Ggra2628.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2628.t1
Unique NameGgra2628.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:986511..987383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_92061
Preferred nameANAPC10
PFAMsANAPC10
Max annot lvl2759|Eukaryota
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K03357,ko:K11788
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00230,map01100,map01110,map01130,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00048,M00389
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005739,GO:0005829,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007113,GO:0008150,GO:0008152,GO:0008156,GO:0008283,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010087,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0016043,GO:0016567,GO:0016604,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031145,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0036211,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045786,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070979,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090329,GO:0098772,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234,GO:2000104,GO:2000112,GO:2000113,GO:2000736
Evalue4.46e-38
EggNOG OGsCOG5156@1|root,KOG3437@2759|Eukaryota
EC6.3.3.1,6.3.4.13
Descriptionanaphase-promoting complex-dependent catabolic process
COG categoryDO
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2628Ggra2628Gracilaria gracilis GNS1m malegenetig00000005_pilon 986511..987383 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2628.t1.start1Ggra2628.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 986511..986513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2628.t1.CDS1Ggra2628.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 986511..987383 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2628.t1.exon1Ggra2628.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 986511..987383 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2628.t1.stop1Ggra2628.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 987381..987383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2628.t1Ggra2628.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 986511..987383 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2628.t1 ID=Ggra2628.t1|Name=Ggra2628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MYHSVPHAQDEWFADSQQTIRALESLELHLRNLHTPVNASHPKHTSNQGY
EDGDIDEGLRDLTNQAVWTVSTAKPGNGVEQLLDGDPNTYWQSDGLQPHS
ITAHFSSKVKISEIHLYLNYDADESYTPAFISIMAGSNFQDLQKVKESRK
IRMPKGWIVIPMGDQTDVDDECSDDESDVEREDMGQPERERIRQRRAERH
RRRTKRLIDRQAKLDEKQRKAEQDINGEFEVMKDRSVTKAHMIQIFIISN
HLNGRDSHIRMVRVLGPKSQLSSRTSRFTSPEFRMYETIR*
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spliced messenger RNA

>Ggra2628.t1 ID=Ggra2628.t1|Name=Ggra2628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000005_pilon:986511..987383+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCACTCTGTTCCTCATGCCCAGGACGAATGGTTTGCAGACAGTCA
GCAAACCATCCGGGCACTTGAAAGCCTAGAACTTCACCTTCGAAATTTGC
ATACTCCGGTAAATGCAAGTCACCCGAAACACACGTCAAACCAAGGATAT
GAAGATGGTGACATAGACGAGGGATTGCGAGATTTGACTAACCAGGCCGT
TTGGACGGTGAGTACAGCGAAACCGGGCAATGGAGTAGAGCAACTTCTGG
ATGGGGATCCAAACACCTATTGGCAATCAGACGGCCTTCAACCTCATTCA
ATTACAGCCCATTTCTCGTCCAAAGTCAAGATTTCGGAAATTCATCTATA
TCTTAACTACGACGCGGACGAAAGTTACACACCGGCCTTTATATCCATCA
TGGCAGGATCAAACTTTCAGGACCTGCAAAAGGTCAAGGAGTCACGAAAG
ATTCGGATGCCAAAAGGATGGATAGTTATTCCAATGGGCGATCAAACCGA
TGTGGACGACGAATGTAGCGACGATGAAAGCGACGTTGAACGTGAGGATA
TGGGTCAGCCGGAACGAGAGCGCATCCGACAAAGACGCGCCGAACGTCAT
AGACGAAGGACGAAAAGGCTGATAGATAGACAAGCCAAGCTTGACGAGAA
GCAAAGGAAAGCAGAACAGGACATAAATGGGGAATTCGAGGTCATGAAGG
ATCGATCTGTGACGAAGGCGCATATGATTCAGATCTTTATAATTTCCAAT
CATCTCAACGGAAGGGATTCCCACATCAGAATGGTCAGAGTCTTGGGACC
AAAAAGTCAGCTATCTAGCAGAACGTCCCGTTTTACATCACCAGAATTTC
GAATGTACGAAACGATACGGTAA
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protein sequence of Ggra2628.t1

>Ggra2628.t1 ID=Ggra2628.t1|Name=Ggra2628.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MYHSVPHAQDEWFADSQQTIRALESLELHLRNLHTPVNASHPKHTSNQGY
EDGDIDEGLRDLTNQAVWTVSTAKPGNGVEQLLDGDPNTYWQSDGLQPHS
ITAHFSSKVKISEIHLYLNYDADESYTPAFISIMAGSNFQDLQKVKESRK
IRMPKGWIVIPMGDQTDVDDECSDDESDVEREDMGQPERERIRQRRAERH
RRRTKRLIDRQAKLDEKQRKAEQDINGEFEVMKDRSVTKAHMIQIFIISN
HLNGRDSHIRMVRVLGPKSQLSSRTSRFTSPEFRMYETIR*
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mRNA from alignment at tig00000005_pilon:986511..987383+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2628.t1 ID=Ggra2628.t1|Name=Ggra2628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000005_pilon:986511..987383+ (Gracilaria gracilis GNS1m male)
ATGTACCACTCTGTTCCTCATGCCCAGGACGAATGGTTTGCAGACAGTCA
GCAAACCATCCGGGCACTTGAAAGCCTAGAACTTCACCTTCGAAATTTGC
ATACTCCGGTAAATGCAAGTCACCCGAAACACACGTCAAACCAAGGATAT
GAAGATGGTGACATAGACGAGGGATTGCGAGATTTGACTAACCAGGCCGT
TTGGACGGTGAGTACAGCGAAACCGGGCAATGGAGTAGAGCAACTTCTGG
ATGGGGATCCAAACACCTATTGGCAATCAGACGGCCTTCAACCTCATTCA
ATTACAGCCCATTTCTCGTCCAAAGTCAAGATTTCGGAAATTCATCTATA
TCTTAACTACGACGCGGACGAAAGTTACACACCGGCCTTTATATCCATCA
TGGCAGGATCAAACTTTCAGGACCTGCAAAAGGTCAAGGAGTCACGAAAG
ATTCGGATGCCAAAAGGATGGATAGTTATTCCAATGGGCGATCAAACCGA
TGTGGACGACGAATGTAGCGACGATGAAAGCGACGTTGAACGTGAGGATA
TGGGTCAGCCGGAACGAGAGCGCATCCGACAAAGACGCGCCGAACGTCAT
AGACGAAGGACGAAAAGGCTGATAGATAGACAAGCCAAGCTTGACGAGAA
GCAAAGGAAAGCAGAACAGGACATAAATGGGGAATTCGAGGTCATGAAGG
ATCGATCTGTGACGAAGGCGCATATGATTCAGATCTTTATAATTTCCAAT
CATCTCAACGGAAGGGATTCCCACATCAGAATGGTCAGAGTCTTGGGACC
AAAAAGTCAGCTATCTAGCAGAACGTCCCGTTTTACATCACCAGAATTTC
GAATGTACGAAACGATACGGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:986511..987383+

>Ggra2628.t1 ID=Ggra2628.t1|Name=Ggra2628.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000005_pilon:986511..987383+ (Gracilaria gracilis GNS1m male)
ATGTACCACTCTGTTCCTCATGCCCAGGACGAATGGTTTGCAGACAGTCA
GCAAACCATCCGGGCACTTGAAAGCCTAGAACTTCACCTTCGAAATTTGC
ATACTCCGGTAAATGCAAGTCACCCGAAACACACGTCAAACCAAGGATAT
GAAGATGGTGACATAGACGAGGGATTGCGAGATTTGACTAACCAGGCCGT
TTGGACGGTGAGTACAGCGAAACCGGGCAATGGAGTAGAGCAACTTCTGG
ATGGGGATCCAAACACCTATTGGCAATCAGACGGCCTTCAACCTCATTCA
ATTACAGCCCATTTCTCGTCCAAAGTCAAGATTTCGGAAATTCATCTATA
TCTTAACTACGACGCGGACGAAAGTTACACACCGGCCTTTATATCCATCA
TGGCAGGATCAAACTTTCAGGACCTGCAAAAGGTCAAGGAGTCACGAAAG
ATTCGGATGCCAAAAGGATGGATAGTTATTCCAATGGGCGATCAAACCGA
TGTGGACGACGAATGTAGCGACGATGAAAGCGACGTTGAACGTGAGGATA
TGGGTCAGCCGGAACGAGAGCGCATCCGACAAAGACGCGCCGAACGTCAT
AGACGAAGGACGAAAAGGCTGATAGATAGACAAGCCAAGCTTGACGAGAA
GCAAAGGAAAGCAGAACAGGACATAAATGGGGAATTCGAGGTCATGAAGG
ATCGATCTGTGACGAAGGCGCATATGATTCAGATCTTTATAATTTCCAAT
CATCTCAACGGAAGGGATTCCCACATCAGAATGGTCAGAGTCTTGGGACC
AAAAAGTCAGCTATCTAGCAGAACGTCCCGTTTTACATCACCAGAATTTC
GAATGTACGAAACGATACGGTAA
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