Ggra2683.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2683.t1
Unique Name	Ggra2683.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:1228525..1230255 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2683	Ggra2683	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 1228525..1230255 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2683.t1.stop1	Ggra2683.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 1228525..1228527 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2683.t1.CDS1	Ggra2683.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 1228525..1230255 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2683.t1.exon1	Ggra2683.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 1228525..1230255 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2683.t1.start1	Ggra2683.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 1230253..1230255 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2683.t1	Ggra2683.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 1228525..1230255 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:1228525..1230255-
coding sequence from alignment at tig00000005_pilon:1228525..1230255-

mRNA sequence

>Ggra2683.t1 ID=Ggra2683.t1|Name=Ggra2683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=577bp
MMLLTFVTSPTFVTKNFVPSGRCRVHLVNHAKRKIIIVSDARSNNGKVHS
DRMQQMNSRSSSKQADDSMSSDIRNNAERKAQYDFFSEQLGMAIDSNLKQ
TKHDRLLGDAPSTNSNIPSNEALGQNTTEAGERERVEVNPADYDLFDQLL
QNTGGTGRKPVKGAKPFTSVEDREVFSRKANRAANSPQDRNIKIGNVEKG
LEEDSLKASDSDSGVRSLNENMNSVSTSYELMREEFGEGFHDLGQRPPTY
DSNHKKIDESPPTVLQERPKRPNRPENTNPNTTTAASVSSSFKVSSPVEQ
MNRNAEDPSKEKAITAASYDLMREEFGAGFRDVGQSSTSDDTGKRENAES
PPPVLQDRPKRPVHKEKTYVDNDIKSATADDINSLNTSSPPPKLNVPPQR
YFPVIEKDEAGVPLQSVSSLDDIRSGSVLPLRKGAKSSPEENNIDPNSHP
TESSRNATQGITGEDIVPKNVENIESGIDLSGRDYEVRHSTPSALENDEV
LSTSEGLDMNSRAGEKMPRLSEQGRPERSKGNNSRTNRRFRGPQRLNSEG
TEWRPNVEAYVLGHPKFVCRQITPSA*

spliced messenger RNA

>Ggra2683.t1 ID=Ggra2683.t1|Name=Ggra2683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000005_pilon:1228525..1230255- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTGCTGACGTTTGTTACATCCCCGACTTTTGTTACGAAGAACTT
TGTACCTTCCGGTCGCTGCCGGGTTCATCTTGTTAACCACGCCAAAAGGA
AAATCATTATCGTTTCCGACGCCAGAAGCAACAATGGCAAGGTTCATTCG
GACCGGATGCAGCAAATGAACTCAAGAAGCTCCAGTAAACAAGCAGATGA
TTCCATGTCATCAGATATCAGAAATAACGCGGAAAGAAAGGCACAGTATG
ATTTCTTCAGCGAACAACTTGGAATGGCAATTGACAGCAATCTGAAGCAG
ACCAAACATGATCGTCTGCTGGGCGATGCTCCTTCCACGAATTCAAACAT
ACCATCGAATGAAGCCCTTGGGCAGAATACAACGGAAGCAGGGGAAAGAG
AACGTGTCGAAGTTAACCCTGCAGATTATGATCTCTTTGATCAGCTTCTT
CAAAACACAGGGGGAACTGGAAGGAAGCCCGTAAAGGGTGCAAAACCGTT
CACATCGGTCGAAGACCGTGAAGTGTTTTCACGAAAAGCTAACAGGGCGG
CAAACTCGCCCCAAGATCGAAACATTAAAATAGGAAACGTGGAGAAAGGA
CTAGAAGAAGATAGTCTCAAAGCATCCGACAGCGACAGCGGAGTACGAAG
TCTGAATGAAAACATGAACTCGGTTTCCACGTCCTATGAGCTTATGAGAG
AAGAATTCGGCGAAGGCTTCCATGATCTTGGTCAAAGACCTCCGACATAT
GACTCTAATCACAAGAAAATCGATGAAAGCCCGCCGACGGTTCTTCAAGA
GCGTCCGAAGCGTCCTAACCGCCCGGAAAATACTAATCCGAACACTACCA
CGGCAGCGTCTGTGTCTTCCAGTTTCAAAGTATCCAGTCCCGTGGAACAA
ATGAACCGCAACGCTGAAGACCCTTCCAAAGAAAAAGCTATTACCGCAGC
CTCCTACGACCTCATGAGAGAAGAATTTGGAGCAGGGTTTCGCGATGTTG
GCCAGAGCTCGACTTCAGATGATACCGGGAAGCGGGAAAATGCCGAGAGT
CCACCTCCAGTTCTTCAAGATCGGCCTAAGCGACCAGTGCACAAAGAAAA
GACATATGTGGATAATGATATCAAATCGGCAACAGCTGATGACATCAATA
GCTTAAATACTAGTAGCCCTCCACCGAAGTTAAATGTCCCTCCCCAAAGG
TATTTCCCCGTAATAGAGAAAGACGAGGCCGGTGTACCGCTGCAGAGTGT
TTCATCATTGGATGACATACGAAGTGGGTCTGTTCTGCCGCTAAGAAAAG
GAGCAAAGTCTTCTCCTGAGGAAAACAATATTGATCCGAACTCACATCCG
ACTGAAAGCTCACGCAATGCAACACAAGGGATCACAGGGGAAGATATTGT
TCCCAAGAATGTGGAGAACATTGAAAGTGGTATCGACTTGTCTGGCAGAG
ATTACGAGGTGAGACATTCAACCCCATCTGCTTTAGAGAATGATGAGGTG
CTAAGCACATCGGAAGGTCTCGACATGAACTCTAGAGCAGGCGAGAAAAT
GCCTCGGCTATCAGAACAGGGGCGCCCAGAGCGAAGCAAAGGCAACAACT
CGCGCACGAACCGGAGATTCAGAGGACCTCAACGCCTAAATTCAGAGGGA
ACGGAGTGGCGACCCAATGTCGAGGCCTATGTACTAGGACATCCGAAGTT
CGTCTGTAGGCAAATTACTCCGAGCGCATAA

protein sequence of Ggra2683.t1

>Ggra2683.t1 ID=Ggra2683.t1|Name=Ggra2683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=577bp
MMLLTFVTSPTFVTKNFVPSGRCRVHLVNHAKRKIIIVSDARSNNGKVHS
DRMQQMNSRSSSKQADDSMSSDIRNNAERKAQYDFFSEQLGMAIDSNLKQ
TKHDRLLGDAPSTNSNIPSNEALGQNTTEAGERERVEVNPADYDLFDQLL
QNTGGTGRKPVKGAKPFTSVEDREVFSRKANRAANSPQDRNIKIGNVEKG
LEEDSLKASDSDSGVRSLNENMNSVSTSYELMREEFGEGFHDLGQRPPTY
DSNHKKIDESPPTVLQERPKRPNRPENTNPNTTTAASVSSSFKVSSPVEQ
MNRNAEDPSKEKAITAASYDLMREEFGAGFRDVGQSSTSDDTGKRENAES
PPPVLQDRPKRPVHKEKTYVDNDIKSATADDINSLNTSSPPPKLNVPPQR
YFPVIEKDEAGVPLQSVSSLDDIRSGSVLPLRKGAKSSPEENNIDPNSHP
TESSRNATQGITGEDIVPKNVENIESGIDLSGRDYEVRHSTPSALENDEV
LSTSEGLDMNSRAGEKMPRLSEQGRPERSKGNNSRTNRRFRGPQRLNSEG
TEWRPNVEAYVLGHPKFVCRQITPSA*

mRNA from alignment at tig00000005_pilon:1228525..1230255-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2683.t1 ID=Ggra2683.t1|Name=Ggra2683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000005_pilon:1228525..1230255- (Gracilaria gracilis GNS1m male)
ATGATGTTGCTGACGTTTGTTACATCCCCGACTTTTGTTACGAAGAACTT
TGTACCTTCCGGTCGCTGCCGGGTTCATCTTGTTAACCACGCCAAAAGGA
AAATCATTATCGTTTCCGACGCCAGAAGCAACAATGGCAAGGTTCATTCG
GACCGGATGCAGCAAATGAACTCAAGAAGCTCCAGTAAACAAGCAGATGA
TTCCATGTCATCAGATATCAGAAATAACGCGGAAAGAAAGGCACAGTATG
ATTTCTTCAGCGAACAACTTGGAATGGCAATTGACAGCAATCTGAAGCAG
ACCAAACATGATCGTCTGCTGGGCGATGCTCCTTCCACGAATTCAAACAT
ACCATCGAATGAAGCCCTTGGGCAGAATACAACGGAAGCAGGGGAAAGAG
AACGTGTCGAAGTTAACCCTGCAGATTATGATCTCTTTGATCAGCTTCTT
CAAAACACAGGGGGAACTGGAAGGAAGCCCGTAAAGGGTGCAAAACCGTT
CACATCGGTCGAAGACCGTGAAGTGTTTTCACGAAAAGCTAACAGGGCGG
CAAACTCGCCCCAAGATCGAAACATTAAAATAGGAAACGTGGAGAAAGGA
CTAGAAGAAGATAGTCTCAAAGCATCCGACAGCGACAGCGGAGTACGAAG
TCTGAATGAAAACATGAACTCGGTTTCCACGTCCTATGAGCTTATGAGAG
AAGAATTCGGCGAAGGCTTCCATGATCTTGGTCAAAGACCTCCGACATAT
GACTCTAATCACAAGAAAATCGATGAAAGCCCGCCGACGGTTCTTCAAGA
GCGTCCGAAGCGTCCTAACCGCCCGGAAAATACTAATCCGAACACTACCA
CGGCAGCGTCTGTGTCTTCCAGTTTCAAAGTATCCAGTCCCGTGGAACAA
ATGAACCGCAACGCTGAAGACCCTTCCAAAGAAAAAGCTATTACCGCAGC
CTCCTACGACCTCATGAGAGAAGAATTTGGAGCAGGGTTTCGCGATGTTG
GCCAGAGCTCGACTTCAGATGATACCGGGAAGCGGGAAAATGCCGAGAGT
CCACCTCCAGTTCTTCAAGATCGGCCTAAGCGACCAGTGCACAAAGAAAA
GACATATGTGGATAATGATATCAAATCGGCAACAGCTGATGACATCAATA
GCTTAAATACTAGTAGCCCTCCACCGAAGTTAAATGTCCCTCCCCAAAGG
TATTTCCCCGTAATAGAGAAAGACGAGGCCGGTGTACCGCTGCAGAGTGT
TTCATCATTGGATGACATACGAAGTGGGTCTGTTCTGCCGCTAAGAAAAG
GAGCAAAGTCTTCTCCTGAGGAAAACAATATTGATCCGAACTCACATCCG
ACTGAAAGCTCACGCAATGCAACACAAGGGATCACAGGGGAAGATATTGT
TCCCAAGAATGTGGAGAACATTGAAAGTGGTATCGACTTGTCTGGCAGAG
ATTACGAGGTGAGACATTCAACCCCATCTGCTTTAGAGAATGATGAGGTG
CTAAGCACATCGGAAGGTCTCGACATGAACTCTAGAGCAGGCGAGAAAAT
GCCTCGGCTATCAGAACAGGGGCGCCCAGAGCGAAGCAAAGGCAACAACT
CGCGCACGAACCGGAGATTCAGAGGACCTCAACGCCTAAATTCAGAGGGA
ACGGAGTGGCGACCCAATGTCGAGGCCTATGTACTAGGACATCCGAAGTT
CGTCTGTAGGCAAATTACTCCGAGCGCATAA

Coding sequence (CDS) from alignment at tig00000005_pilon:1228525..1230255-

>Ggra2683.t1 ID=Ggra2683.t1|Name=Ggra2683.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000005_pilon:1228525..1230255- (Gracilaria gracilis GNS1m male)
ATGATGTTGCTGACGTTTGTTACATCCCCGACTTTTGTTACGAAGAACTT
TGTACCTTCCGGTCGCTGCCGGGTTCATCTTGTTAACCACGCCAAAAGGA
AAATCATTATCGTTTCCGACGCCAGAAGCAACAATGGCAAGGTTCATTCG
GACCGGATGCAGCAAATGAACTCAAGAAGCTCCAGTAAACAAGCAGATGA
TTCCATGTCATCAGATATCAGAAATAACGCGGAAAGAAAGGCACAGTATG
ATTTCTTCAGCGAACAACTTGGAATGGCAATTGACAGCAATCTGAAGCAG
ACCAAACATGATCGTCTGCTGGGCGATGCTCCTTCCACGAATTCAAACAT
ACCATCGAATGAAGCCCTTGGGCAGAATACAACGGAAGCAGGGGAAAGAG
AACGTGTCGAAGTTAACCCTGCAGATTATGATCTCTTTGATCAGCTTCTT
CAAAACACAGGGGGAACTGGAAGGAAGCCCGTAAAGGGTGCAAAACCGTT
CACATCGGTCGAAGACCGTGAAGTGTTTTCACGAAAAGCTAACAGGGCGG
CAAACTCGCCCCAAGATCGAAACATTAAAATAGGAAACGTGGAGAAAGGA
CTAGAAGAAGATAGTCTCAAAGCATCCGACAGCGACAGCGGAGTACGAAG
TCTGAATGAAAACATGAACTCGGTTTCCACGTCCTATGAGCTTATGAGAG
AAGAATTCGGCGAAGGCTTCCATGATCTTGGTCAAAGACCTCCGACATAT
GACTCTAATCACAAGAAAATCGATGAAAGCCCGCCGACGGTTCTTCAAGA
GCGTCCGAAGCGTCCTAACCGCCCGGAAAATACTAATCCGAACACTACCA
CGGCAGCGTCTGTGTCTTCCAGTTTCAAAGTATCCAGTCCCGTGGAACAA
ATGAACCGCAACGCTGAAGACCCTTCCAAAGAAAAAGCTATTACCGCAGC
CTCCTACGACCTCATGAGAGAAGAATTTGGAGCAGGGTTTCGCGATGTTG
GCCAGAGCTCGACTTCAGATGATACCGGGAAGCGGGAAAATGCCGAGAGT
CCACCTCCAGTTCTTCAAGATCGGCCTAAGCGACCAGTGCACAAAGAAAA
GACATATGTGGATAATGATATCAAATCGGCAACAGCTGATGACATCAATA
GCTTAAATACTAGTAGCCCTCCACCGAAGTTAAATGTCCCTCCCCAAAGG
TATTTCCCCGTAATAGAGAAAGACGAGGCCGGTGTACCGCTGCAGAGTGT
TTCATCATTGGATGACATACGAAGTGGGTCTGTTCTGCCGCTAAGAAAAG
GAGCAAAGTCTTCTCCTGAGGAAAACAATATTGATCCGAACTCACATCCG
ACTGAAAGCTCACGCAATGCAACACAAGGGATCACAGGGGAAGATATTGT
TCCCAAGAATGTGGAGAACATTGAAAGTGGTATCGACTTGTCTGGCAGAG
ATTACGAGGTGAGACATTCAACCCCATCTGCTTTAGAGAATGATGAGGTG
CTAAGCACATCGGAAGGTCTCGACATGAACTCTAGAGCAGGCGAGAAAAT
GCCTCGGCTATCAGAACAGGGGCGCCCAGAGCGAAGCAAAGGCAACAACT
CGCGCACGAACCGGAGATTCAGAGGACCTCAACGCCTAAATTCAGAGGGA
ACGGAGTGGCGACCCAATGTCGAGGCCTATGTACTAGGACATCCGAAGTT
CGTCTGTAGGCAAATTACTCCGAGCGCATAA