAAAGCCAGATGTCAAGAAATC
GCCTCTTCTTGCGGCAGCGTTCGCTGCTCTGACTTGTCTTTCGATTAAAC
CCCCTGCTCCAGTGTTGGCAGTTCATCAGGACACGGATACAACTCATTCA
ATACAGATAGCTCCCGAAATGCGAAACAACTACGGTACAATGACACCTGA
GGGAACGCTCCTTCGCGTTATGCCCGAGAAGAAACTGCAGACAGGGCCTG
GCTTCTATCCAAGTCAAAACGCCCCAAGCGTCCCATCACACAGCAACACT
ACGAACTATCAGGGGAAGATGAACGCAATGCCCGAATGGGCTGCAGTTCG
AATGAGGCATTCTATATACCCTCATCGCACCACTAGGGCTATGGCTTTGC
GCCCTACGGCACTGGGGCTTGTGAGCGTCAGCGCACTCACATCTGGATCA
GTACTGCTAAGAAATGCAGCGCGGAAGCGAAAACCACGAGTGAGCGAACC
CATGCGCGAAGATCAGGAGATTTGTTCTGTCGTTTCTATACATATTCCTT
TTTGCGTATCCGAGCGCGGGAGCATGATGGAAAAGCTACAAGAGCTTGAG
AACAAAGTCAACTTGCTGAGTCCTGATGGAATGGCTTGCGCTGCACGTGA
GGCGGCAAGAATTCTCTTAAGCGAAGAAAGGTTGCTCGAAGATTCTAGAA
AGTTTGCCCCAAAGGTCGACGTATTCCTCGCTGAAGACATGAGGTGCGCA
GAAAAGCGATTTGCTGGACATGTTGAGATAGAAGCGCACCGTGTCGATCG
TATTCAGAACTGTAGCCAGAATGCTCCAGCGTCGTCACGAAAATACGGCG
TCGTGACAATAGTTGTCGCAACAACTGAAGGAGTGGATCTTGCTTGCTAT
GACGAAGAAGCCACCGTTATTTGTCGATTGCGTGGCGCTTTGGACCGCAT
ATCTAGGCTCCGAGGTGGACAAGTCGCTGGACTTGAGTTGCAATGGATTC
CTGGAGTTTCCGAAAAGAGGTGGTTGACTAGGGCACAGCTTTGCGAAGCT
TTTCCGGGCTTAAAAGTACTCTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1234235..1235308-

>Ggra2686.t1 ID=Ggra2686.t1|Name=Ggra2686.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000005_pilon:1234235..1235308- (Gracilaria gracilis GNS1m male)
ATGTATCCGTCGCCTAGCATGTGCTCTCAAAAGCCAGATGTCAAGAAATC
GCCTCTTCTTGCGGCAGCGTTCGCTGCTCTGACTTGTCTTTCGATTAAAC
CCCCTGCTCCAGTGTTGGCAGTTCATCAGGACACGGATACAACTCATTCA
ATACAGATAGCTCCCGAAATGCGAAACAACTACGGTACAATGACACCTGA
GGGAACGCTCCTTCGCGTTATGCCCGAGAAGAAACTGCAGACAGGGCCTG
GCTTCTATCCAAGTCAAAACGCCCCAAGCGTCCCATCACACAGCAACACT
ACGAACTATCAGGGGAAGATGAACGCAATGCCCGAATGGGCTGCAGTTCG
AATGAGGCATTCTATATACCCTCATCGCACCACTAGGGCTATGGCTTTGC
GCCCTACGGCACTGGGGCTTGTGAGCGTCAGCGCACTCACATCTGGATCA
GTACTGCTAAGAAATGCAGCGCGGAAGCGAAAACCACGAGTGAGCGAACC
CATGCGCGAAGATCAGGAGATTTGTTCTGTCGTTTCTATACATATTCCTT
TTTGCGTATCCGAGCGCGGGAGCATGATGGAAAAGCTACAAGAGCTTGAG
AACAAAGTCAACTTGCTGAGTCCTGATGGAATGGCTTGCGCTGCACGTGA
GGCGGCAAGAATTCTCTTAAGCGAAGAAAGGTTGCTCGAAGATTCTAGAA
AGTTTGCCCCAAAGGTCGACGTATTCCTCGCTGAAGACATGAGGTGCGCA
GAAAAGCGATTTGCTGGACATGTTGAGATAGAAGCGCACCGTGTCGATCG
TATTCAGAACTGTAGCCAGAATGCTCCAGCGTCGTCACGAAAATACGGCG
TCGTGACAATAGTTGTCGCAACAACTGAAGGAGTGGATCTTGCTTGCTAT
GACGAAGAAGCCACCGTTATTTGTCGATTGCGTGGCGCTTTGGACCGCAT
ATCTAGGCTCCGAGGTGGACAAGTCGCTGGACTTGAGTTGCAATGGATTC
CTGGAGTTTCCGAAAAGAGGTGGTTGACTAGGGCACAGCTTTGCGAAGCT
TTTCCGGGCTTAAAAGTACTCTAG
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