Ggra2642.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2642.t1
Unique Name	Ggra2642.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:1015921..1017561 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2642	Ggra2642	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 1015921..1017561 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2642.t1.start1	Ggra2642.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 1015921..1015923 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2642.t1.CDS1	Ggra2642.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 1015921..1017561 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2642.t1.exon1	Ggra2642.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 1015921..1017561 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2642.t1.stop1	Ggra2642.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 1017559..1017561 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2642.t1	Ggra2642.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 1015921..1017561 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:1015921..1017561+
coding sequence from alignment at tig00000005_pilon:1015921..1017561+

mRNA sequence

>Ggra2642.t1 ID=Ggra2642.t1|Name=Ggra2642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MTLLRGYAALSAAVDFVEPRSVAVATRFFRAYPRFSPFRRFSLSAAYRVA
LYKLVIPYAVLAAVFLLATLIAVFYFCHKAASVPGVDDSNESHPDNRDNT
AKLFLVFTSFLHFCIVLCVSLALANLFVIRYSVYDAKLAIQGVQRTIKYV
FQTPVKALVQFATRAEKVDVSSFSADETVSAVVNLFRSNTRNFRAALRSA
QVLVDNMNKIDRRITNLSSAFFWFSLVILLSVLLGLAVSLICDLSSSKSR
VTRLATFSFLAVPLLAAWSHSAVSTMLAVATADFCTSLHEYHQFIDIQEM
DSPEKSGKMAYDSMFDRYGLTCPSESPVTEQALQHVTTFFAASDGISDFT
QAFDAISDLPNAPRWNEAKRWMRSRIRTYKGCDEQLMFAGKLAFHMCDNS
PLSVVSGVSIVWLCSCAISLLFSVVIALLALGHPATEFISARELMYIYGA
PKLISILEDSSKILKTQSNFQPWWKSRNELGTDGSSITSDEASRKNSSTH
SSSDDDFPLPANPPGRSASYITQSDQRVTSNSPWQGSGYESPTTDV*

spliced messenger RNA

>Ggra2642.t1 ID=Ggra2642.t1|Name=Ggra2642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000005_pilon:1015921..1017561+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCCTGCGCGGTTATGCTGCTCTCTCTGCCGCGGTCGATTTCGT
GGAGCCGCGGTCGGTAGCCGTTGCCACTCGGTTTTTTCGAGCATATCCCA
GGTTCTCACCGTTTCGCCGCTTTTCACTCTCCGCCGCCTATCGCGTAGCG
TTATATAAGCTTGTTATTCCCTACGCCGTTCTCGCAGCCGTGTTTCTCCT
GGCCACTTTGATTGCCGTCTTCTACTTCTGTCACAAAGCCGCCAGCGTTC
CTGGCGTCGACGATTCCAACGAGTCTCACCCAGATAACAGGGATAACACG
GCGAAGCTGTTTCTAGTCTTTACCAGTTTTCTACACTTTTGCATCGTGCT
TTGTGTCTCCTTAGCGCTTGCGAACCTGTTTGTCATCCGTTATTCGGTTT
ACGATGCTAAGCTTGCGATACAAGGGGTGCAACGAACGATCAAATATGTG
TTTCAAACACCCGTCAAAGCTCTCGTACAGTTTGCAACCCGAGCCGAAAA
GGTAGACGTTTCGTCGTTTTCCGCAGACGAAACGGTTAGTGCCGTCGTCA
ACCTTTTTCGATCGAACACGCGTAACTTTCGAGCTGCCTTAAGATCGGCT
CAGGTGCTTGTCGACAACATGAATAAGATTGACCGTAGGATTACGAATCT
ATCGAGCGCCTTTTTCTGGTTCTCATTGGTTATCCTACTGTCCGTCTTGC
TTGGCCTTGCAGTCTCCTTGATATGTGACCTTTCTTCGTCGAAGAGCAGA
GTGACTCGTTTAGCAACCTTCTCATTTCTAGCCGTGCCATTACTTGCCGC
CTGGTCTCATTCTGCAGTTTCCACCATGCTCGCAGTCGCCACCGCAGATT
TCTGTACGTCGCTGCACGAATACCATCAGTTCATTGACATCCAGGAAATG
GATTCACCTGAAAAGTCTGGAAAAATGGCGTACGACAGTATGTTTGATCG
ATATGGTTTGACTTGCCCATCCGAGTCACCAGTAACAGAGCAGGCACTGC
AACATGTAACGACTTTCTTCGCTGCGAGCGACGGGATCTCTGATTTCACT
CAGGCATTCGATGCCATTTCGGATTTACCGAACGCTCCCCGATGGAACGA
GGCCAAGCGATGGATGCGAAGTAGAATTCGAACGTACAAAGGCTGTGACG
AGCAGCTTATGTTCGCCGGCAAACTGGCATTTCATATGTGCGACAATAGT
CCGCTGAGTGTTGTTTCTGGTGTATCAATAGTGTGGCTCTGTTCTTGTGC
CATCTCCTTGCTCTTTTCGGTTGTAATTGCCTTACTGGCTCTGGGGCATC
CCGCGACAGAGTTCATATCCGCACGAGAGCTCATGTATATTTATGGAGCA
CCAAAGCTGATTTCCATATTGGAAGACAGTTCGAAGATTTTGAAGACGCA
ATCTAATTTCCAGCCATGGTGGAAATCAAGGAACGAACTCGGCACAGACG
GGTCTTCAATAACGTCAGACGAAGCGAGCAGGAAGAATTCATCGACACAC
TCTTCGTCAGACGATGATTTCCCATTGCCCGCAAATCCGCCGGGAAGAAG
TGCGTCATACATAACGCAGTCTGATCAAAGGGTGACAAGTAATTCCCCAT
GGCAGGGGAGCGGTTACGAATCTCCCACTACTGACGTCTAG

protein sequence of Ggra2642.t1

>Ggra2642.t1 ID=Ggra2642.t1|Name=Ggra2642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MTLLRGYAALSAAVDFVEPRSVAVATRFFRAYPRFSPFRRFSLSAAYRVA
LYKLVIPYAVLAAVFLLATLIAVFYFCHKAASVPGVDDSNESHPDNRDNT
AKLFLVFTSFLHFCIVLCVSLALANLFVIRYSVYDAKLAIQGVQRTIKYV
FQTPVKALVQFATRAEKVDVSSFSADETVSAVVNLFRSNTRNFRAALRSA
QVLVDNMNKIDRRITNLSSAFFWFSLVILLSVLLGLAVSLICDLSSSKSR
VTRLATFSFLAVPLLAAWSHSAVSTMLAVATADFCTSLHEYHQFIDIQEM
DSPEKSGKMAYDSMFDRYGLTCPSESPVTEQALQHVTTFFAASDGISDFT
QAFDAISDLPNAPRWNEAKRWMRSRIRTYKGCDEQLMFAGKLAFHMCDNS
PLSVVSGVSIVWLCSCAISLLFSVVIALLALGHPATEFISARELMYIYGA
PKLISILEDSSKILKTQSNFQPWWKSRNELGTDGSSITSDEASRKNSSTH
SSSDDDFPLPANPPGRSASYITQSDQRVTSNSPWQGSGYESPTTDV*

mRNA from alignment at tig00000005_pilon:1015921..1017561+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2642.t1 ID=Ggra2642.t1|Name=Ggra2642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000005_pilon:1015921..1017561+ (Gracilaria gracilis GNS1m male)
ATGACGCTCCTGCGCGGTTATGCTGCTCTCTCTGCCGCGGTCGATTTCGT
GGAGCCGCGGTCGGTAGCCGTTGCCACTCGGTTTTTTCGAGCATATCCCA
GGTTCTCACCGTTTCGCCGCTTTTCACTCTCCGCCGCCTATCGCGTAGCG
TTATATAAGCTTGTTATTCCCTACGCCGTTCTCGCAGCCGTGTTTCTCCT
GGCCACTTTGATTGCCGTCTTCTACTTCTGTCACAAAGCCGCCAGCGTTC
CTGGCGTCGACGATTCCAACGAGTCTCACCCAGATAACAGGGATAACACG
GCGAAGCTGTTTCTAGTCTTTACCAGTTTTCTACACTTTTGCATCGTGCT
TTGTGTCTCCTTAGCGCTTGCGAACCTGTTTGTCATCCGTTATTCGGTTT
ACGATGCTAAGCTTGCGATACAAGGGGTGCAACGAACGATCAAATATGTG
TTTCAAACACCCGTCAAAGCTCTCGTACAGTTTGCAACCCGAGCCGAAAA
GGTAGACGTTTCGTCGTTTTCCGCAGACGAAACGGTTAGTGCCGTCGTCA
ACCTTTTTCGATCGAACACGCGTAACTTTCGAGCTGCCTTAAGATCGGCT
CAGGTGCTTGTCGACAACATGAATAAGATTGACCGTAGGATTACGAATCT
ATCGAGCGCCTTTTTCTGGTTCTCATTGGTTATCCTACTGTCCGTCTTGC
TTGGCCTTGCAGTCTCCTTGATATGTGACCTTTCTTCGTCGAAGAGCAGA
GTGACTCGTTTAGCAACCTTCTCATTTCTAGCCGTGCCATTACTTGCCGC
CTGGTCTCATTCTGCAGTTTCCACCATGCTCGCAGTCGCCACCGCAGATT
TCTGTACGTCGCTGCACGAATACCATCAGTTCATTGACATCCAGGAAATG
GATTCACCTGAAAAGTCTGGAAAAATGGCGTACGACAGTATGTTTGATCG
ATATGGTTTGACTTGCCCATCCGAGTCACCAGTAACAGAGCAGGCACTGC
AACATGTAACGACTTTCTTCGCTGCGAGCGACGGGATCTCTGATTTCACT
CAGGCATTCGATGCCATTTCGGATTTACCGAACGCTCCCCGATGGAACGA
GGCCAAGCGATGGATGCGAAGTAGAATTCGAACGTACAAAGGCTGTGACG
AGCAGCTTATGTTCGCCGGCAAACTGGCATTTCATATGTGCGACAATAGT
CCGCTGAGTGTTGTTTCTGGTGTATCAATAGTGTGGCTCTGTTCTTGTGC
CATCTCCTTGCTCTTTTCGGTTGTAATTGCCTTACTGGCTCTGGGGCATC
CCGCGACAGAGTTCATATCCGCACGAGAGCTCATGTATATTTATGGAGCA
CCAAAGCTGATTTCCATATTGGAAGACAGTTCGAAGATTTTGAAGACGCA
ATCTAATTTCCAGCCATGGTGGAAATCAAGGAACGAACTCGGCACAGACG
GGTCTTCAATAACGTCAGACGAAGCGAGCAGGAAGAATTCATCGACACAC
TCTTCGTCAGACGATGATTTCCCATTGCCCGCAAATCCGCCGGGAAGAAG
TGCGTCATACATAACGCAGTCTGATCAAAGGGTGACAAGTAATTCCCCAT
GGCAGGGGAGCGGTTACGAATCTCCCACTACTGACGTCTAG

Coding sequence (CDS) from alignment at tig00000005_pilon:1015921..1017561+

>Ggra2642.t1 ID=Ggra2642.t1|Name=Ggra2642.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000005_pilon:1015921..1017561+ (Gracilaria gracilis GNS1m male)
ATGACGCTCCTGCGCGGTTATGCTGCTCTCTCTGCCGCGGTCGATTTCGT
GGAGCCGCGGTCGGTAGCCGTTGCCACTCGGTTTTTTCGAGCATATCCCA
GGTTCTCACCGTTTCGCCGCTTTTCACTCTCCGCCGCCTATCGCGTAGCG
TTATATAAGCTTGTTATTCCCTACGCCGTTCTCGCAGCCGTGTTTCTCCT
GGCCACTTTGATTGCCGTCTTCTACTTCTGTCACAAAGCCGCCAGCGTTC
CTGGCGTCGACGATTCCAACGAGTCTCACCCAGATAACAGGGATAACACG
GCGAAGCTGTTTCTAGTCTTTACCAGTTTTCTACACTTTTGCATCGTGCT
TTGTGTCTCCTTAGCGCTTGCGAACCTGTTTGTCATCCGTTATTCGGTTT
ACGATGCTAAGCTTGCGATACAAGGGGTGCAACGAACGATCAAATATGTG
TTTCAAACACCCGTCAAAGCTCTCGTACAGTTTGCAACCCGAGCCGAAAA
GGTAGACGTTTCGTCGTTTTCCGCAGACGAAACGGTTAGTGCCGTCGTCA
ACCTTTTTCGATCGAACACGCGTAACTTTCGAGCTGCCTTAAGATCGGCT
CAGGTGCTTGTCGACAACATGAATAAGATTGACCGTAGGATTACGAATCT
ATCGAGCGCCTTTTTCTGGTTCTCATTGGTTATCCTACTGTCCGTCTTGC
TTGGCCTTGCAGTCTCCTTGATATGTGACCTTTCTTCGTCGAAGAGCAGA
GTGACTCGTTTAGCAACCTTCTCATTTCTAGCCGTGCCATTACTTGCCGC
CTGGTCTCATTCTGCAGTTTCCACCATGCTCGCAGTCGCCACCGCAGATT
TCTGTACGTCGCTGCACGAATACCATCAGTTCATTGACATCCAGGAAATG
GATTCACCTGAAAAGTCTGGAAAAATGGCGTACGACAGTATGTTTGATCG
ATATGGTTTGACTTGCCCATCCGAGTCACCAGTAACAGAGCAGGCACTGC
AACATGTAACGACTTTCTTCGCTGCGAGCGACGGGATCTCTGATTTCACT
CAGGCATTCGATGCCATTTCGGATTTACCGAACGCTCCCCGATGGAACGA
GGCCAAGCGATGGATGCGAAGTAGAATTCGAACGTACAAAGGCTGTGACG
AGCAGCTTATGTTCGCCGGCAAACTGGCATTTCATATGTGCGACAATAGT
CCGCTGAGTGTTGTTTCTGGTGTATCAATAGTGTGGCTCTGTTCTTGTGC
CATCTCCTTGCTCTTTTCGGTTGTAATTGCCTTACTGGCTCTGGGGCATC
CCGCGACAGAGTTCATATCCGCACGAGAGCTCATGTATATTTATGGAGCA
CCAAAGCTGATTTCCATATTGGAAGACAGTTCGAAGATTTTGAAGACGCA
ATCTAATTTCCAGCCATGGTGGAAATCAAGGAACGAACTCGGCACAGACG
GGTCTTCAATAACGTCAGACGAAGCGAGCAGGAAGAATTCATCGACACAC
TCTTCGTCAGACGATGATTTCCCATTGCCCGCAAATCCGCCGGGAAGAAG
TGCGTCATACATAACGCAGTCTGATCAAAGGGTGACAAGTAATTCCCCAT
GGCAGGGGAGCGGTTACGAATCTCCCACTACTGACGTCTAG