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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2711.XP_006466186.1 |
| PFAMs | DDT,WAC_Acf1_DNA_bd,WHIM1,WSD |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K11655 |
| Evalue | 7.43e-07 |
| EggNOG OGs | COG5076@1|root,KOG1245@2759|Eukaryota,37MK0@33090|Viridiplantae,3G8TS@35493|Streptophyta |
| Description | DDT domain-containing protein |
| COG category | B |
| BRITE | ko00000,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2649.t1.start1 | Ggra2649.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000005_pilon 1034907..1034909 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2649.t1.stop1 | Ggra2649.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000005_pilon 1037571..1037573 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2649.t1 ID=Ggra2649.t1|Name=Ggra2649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=889bp MDLRTILNDEQRAAPSPPPPPPPPPLLPPPPPPPPPPPALAPPQLLYAAP VFGVQPIVPVDVVLHHAWPPPTAPSFAAPGFIAARAAPPPQCGAPLIHAP PPAAHAHDARGVRRRAARKRARPSKRARPPPPSARLSASMQPSQHALRAS AMRRAPSPVAAHARALKPRTSSTSCSRKHDAVVTNARGAQNSPAQMARAP RCETATLQRRALRRHAFHSPPLSPSESPALSSRSRSRSRSRSRSRSPSLS RSSFSSPSEPLLALPRLPPSASTLLSPPQPSSAAAPPVSPRASPHASVDS PRKLASHSAMSTDEYSVEEHIIDGVDSFGRCLRPAYSSTDDDDDDSDVLI INTNHSGQTSPCQPSVSRPARSPSPSPSPGRRSPSPPRRSSLHSLSIEDP HDPYPVVSRHFDGVPSTAIGDMLQVWDFITSFSKSLRLTPFKLWHFQQAI VHNSRCELIDACLLRLVQIIISDKALINELDIPDAVVRPLATTTPRNAVD TILSELPNILLFESDDDDDHLLHITVQRLRQASRKEAFYKSIDPVGKCRV LRELVDYATMTDKLRHCVSTNLEHAEEERKRAREENSALRRKYESQLREL RTELFEYKLRHGMIEPPTGSTNDKKTSTDPNAEQKNCTTGTTSEIETDVV INQDSSNNRPTSKQSHSKNDSGSGSTSREGHTTRKEKLLQAQRERKEATE RRAIERGAQAIVARMDRIRANLKSLKNIRLRRRKGSDSFPITEAHSEQLL HNGGPQNSVRTYPLGTDRSGRCYWFFFGSGRIWIEDTKDADWFSLTSMKS VHSLLRWLSPHRLEERLLKKRVRQRLRLIEEEMVKEQKCFELAEREATKE RDITPRTTRAGKRRANQEAKTKKNKTVTTFLEYQNLES* back to topspliced messenger RNA >Ggra2649.t1 ID=Ggra2649.t1|Name=Ggra2649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2667bp|location=Sequence derived from alignment at tig00000005_pilon:1034907..1037573+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACCTACGCACAATCCTCAACGACGAGCAACGTGCGGCGCCATCTcc gccgccgccgccgccgccgccgccgctgctgccgccaccgccaccgccac cgccaccgccACCGGCGCTAGCGCCGCCGCAATTGCTGTACGCCGCGCCA GTGTTCGGCGTGCAGCCCATCGTCCCCGTGGACGTCGTGCTGCATCACGC ATGGCCACCGCCCACCGCGCCGTCGTTCGCCGCGCCGGGCTTCATCGCTG CGCGCGCTGCGCCGCCGCCGCAGTGCGGCGCGCCGCTGATACACGCGCCG CCGCCCGCGGCGCACGCGCACGACGCGCGAGGCGTCCGTCGTCGCGCCGC GCGCAAGCGCGCGCGCCCCTCCAAAAGGGCGCGCCCGCCGCCGCCTTCCG CGCGCCTCAGTGCGTCAATGCAGCCGAGCCAACACGCACTGCGTGCCAGC GCCATGAGGCGCGCGCCGTCGCCAGTTGCCGCGCACGCGCGCGCGCTCAA ACCGCGAACGAGCTCCACGTCATGCAGCCGCAAGCACGACGCCGTGGTGA CAAACGCACGCGGCGCGCAAAATTCGCCCGCCCAAATGGCGCGCGCGCCG CGCTGCGAGACGGCGACGCTGCAACGCCGCGCACTGCGCCGCCACGCTTT CCATTCGCCGCCGCTATCGCCGAGTGAGTCGCCcgcgctctcgtcgcgct cgcgctcgcgctcgcgctcgcgctcgcgttcgcgttcgccgtcgctgtcg cgctcgTCCTTTTCGTCGCCGTCCGAGCCTCTTTTGGcgctgccgcgcct gccgccttccgcctccacgttgctgtcgccgccgcagccgtcctccgccg ctgcgccgcctgTTTCGCCGCGCGCTTCGCCACATGCCAGCGTCGACTCG CCGCGTAAGCTCGCTTCGCACTCCGCCATGTCTACTGACGAGTACTCCGT TGAGGAGCACATTATCGATGGCGTCGACTCCTTTGGTCGATGTCTTCGCC CCGCTTACTCTTCCACAGACGATGACGACGATGATAGCGATGTGTTGATC ATCAACACCAACCACTCCGGCCAAACCTCCCCGTGTCAACCGTCTGTCAG TCGCCCTGCTCGCAGCCCTAGTCCTAGCCCCAGTCCTGGTCGCCGCTCCC CCTCCCCACCCCGCCGTTCTTCGTTACATTCGCTGTCCATTGAAGACCCA CACGATCCTTATCCGGTCGTATCAAGGCATTTTGACGGTGTGCCATCCAC CGCCATTGGCGATATGCTTCAGGTTTGGGATTTTATAACCTCCTTCTCAA AATCGCTACGTCTTACTCCCTTCAAGCTTTGGCACTTCCAACAAGCTATC GTTCACAACTCCCGCTGCGAGCTCATCGATGCTTGCCTTCTGCGTCTCGT CCAGATAATCATCTCCGACAAGGCCCTTATCAACGAACTGGACATTCCAG ACGCCGTCGTCAGACCGCTTGCCACAACCACACCAAGAAATGCTGTGGAT ACCATTCTCAGCGAACTGCCCAACATCCTACTCTTCGAGTCCGATGACGA CGATGATCATCTACTTCACATCACTGTACAAAGACTTCGCCAAGCATCTC GTAAGGAAGCCTTTTATAAATCCATAGACCCTGTCGGCAAGTGTCGCGTC CTGCGCGAACTTGTTGACTACGCCACCATGACCGATAAATTACGCCACTG CGTCTCCACCAATTTGGAGCACGCGGAAGAGGAGCGCAAGAGGGCCAGAG AGGAGAATTCCGCCCTGCGCCGAAAATATGAGAGTCAACTCCGAGAATTG CGAACCGAGCTTTTTGAGTACAAGCTCAGACATGGCATGATAGAGCCTCC TACCGGCTCTACGAACGACAAAAAGACTTCCACAGACCCCAACGCCGAGC AGAAGAACTGCACCACAGGAACCACCTCCGAGATCGAAACCGATGTCGTC ATCAATCAGGATTCCAGCAACAACCGTCCTACAAGCAAACAGTCGCACTC CAAGAATGATAGCGGCTCCGGCTCAACCAGTAGAGAGGGCCATACCACAA GAAAAGAGAAACTGTTACAGGCACAGCGCGAACGAAAGGAAGCCACTGAA CGGCGGGCTATAGAGCGCGGCGCACAGGCAATAGTGGCCCGTATGGATAG AATTCGAGCAAACCTCAAATCTCTCAAGAATATCCGCCTGCGCAGACGAA AGGGATCAGATAGCTTTCCCATCACCGAAGCACATAGCGAGCAACTGCTG CATAATGGCGGTCCGCAGAATTCGGTGCGGACGTATCCCCTCGGCACTGA TCGATCTGGTCGGTGTTACTGGTTCTTCTTTGGCTCTGGTCGCATATGGA TTGAAGATACAAAGGATGCGGACTGGTTTTCGTTGACAAGCATGAAAAGC GTGCACAGTCTGCTGAGATGGCTTTCTCCACATCGACTTGAAGAAAGATT ACTCAAGAAACGTGTACGTCAAAGGCTTCGTTTAATTGAAGAAGAAATGG TTAAGGAGCAAAAGTGTTTTGAGCTGGCTGAAAGGGAAGCCACGAAAGAG CGTGATATAACTCCGCGAACCACTAGAGCGGGAAAACGTCGAGCAAATCA GGAGGCTAAGACGAAGAAGAACAAGACTGTGACGACTTTCTTAGAGTATC AAAACTTGGAGAGCTAA back to topprotein sequence of Ggra2649.t1 >Ggra2649.t1 ID=Ggra2649.t1|Name=Ggra2649.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=889bp
MDLRTILNDEQRAAPSPPPPPPPPPLLPPPPPPPPPPPALAPPQLLYAAP VFGVQPIVPVDVVLHHAWPPPTAPSFAAPGFIAARAAPPPQCGAPLIHAP PPAAHAHDARGVRRRAARKRARPSKRARPPPPSARLSASMQPSQHALRAS AMRRAPSPVAAHARALKPRTSSTSCSRKHDAVVTNARGAQNSPAQMARAP RCETATLQRRALRRHAFHSPPLSPSESPALSSRSRSRSRSRSRSRSPSLS RSSFSSPSEPLLALPRLPPSASTLLSPPQPSSAAAPPVSPRASPHASVDS PRKLASHSAMSTDEYSVEEHIIDGVDSFGRCLRPAYSSTDDDDDDSDVLI INTNHSGQTSPCQPSVSRPARSPSPSPSPGRRSPSPPRRSSLHSLSIEDP HDPYPVVSRHFDGVPSTAIGDMLQVWDFITSFSKSLRLTPFKLWHFQQAI VHNSRCELIDACLLRLVQIIISDKALINELDIPDAVVRPLATTTPRNAVD TILSELPNILLFESDDDDDHLLHITVQRLRQASRKEAFYKSIDPVGKCRV LRELVDYATMTDKLRHCVSTNLEHAEEERKRAREENSALRRKYESQLREL RTELFEYKLRHGMIEPPTGSTNDKKTSTDPNAEQKNCTTGTTSEIETDVV INQDSSNNRPTSKQSHSKNDSGSGSTSREGHTTRKEKLLQAQRERKEATE RRAIERGAQAIVARMDRIRANLKSLKNIRLRRRKGSDSFPITEAHSEQLL HNGGPQNSVRTYPLGTDRSGRCYWFFFGSGRIWIEDTKDADWFSLTSMKS VHSLLRWLSPHRLEERLLKKRVRQRLRLIEEEMVKEQKCFELAEREATKE RDITPRTTRAGKRRANQEAKTKKNKTVTTFLEYQNLES* back to topmRNA from alignment at tig00000005_pilon:1034907..1037573+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2649.t1 ID=Ggra2649.t1|Name=Ggra2649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2667bp|location=Sequence derived from alignment at tig00000005_pilon:1034907..1037573+ (Gracilaria gracilis GNS1m male) ATGGACCTACGCACAATCCTCAACGACGAGCAACGTGCGGCGCCATCTcc
gccgccgccgccgccgccgccgccgctgctgccgccaccgccaccgccac
cgccaccgccACCGGCGCTAGCGCCGCCGCAATTGCTGTACGCCGCGCCA
GTGTTCGGCGTGCAGCCCATCGTCCCCGTGGACGTCGTGCTGCATCACGC
ATGGCCACCGCCCACCGCGCCGTCGTTCGCCGCGCCGGGCTTCATCGCTG
CGCGCGCTGCGCCGCCGCCGCAGTGCGGCGCGCCGCTGATACACGCGCCG
CCGCCCGCGGCGCACGCGCACGACGCGCGAGGCGTCCGTCGTCGCGCCGC
GCGCAAGCGCGCGCGCCCCTCCAAAAGGGCGCGCCCGCCGCCGCCTTCCG
CGCGCCTCAGTGCGTCAATGCAGCCGAGCCAACACGCACTGCGTGCCAGC
GCCATGAGGCGCGCGCCGTCGCCAGTTGCCGCGCACGCGCGCGCGCTCAA
ACCGCGAACGAGCTCCACGTCATGCAGCCGCAAGCACGACGCCGTGGTGA
CAAACGCACGCGGCGCGCAAAATTCGCCCGCCCAAATGGCGCGCGCGCCG
CGCTGCGAGACGGCGACGCTGCAACGCCGCGCACTGCGCCGCCACGCTTT
CCATTCGCCGCCGCTATCGCCGAGTGAGTCGCCcgcgctctcgtcgcgct
cgcgctcgcgctcgcgctcgcgctcgcgttcgcgttcgccgtcgctgtcg
cgctcgTCCTTTTCGTCGCCGTCCGAGCCTCTTTTGGcgctgccgcgcct
gccgccttccgcctccacgttgctgtcgccgccgcagccgtcctccgccg
ctgcgccgcctgTTTCGCCGCGCGCTTCGCCACATGCCAGCGTCGACTCG
CCGCGTAAGCTCGCTTCGCACTCCGCCATGTCTACTGACGAGTACTCCGT
TGAGGAGCACATTATCGATGGCGTCGACTCCTTTGGTCGATGTCTTCGCC
CCGCTTACTCTTCCACAGACGATGACGACGATGATAGCGATGTGTTGATC
ATCAACACCAACCACTCCGGCCAAACCTCCCCGTGTCAACCGTCTGTCAG
TCGCCCTGCTCGCAGCCCTAGTCCTAGCCCCAGTCCTGGTCGCCGCTCCC
CCTCCCCACCCCGCCGTTCTTCGTTACATTCGCTGTCCATTGAAGACCCA
CACGATCCTTATCCGGTCGTATCAAGGCATTTTGACGGTGTGCCATCCAC
CGCCATTGGCGATATGCTTCAGGTTTGGGATTTTATAACCTCCTTCTCAA
AATCGCTACGTCTTACTCCCTTCAAGCTTTGGCACTTCCAACAAGCTATC
GTTCACAACTCCCGCTGCGAGCTCATCGATGCTTGCCTTCTGCGTCTCGT
CCAGATAATCATCTCCGACAAGGCCCTTATCAACGAACTGGACATTCCAG
ACGCCGTCGTCAGACCGCTTGCCACAACCACACCAAGAAATGCTGTGGAT
ACCATTCTCAGCGAACTGCCCAACATCCTACTCTTCGAGTCCGATGACGA
CGATGATCATCTACTTCACATCACTGTACAAAGACTTCGCCAAGCATCTC
GTAAGGAAGCCTTTTATAAATCCATAGACCCTGTCGGCAAGTGTCGCGTC
CTGCGCGAACTTGTTGACTACGCCACCATGACCGATAAATTACGCCACTG
CGTCTCCACCAATTTGGAGCACGCGGAAGAGGAGCGCAAGAGGGCCAGAG
AGGAGAATTCCGCCCTGCGCCGAAAATATGAGAGTCAACTCCGAGAATTG
CGAACCGAGCTTTTTGAGTACAAGCTCAGACATGGCATGATAGAGCCTCC
TACCGGCTCTACGAACGACAAAAAGACTTCCACAGACCCCAACGCCGAGC
AGAAGAACTGCACCACAGGAACCACCTCCGAGATCGAAACCGATGTCGTC
ATCAATCAGGATTCCAGCAACAACCGTCCTACAAGCAAACAGTCGCACTC
CAAGAATGATAGCGGCTCCGGCTCAACCAGTAGAGAGGGCCATACCACAA
GAAAAGAGAAACTGTTACAGGCACAGCGCGAACGAAAGGAAGCCACTGAA
CGGCGGGCTATAGAGCGCGGCGCACAGGCAATAGTGGCCCGTATGGATAG
AATTCGAGCAAACCTCAAATCTCTCAAGAATATCCGCCTGCGCAGACGAA
AGGGATCAGATAGCTTTCCCATCACCGAAGCACATAGCGAGCAACTGCTG
CATAATGGCGGTCCGCAGAATTCGGTGCGGACGTATCCCCTCGGCACTGA
TCGATCTGGTCGGTGTTACTGGTTCTTCTTTGGCTCTGGTCGCATATGGA
TTGAAGATACAAAGGATGCGGACTGGTTTTCGTTGACAAGCATGAAAAGC
GTGCACAGTCTGCTGAGATGGCTTTCTCCACATCGACTTGAAGAAAGATT
ACTCAAGAAACGTGTACGTCAAAGGCTTCGTTTAATTGAAGAAGAAATGG
TTAAGGAGCAAAAGTGTTTTGAGCTGGCTGAAAGGGAAGCCACGAAAGAG
CGTGATATAACTCCGCGAACCACTAGAGCGGGAAAACGTCGAGCAAATCA
GGAGGCTAAGACGAAGAAGAACAAGACTGTGACGACTTTCTTAGAGTATC
AAAACTTGGAGAGCTAA back to topCoding sequence (CDS) from alignment at tig00000005_pilon:1034907..1037573+ >Ggra2649.t1 ID=Ggra2649.t1|Name=Ggra2649.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2667bp|location=Sequence derived from alignment at tig00000005_pilon:1034907..1037573+ (Gracilaria gracilis GNS1m male) ATGGACCTACGCACAATCCTCAACGACGAGCAACGTGCGGCGCCATCTcc gccgccgccgccgccgccgccgccgctgctgccgccaccgccaccgccac cgccaccgccACCGGCGCTAGCGCCGCCGCAATTGCTGTACGCCGCGCCA GTGTTCGGCGTGCAGCCCATCGTCCCCGTGGACGTCGTGCTGCATCACGC ATGGCCACCGCCCACCGCGCCGTCGTTCGCCGCGCCGGGCTTCATCGCTG CGCGCGCTGCGCCGCCGCCGCAGTGCGGCGCGCCGCTGATACACGCGCCG CCGCCCGCGGCGCACGCGCACGACGCGCGAGGCGTCCGTCGTCGCGCCGC GCGCAAGCGCGCGCGCCCCTCCAAAAGGGCGCGCCCGCCGCCGCCTTCCG CGCGCCTCAGTGCGTCAATGCAGCCGAGCCAACACGCACTGCGTGCCAGC GCCATGAGGCGCGCGCCGTCGCCAGTTGCCGCGCACGCGCGCGCGCTCAA ACCGCGAACGAGCTCCACGTCATGCAGCCGCAAGCACGACGCCGTGGTGA CAAACGCACGCGGCGCGCAAAATTCGCCCGCCCAAATGGCGCGCGCGCCG CGCTGCGAGACGGCGACGCTGCAACGCCGCGCACTGCGCCGCCACGCTTT CCATTCGCCGCCGCTATCGCCGAGTGAGTCGCCcgcgctctcgtcgcgct cgcgctcgcgctcgcgctcgcgctcgcgttcgcgttcgccgtcgctgtcg cgctcgTCCTTTTCGTCGCCGTCCGAGCCTCTTTTGGcgctgccgcgcct gccgccttccgcctccacgttgctgtcgccgccgcagccgtcctccgccg ctgcgccgcctgTTTCGCCGCGCGCTTCGCCACATGCCAGCGTCGACTCG CCGCGTAAGCTCGCTTCGCACTCCGCCATGTCTACTGACGAGTACTCCGT TGAGGAGCACATTATCGATGGCGTCGACTCCTTTGGTCGATGTCTTCGCC CCGCTTACTCTTCCACAGACGATGACGACGATGATAGCGATGTGTTGATC ATCAACACCAACCACTCCGGCCAAACCTCCCCGTGTCAACCGTCTGTCAG TCGCCCTGCTCGCAGCCCTAGTCCTAGCCCCAGTCCTGGTCGCCGCTCCC CCTCCCCACCCCGCCGTTCTTCGTTACATTCGCTGTCCATTGAAGACCCA CACGATCCTTATCCGGTCGTATCAAGGCATTTTGACGGTGTGCCATCCAC CGCCATTGGCGATATGCTTCAGGTTTGGGATTTTATAACCTCCTTCTCAA AATCGCTACGTCTTACTCCCTTCAAGCTTTGGCACTTCCAACAAGCTATC GTTCACAACTCCCGCTGCGAGCTCATCGATGCTTGCCTTCTGCGTCTCGT CCAGATAATCATCTCCGACAAGGCCCTTATCAACGAACTGGACATTCCAG ACGCCGTCGTCAGACCGCTTGCCACAACCACACCAAGAAATGCTGTGGAT ACCATTCTCAGCGAACTGCCCAACATCCTACTCTTCGAGTCCGATGACGA CGATGATCATCTACTTCACATCACTGTACAAAGACTTCGCCAAGCATCTC GTAAGGAAGCCTTTTATAAATCCATAGACCCTGTCGGCAAGTGTCGCGTC CTGCGCGAACTTGTTGACTACGCCACCATGACCGATAAATTACGCCACTG CGTCTCCACCAATTTGGAGCACGCGGAAGAGGAGCGCAAGAGGGCCAGAG AGGAGAATTCCGCCCTGCGCCGAAAATATGAGAGTCAACTCCGAGAATTG CGAACCGAGCTTTTTGAGTACAAGCTCAGACATGGCATGATAGAGCCTCC TACCGGCTCTACGAACGACAAAAAGACTTCCACAGACCCCAACGCCGAGC AGAAGAACTGCACCACAGGAACCACCTCCGAGATCGAAACCGATGTCGTC ATCAATCAGGATTCCAGCAACAACCGTCCTACAAGCAAACAGTCGCACTC CAAGAATGATAGCGGCTCCGGCTCAACCAGTAGAGAGGGCCATACCACAA GAAAAGAGAAACTGTTACAGGCACAGCGCGAACGAAAGGAAGCCACTGAA CGGCGGGCTATAGAGCGCGGCGCACAGGCAATAGTGGCCCGTATGGATAG AATTCGAGCAAACCTCAAATCTCTCAAGAATATCCGCCTGCGCAGACGAA AGGGATCAGATAGCTTTCCCATCACCGAAGCACATAGCGAGCAACTGCTG CATAATGGCGGTCCGCAGAATTCGGTGCGGACGTATCCCCTCGGCACTGA TCGATCTGGTCGGTGTTACTGGTTCTTCTTTGGCTCTGGTCGCATATGGA TTGAAGATACAAAGGATGCGGACTGGTTTTCGTTGACAAGCATGAAAAGC GTGCACAGTCTGCTGAGATGGCTTTCTCCACATCGACTTGAAGAAAGATT ACTCAAGAAACGTGTACGTCAAAGGCTTCGTTTAATTGAAGAAGAAATGG TTAAGGAGCAAAAGTGTTTTGAGCTGGCTGAAAGGGAAGCCACGAAAGAG CGTGATATAACTCCGCGAACCACTAGAGCGGGAAAACGTCGAGCAAATCA GGAGGCTAAGACGAAGAAGAACAAGACTGTGACGACTTTCTTAGAGTATC AAAACTTGGAGAGCTAA back to top
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