Ggra2663.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2663.t1
Unique Name	Ggra2663.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	332

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:1165657..1166652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2663	Ggra2663	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 1165657..1166652 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2663.t1.start1	Ggra2663.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 1165657..1165659 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2663.t1.CDS1	Ggra2663.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 1165657..1166652 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2663.t1.exon1	Ggra2663.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 1165657..1166652 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2663.t1.stop1	Ggra2663.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 1166650..1166652 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2663.t1	Ggra2663.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 1165657..1166652 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:1165657..1166652+
coding sequence from alignment at tig00000005_pilon:1165657..1166652+

mRNA sequence

>Ggra2663.t1 ID=Ggra2663.t1|Name=Ggra2663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MAAGKSDVVRKRLMSAGLSPQICTRYVDILRSFLSARMTKIQYEHQMTKL
LPNDKIHVHNSIIQDILFRAQQKRDGLRDLPLLIPLKKPAPSNRQLSKLP
NGPHKKPAVTKIGIKRTHDDLDPNTVKGTPSDDTSLQNAKRQKIRAVQPK
KPPSDVDKPKLVKPKLDLPERRSPKPKRPKAAEKTPSLPPPSPCAPAAAR
TAASRAGLMVASTELSSYDMPFQPLEPGCGIDYELFIKLRHRMKRIAVEQ
AGMGEMHDDAVGAMTHAIEMRVKLLLQLAVRHRTARDALVPRENLQCGPV
RGCDLREPLKRNTGLLGEERAVDLERLSMLL*

spliced messenger RNA

>Ggra2663.t1 ID=Ggra2663.t1|Name=Ggra2663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000005_pilon:1165657..1166652+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCCGGCAAGTCAGATGTCGTTCGCAAGCGCCTCATGTCCGCCGG
TCTGTCACCCCAGATATGCACAAGATACGTCGATATTCTGCGCTCATTTC
TCAGCGCCCGCATGACTAAGATCCAATACGAGCATCAAATGACCAAACTT
CTACCAAACGACAAGATTCATGTACATAACTCCATCATCCAAGATATCTT
GTTCCGAGCACAACAGAAGCGCGATGGATTGCGAGATCTTCCACTCCTTA
TTCCTCTGAAAAAGCCTGCCCCATCCAATAGGCAGCTCTCCAAACTACCA
AACGGCCCGCACAAAAAGCCCGCTGTCACCAAGATTGGTATTAAGCGAAC
GCACGATGACCTTGACCCCAACACCGTCAAGGGCACACCAAGTGACGATA
CTAGCTTGCAAAATGCAAAACGTCAGAAGATTCGTGCTGTACAGCCAAAG
AAACCACCATCCGATGTGGACAAACCGAAGCTTGTCAAACCAAAACTGGA
CCTTCCGGAAAGGCGCTCGCCAAAGCCAAAGCGACCAAAAGCAGCGGAGA
AGACTCCAAGTCTTCCACCGCCTTCGCCATGTGCGCCAGCGGCTGCGCGT
ACCGCCGCGTCGAGGGCGGGTTTGATGGTAGCGTCCACCGAGCTGAGCTC
GTACGACATGCCGTTCCAGCCGCTTGAACCGGGCTGCGGCATTGATTACG
AGTTGTTCATCAAGCTGCGACACCGAATGAAAAGGATTGCGGTGGAACAA
GCCGGCATGGGAGAGATGCACGACGACGCTGTGGGTGCCATGACACACGC
GATTGAAATGCGCGTCAAGCTGCTGTTGCAGCTGGCGGTTCGACACCGCA
CAGCGAGGGACGCGTTGGTTCCACGCGAAAACTTGCAGTGCGGACCGGTG
CGAGGCTGTGACTTGAGGGAACCTTTGAAGAGAAATACAGGGCTGCTCGG
GGAGGAACGGGCGGTGGACTTGGAGCGGCTGTCGATGCTGCTGTGA

protein sequence of Ggra2663.t1

>Ggra2663.t1 ID=Ggra2663.t1|Name=Ggra2663.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MAAGKSDVVRKRLMSAGLSPQICTRYVDILRSFLSARMTKIQYEHQMTKL
LPNDKIHVHNSIIQDILFRAQQKRDGLRDLPLLIPLKKPAPSNRQLSKLP
NGPHKKPAVTKIGIKRTHDDLDPNTVKGTPSDDTSLQNAKRQKIRAVQPK
KPPSDVDKPKLVKPKLDLPERRSPKPKRPKAAEKTPSLPPPSPCAPAAAR
TAASRAGLMVASTELSSYDMPFQPLEPGCGIDYELFIKLRHRMKRIAVEQ
AGMGEMHDDAVGAMTHAIEMRVKLLLQLAVRHRTARDALVPRENLQCGPV
RGCDLREPLKRNTGLLGEERAVDLERLSMLL*

mRNA from alignment at tig00000005_pilon:1165657..1166652+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2663.t1 ID=Ggra2663.t1|Name=Ggra2663.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000005_pilon:1165657..1166652+ (Gracilaria gracilis GNS1m male)
ATGGCAGCCGGCAAGTCAGATGTCGTTCGCAAGCGCCTCATGTCCGCCGG
TCTGTCACCCCAGATATGCACAAGATACGTCGATATTCTGCGCTCATTTC
TCAGCGCCCGCATGACTAAGATCCAATACGAGCATCAAATGACCAAACTT
CTACCAAACGACAAGATTCATGTACATAACTCCATCATCCAAGATATCTT
GTTCCGAGCACAACAGAAGCGCGATGGATTGCGAGATCTTCCACTCCTTA
TTCCTCTGAAAAAGCCTGCCCCATCCAATAGGCAGCTCTCCAAACTACCA
AACGGCCCGCACAAAAAGCCCGCTGTCACCAAGATTGGTATTAAGCGAAC
GCACGATGACCTTGACCCCAACACCGTCAAGGGCACACCAAGTGACGATA
CTAGCTTGCAAAATGCAAAACGTCAGAAGATTCGTGCTGTACAGCCAAAG
AAACCACCATCCGATGTGGACAAACCGAAGCTTGTCAAACCAAAACTGGA
CCTTCCGGAAAGGCGCTCGCCAAAGCCAAAGCGACCAAAAGCAGCGGAGA
AGACTCCAAGTCTTCCACCGCCTTCGCCATGTGCGCCAGCGGCTGCGCGT
ACCGCCGCGTCGAGGGCGGGTTTGATGGTAGCGTCCACCGAGCTGAGCTC
GTACGACATGCCGTTCCAGCCGCTTGAACCGGGCTGCGGCATTGATTACG
AGTTGTTCATCAAGCTGCGACACCGAATGAAAAGGATTGCGGTGGAACAA
GCCGGCATGGGAGAGATGCACGACGACGCTGTGGGTGCCATGACACACGC
GATTGAAATGCGCGTCAAGCTGCTGTTGCAGCTGGCGGTTCGACACCGCA
CAGCGAGGGACGCGTTGGTTCCACGCGAAAACTTGCAGTGCGGACCGGTG
CGAGGCTGTGACTTGAGGGAACCTTTGAAGAGAAATACAGGGCTGCTCGG
GGAGGAACGGGCGGTGGACTTGGAGCGGCTGTCGATGCTGCTGTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:1165657..1166652+

>Ggra2663.t1 ID=Ggra2663.t1|Name=Ggra2663.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000005_pilon:1165657..1166652+ (Gracilaria gracilis GNS1m male)
ATGGCAGCCGGCAAGTCAGATGTCGTTCGCAAGCGCCTCATGTCCGCCGG
TCTGTCACCCCAGATATGCACAAGATACGTCGATATTCTGCGCTCATTTC
TCAGCGCCCGCATGACTAAGATCCAATACGAGCATCAAATGACCAAACTT
CTACCAAACGACAAGATTCATGTACATAACTCCATCATCCAAGATATCTT
GTTCCGAGCACAACAGAAGCGCGATGGATTGCGAGATCTTCCACTCCTTA
TTCCTCTGAAAAAGCCTGCCCCATCCAATAGGCAGCTCTCCAAACTACCA
AACGGCCCGCACAAAAAGCCCGCTGTCACCAAGATTGGTATTAAGCGAAC
GCACGATGACCTTGACCCCAACACCGTCAAGGGCACACCAAGTGACGATA
CTAGCTTGCAAAATGCAAAACGTCAGAAGATTCGTGCTGTACAGCCAAAG
AAACCACCATCCGATGTGGACAAACCGAAGCTTGTCAAACCAAAACTGGA
CCTTCCGGAAAGGCGCTCGCCAAAGCCAAAGCGACCAAAAGCAGCGGAGA
AGACTCCAAGTCTTCCACCGCCTTCGCCATGTGCGCCAGCGGCTGCGCGT
ACCGCCGCGTCGAGGGCGGGTTTGATGGTAGCGTCCACCGAGCTGAGCTC
GTACGACATGCCGTTCCAGCCGCTTGAACCGGGCTGCGGCATTGATTACG
AGTTGTTCATCAAGCTGCGACACCGAATGAAAAGGATTGCGGTGGAACAA
GCCGGCATGGGAGAGATGCACGACGACGCTGTGGGTGCCATGACACACGC
GATTGAAATGCGCGTCAAGCTGCTGTTGCAGCTGGCGGTTCGACACCGCA
CAGCGAGGGACGCGTTGGTTCCACGCGAAAACTTGCAGTGCGGACCGGTG
CGAGGCTGTGACTTGAGGGAACCTTTGAAGAGAAATACAGGGCTGCTCGG
GGAGGAACGGGCGGTGGACTTGGAGCGGCTGTCGATGCTGCTGTGA