Ggra2643.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2643.t1
Unique NameGgra2643.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1017638..1018241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN15951
Max annot lvl35493|Streptophyta
Evalue0.000533
EggNOG OGs2C8JQ@1|root,2S01R@2759|Eukaryota,37UM8@33090|Viridiplantae,3GITR@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2643Ggra2643Gracilaria gracilis GNS1m malegenetig00000005_pilon 1017638..1018241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2643.t1Ggra2643.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1017638..1018241 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2643.t1.stop1Ggra2643.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1017638..1017640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2643.t1.CDS1Ggra2643.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1017638..1017949 -
Ggra2643.t1.CDS2Ggra2643.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1018026..1018121 -
Ggra2643.t1.CDS3Ggra2643.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1018203..1018241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2643.t1.exon1Ggra2643.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1017638..1017949 -
Ggra2643.t1.exon2Ggra2643.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 1018026..1018121 -
Ggra2643.t1.exon3Ggra2643.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 1018203..1018241 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2643.t1.intron1Ggra2643.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1017950..1018025 -
Ggra2643.t1.intron2Ggra2643.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 1018122..1018202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2643.t1.start1Ggra2643.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1018239..1018241 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2643.t1 ID=Ggra2643.t1|Name=Ggra2643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=149bp
MADEYDPENFSVRVSQSLIKVLTGQAAEPGPIEPRNAREASLVEALRKEG
RLHRISMLREMKESQSKQADEREQKAQEALTNSISSLDKKLNGLNFPSGS
SEAPKPCAAFRERITTCYKVNGRDNPLACAGEVEAFSECAKQLSRISN*
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spliced messenger RNA

>Ggra2643.t1 ID=Ggra2643.t1|Name=Ggra2643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00000005_pilon:1017638..1018241- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACGAATACGATCCTGAGAACTTTTCGGTGAGGGTTTCTCAAAG
CTTGATTAAGGTTTTGACAGGCCAAGCTGCCGAACCAGGACCCATTGAAC
CTAGGAATGCTAGGGAAGCATCATTAGTTGAGGCGCTTCGAAAAGAAGGT
CGCCTGCATCGAATTTCAATGCTCCGGGAGATGAAAGAGTCACAGTCGAA
ACAAGCGGACGAACGCGAGCAGAAGGCCCAGGAAGCTCTGACAAACAGCA
TCTCATCGTTGGATAAGAAGTTGAATGGTCTGAATTTTCCAAGCGGAAGT
TCTGAAGCGCCCAAGCCCTGCGCAGCTTTCCGGGAACGAATCACCACTTG
CTACAAAGTGAACGGGAGAGACAACCCGCTAGCGTGCGCCGGCGAGGTCG
AAGCTTTCTCAGAATGCGCAAAGCAATTGAGCAGGATTAGTAATTAG
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protein sequence of Ggra2643.t1

>Ggra2643.t1 ID=Ggra2643.t1|Name=Ggra2643.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=149bp
MADEYDPENFSVRVSQSLIKVLTGQAAEPGPIEPRNAREASLVEALRKEG
RLHRISMLREMKESQSKQADEREQKAQEALTNSISSLDKKLNGLNFPSGS
SEAPKPCAAFRERITTCYKVNGRDNPLACAGEVEAFSECAKQLSRISN*
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mRNA from alignment at tig00000005_pilon:1017638..1018241-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2643.t1 ID=Ggra2643.t1|Name=Ggra2643.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp|location=Sequence derived from alignment at tig00000005_pilon:1017638..1018241- (Gracilaria gracilis GNS1m male)
ATGGCTGACGAATACGATCCTGAGAACTTTTCGGTGAGGGTATGTACAAA
CATATCTACTTCTCCTTGATGTGCGTAATGCACTGTCTAACCTTTGAATA
CTTCTCTTACACATCCAAAGGTTTCTCAAAGCTTGATTAAGGTTTTGACA
GGCCAAGCTGCCGAACCAGGACCCATTGAACCTAGGAATGCTAGGGAAGC
ATCATTAGTTGAGGCGGTAAGTATTCCAACCGCAGTCCGGGGCGTTTCTG
TTTCGAAATGTCTTCATAGAAACTAACTTAGTTTGTGCTTAGCTTCGAAA
AGAAGGTCGCCTGCATCGAATTTCAATGCTCCGGGAGATGAAAGAGTCAC
AGTCGAAACAAGCGGACGAACGCGAGCAGAAGGCCCAGGAAGCTCTGACA
AACAGCATCTCATCGTTGGATAAGAAGTTGAATGGTCTGAATTTTCCAAG
CGGAAGTTCTGAAGCGCCCAAGCCCTGCGCAGCTTTCCGGGAACGAATCA
CCACTTGCTACAAAGTGAACGGGAGAGACAACCCGCTAGCGTGCGCCGGC
GAGGTCGAAGCTTTCTCAGAATGCGCAAAGCAATTGAGCAGGATTAGTAA
TTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1017638..1018241-

>Ggra2643.t1 ID=Ggra2643.t1|Name=Ggra2643.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00000005_pilon:1017638..1018241- (Gracilaria gracilis GNS1m male)
ATGGCTGACGAATACGATCCTGAGAACTTTTCGGTGAGGGTTTCTCAAAG
CTTGATTAAGGTTTTGACAGGCCAAGCTGCCGAACCAGGACCCATTGAAC
CTAGGAATGCTAGGGAAGCATCATTAGTTGAGGCGCTTCGAAAAGAAGGT
CGCCTGCATCGAATTTCAATGCTCCGGGAGATGAAAGAGTCACAGTCGAA
ACAAGCGGACGAACGCGAGCAGAAGGCCCAGGAAGCTCTGACAAACAGCA
TCTCATCGTTGGATAAGAAGTTGAATGGTCTGAATTTTCCAAGCGGAAGT
TCTGAAGCGCCCAAGCCCTGCGCAGCTTTCCGGGAACGAATCACCACTTG
CTACAAAGTGAACGGGAGAGACAACCCGCTAGCGTGCGCCGGCGAGGTCG
AAGCTTTCTCAGAATGCGCAAAGCAATTGAGCAGGATTAGTAATTAG
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