Ggra2609.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2609.t1
Unique Name	Ggra2609.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	600

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:944083..945882 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_02400T0
Preferred name	SPB4
PFAMs	DEAD,DUF4217,Helicase_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14809
GOs	GO:0000027,GO:0000470,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:1901360,GO:1902626,GO:1990904
Evalue	6.36e-121
EggNOG OGs	COG0513@1\|root,KOG0345@2759\|Eukaryota,38BII@33154\|Opisthokonta,3NXVX@4751\|Fungi
EC	3.6.4.13
Description	ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2
COG category	A
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2609	Ggra2609	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 944083..945882 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2609.t1.start1	Ggra2609.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 944083..944085 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2609.t1.CDS1	Ggra2609.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 944083..945882 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2609.t1.exon1	Ggra2609.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 944083..945882 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2609.t1.stop1	Ggra2609.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 945880..945882 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2609.t1	Ggra2609.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 944083..945882 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:944083..945882+
coding sequence from alignment at tig00000005_pilon:944083..945882+

mRNA sequence

>Ggra2609.t1 ID=Ggra2609.t1|Name=Ggra2609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp
MATAGPWTALRPPLAEPLVNAIHDAFRYKSMTPVQATAIPPLLTCKDVCV
QAETGSGKTLSFLIPIAQEMLKKSPKPSKRIFSLVILPTRELASQVHAVA
CTLFHNIPGDVSPVPLVGGTDCSSAGPDVKYRDHRLIIATPGRLAAALES
NQLHCNTLEMLILDEADRLLDMGFSVTLTTILTRLPRQRRTGIYSATQTD
EIISLARAGLRNPVRVVVKVDSVEGKRVVPASLSSYFDMVPQAERLARVM
DIIAREKGKFIVYFLTCACVEYYRRLPLNRMLSCALKNSSPGGQTEAEAQ
STERKFIALHGKMNQNRRNRSLTQFVESENGVLFCTDVAARGIDIPDVDW
VVQFDAPQEPDAYVHRVGRTARLGRDGKSTIFLAGSEESYVDFLKIRKCP
MVKFDLFESSDTVEDLRKVVREATLGDRAILEASELAFLSYIRAYKEHRC
RYLFKLDELDINSVADSFGLFRLPRFYEFKKLRSKIKPRGEGVNIREIKF
KDKQKETARQKKISEARQRSNERIEKIARKGKKRKRKTKAHDTTQGKVKG
NGKGKTSQVEYHIRDDEEDFSFEAMQLRKLKRGKITQETFDQLTCQDKL*

spliced messenger RNA

>Ggra2609.t1 ID=Ggra2609.t1|Name=Ggra2609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00000005_pilon:944083..945882+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCGCAGGCCCATGGACCGCTCTTCGTCCTCCTCTGGCGGAACC
ACTGGTGAATGCTATACACGATGCATTCCGCTACAAGTCTATGACCCCTG
TTCAAGCCACTGCCATACCACCCCTTCTTACCTGCAAGGATGTCTGTGTT
CAAGCAGAAACCGGTTCTGGGAAGACTCTATCTTTCTTAATTCCCATTGC
ACAGGAAATGCTGAAGAAAAGCCCTAAGCCATCGAAGCGCATTTTTTCTC
TGGTGATACTGCCTACAAGAGAATTGGCATCTCAAGTACATGCAGTGGCA
TGTACCCTTTTTCACAACATTCCCGGAGATGTATCTCCGGTTCCTCTTGT
CGGTGGAACTGATTGCAGCTCTGCTGGGCCAGATGTGAAGTACAGAGACC
ACAGGTTGATAATAGCTACCCCTGGCCGTCTTGCGGCAGCTCTGGAATCA
AACCAACTGCATTGCAACACATTAGAAATGCTCATACTTGACGAGGCTGA
TCGTTTGCTGGATATGGGATTCTCAGTAACGCTTACCACTATTCTAACCA
GATTGCCCAGGCAACGCCGCACGGGAATATATTCTGCAACACAAACGGAC
GAGATTATATCCCTGGCTCGAGCAGGACTACGGAATCCTGTGCGAGTTGT
TGTCAAGGTGGATTCTGTCGAGGGAAAGCGAGTGGTGCCAGCCTCTTTGT
CAAGTTATTTTGATATGGTTCCACAAGCAGAAAGGCTTGCACGAGTGATG
GACATTATTGCTCGTGAAAAGGGGAAGTTCATCGTCTATTTTCTGACGTG
TGCCTGTGTTGAGTACTATCGTCGTCTCCCGCTAAATAGAATGCTGTCTT
GTGCGCTGAAGAATAGCAGCCCTGGGGGGCAAACAGAGGCCGAAGCCCAG
TCAACCGAGAGAAAATTCATAGCTCTCCATGGAAAGATGAATCAGAATCG
TCGTAACCGGAGTCTAACACAGTTTGTAGAGTCTGAGAACGGAGTTTTAT
TTTGCACAGATGTGGCGGCTAGGGGGATTGACATTCCAGATGTCGACTGG
GTTGTGCAGTTCGACGCACCCCAAGAGCCCGATGCTTATGTTCATCGTGT
AGGCCGAACGGCTCGTCTGGGTCGCGACGGAAAGTCCACTATTTTTCTCG
CAGGGAGCGAAGAATCATACGTGGACTTCTTAAAAATACGGAAGTGTCCA
ATGGTCAAATTTGACTTGTTCGAGTCCAGTGACACTGTGGAGGATTTAAG
AAAGGTTGTTCGAGAAGCTACTCTAGGTGACAGAGCGATCCTGGAGGCAT
CGGAGCTCGCCTTTTTAAGTTATATAAGGGCATACAAGGAACACAGATGT
CGCTATCTTTTCAAACTTGATGAGCTTGATATAAATAGCGTAGCCGATTC
CTTTGGTTTGTTTCGGTTACCCCGCTTCTACGAGTTTAAGAAACTTCGTA
GCAAAATAAAACCTCGAGGTGAAGGCGTTAATATCCGTGAGATCAAATTC
AAGGATAAACAGAAAGAGACGGCTCGTCAGAAGAAGATATCAGAGGCAAG
GCAAAGGAGTAACGAGAGAATTGAGAAGATTGCCCgaaaaggaaagaaac
gaaaacgaaaaacaaagGCTCACGATACCACTCAGGGTAAAGTCAAGGGA
AATGGAAAAGGGAAGACCAGTCAAGTTGAGTATCACATCAGGGATGATGA
AGAGGATTTCAGCTTTGAAGCTATGCAACTAAGAAAACTGAAGCGAGGGA
AAATCACTCAAGAAACGTTTGATCAACTAACTTGTCAAGATAAACTATGA

protein sequence of Ggra2609.t1

>Ggra2609.t1 ID=Ggra2609.t1|Name=Ggra2609.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=600bp
MATAGPWTALRPPLAEPLVNAIHDAFRYKSMTPVQATAIPPLLTCKDVCV
QAETGSGKTLSFLIPIAQEMLKKSPKPSKRIFSLVILPTRELASQVHAVA
CTLFHNIPGDVSPVPLVGGTDCSSAGPDVKYRDHRLIIATPGRLAAALES
NQLHCNTLEMLILDEADRLLDMGFSVTLTTILTRLPRQRRTGIYSATQTD
EIISLARAGLRNPVRVVVKVDSVEGKRVVPASLSSYFDMVPQAERLARVM
DIIAREKGKFIVYFLTCACVEYYRRLPLNRMLSCALKNSSPGGQTEAEAQ
STERKFIALHGKMNQNRRNRSLTQFVESENGVLFCTDVAARGIDIPDVDW
VVQFDAPQEPDAYVHRVGRTARLGRDGKSTIFLAGSEESYVDFLKIRKCP
MVKFDLFESSDTVEDLRKVVREATLGDRAILEASELAFLSYIRAYKEHRC
RYLFKLDELDINSVADSFGLFRLPRFYEFKKLRSKIKPRGEGVNIREIKF
KDKQKETARQKKISEARQRSNERIEKIARKGKKRKRKTKAHDTTQGKVKG
NGKGKTSQVEYHIRDDEEDFSFEAMQLRKLKRGKITQETFDQLTCQDKL*

mRNA from alignment at tig00000005_pilon:944083..945882+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2609.t1 ID=Ggra2609.t1|Name=Ggra2609.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00000005_pilon:944083..945882+ (Gracilaria gracilis GNS1m male)
ATGGCCACCGCAGGCCCATGGACCGCTCTTCGTCCTCCTCTGGCGGAACC
ACTGGTGAATGCTATACACGATGCATTCCGCTACAAGTCTATGACCCCTG
TTCAAGCCACTGCCATACCACCCCTTCTTACCTGCAAGGATGTCTGTGTT
CAAGCAGAAACCGGTTCTGGGAAGACTCTATCTTTCTTAATTCCCATTGC
ACAGGAAATGCTGAAGAAAAGCCCTAAGCCATCGAAGCGCATTTTTTCTC
TGGTGATACTGCCTACAAGAGAATTGGCATCTCAAGTACATGCAGTGGCA
TGTACCCTTTTTCACAACATTCCCGGAGATGTATCTCCGGTTCCTCTTGT
CGGTGGAACTGATTGCAGCTCTGCTGGGCCAGATGTGAAGTACAGAGACC
ACAGGTTGATAATAGCTACCCCTGGCCGTCTTGCGGCAGCTCTGGAATCA
AACCAACTGCATTGCAACACATTAGAAATGCTCATACTTGACGAGGCTGA
TCGTTTGCTGGATATGGGATTCTCAGTAACGCTTACCACTATTCTAACCA
GATTGCCCAGGCAACGCCGCACGGGAATATATTCTGCAACACAAACGGAC
GAGATTATATCCCTGGCTCGAGCAGGACTACGGAATCCTGTGCGAGTTGT
TGTCAAGGTGGATTCTGTCGAGGGAAAGCGAGTGGTGCCAGCCTCTTTGT
CAAGTTATTTTGATATGGTTCCACAAGCAGAAAGGCTTGCACGAGTGATG
GACATTATTGCTCGTGAAAAGGGGAAGTTCATCGTCTATTTTCTGACGTG
TGCCTGTGTTGAGTACTATCGTCGTCTCCCGCTAAATAGAATGCTGTCTT
GTGCGCTGAAGAATAGCAGCCCTGGGGGGCAAACAGAGGCCGAAGCCCAG
TCAACCGAGAGAAAATTCATAGCTCTCCATGGAAAGATGAATCAGAATCG
TCGTAACCGGAGTCTAACACAGTTTGTAGAGTCTGAGAACGGAGTTTTAT
TTTGCACAGATGTGGCGGCTAGGGGGATTGACATTCCAGATGTCGACTGG
GTTGTGCAGTTCGACGCACCCCAAGAGCCCGATGCTTATGTTCATCGTGT
AGGCCGAACGGCTCGTCTGGGTCGCGACGGAAAGTCCACTATTTTTCTCG
CAGGGAGCGAAGAATCATACGTGGACTTCTTAAAAATACGGAAGTGTCCA
ATGGTCAAATTTGACTTGTTCGAGTCCAGTGACACTGTGGAGGATTTAAG
AAAGGTTGTTCGAGAAGCTACTCTAGGTGACAGAGCGATCCTGGAGGCAT
CGGAGCTCGCCTTTTTAAGTTATATAAGGGCATACAAGGAACACAGATGT
CGCTATCTTTTCAAACTTGATGAGCTTGATATAAATAGCGTAGCCGATTC
CTTTGGTTTGTTTCGGTTACCCCGCTTCTACGAGTTTAAGAAACTTCGTA
GCAAAATAAAACCTCGAGGTGAAGGCGTTAATATCCGTGAGATCAAATTC
AAGGATAAACAGAAAGAGACGGCTCGTCAGAAGAAGATATCAGAGGCAAG
GCAAAGGAGTAACGAGAGAATTGAGAAGATTGCCCgaaaaggaaagaaac
gaaaacgaaaaacaaagGCTCACGATACCACTCAGGGTAAAGTCAAGGGA
AATGGAAAAGGGAAGACCAGTCAAGTTGAGTATCACATCAGGGATGATGA
AGAGGATTTCAGCTTTGAAGCTATGCAACTAAGAAAACTGAAGCGAGGGA
AAATCACTCAAGAAACGTTTGATCAACTAACTTGTCAAGATAAACTATGA

Coding sequence (CDS) from alignment at tig00000005_pilon:944083..945882+

>Ggra2609.t1 ID=Ggra2609.t1|Name=Ggra2609.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1800bp|location=Sequence derived from alignment at tig00000005_pilon:944083..945882+ (Gracilaria gracilis GNS1m male)
ATGGCCACCGCAGGCCCATGGACCGCTCTTCGTCCTCCTCTGGCGGAACC
ACTGGTGAATGCTATACACGATGCATTCCGCTACAAGTCTATGACCCCTG
TTCAAGCCACTGCCATACCACCCCTTCTTACCTGCAAGGATGTCTGTGTT
CAAGCAGAAACCGGTTCTGGGAAGACTCTATCTTTCTTAATTCCCATTGC
ACAGGAAATGCTGAAGAAAAGCCCTAAGCCATCGAAGCGCATTTTTTCTC
TGGTGATACTGCCTACAAGAGAATTGGCATCTCAAGTACATGCAGTGGCA
TGTACCCTTTTTCACAACATTCCCGGAGATGTATCTCCGGTTCCTCTTGT
CGGTGGAACTGATTGCAGCTCTGCTGGGCCAGATGTGAAGTACAGAGACC
ACAGGTTGATAATAGCTACCCCTGGCCGTCTTGCGGCAGCTCTGGAATCA
AACCAACTGCATTGCAACACATTAGAAATGCTCATACTTGACGAGGCTGA
TCGTTTGCTGGATATGGGATTCTCAGTAACGCTTACCACTATTCTAACCA
GATTGCCCAGGCAACGCCGCACGGGAATATATTCTGCAACACAAACGGAC
GAGATTATATCCCTGGCTCGAGCAGGACTACGGAATCCTGTGCGAGTTGT
TGTCAAGGTGGATTCTGTCGAGGGAAAGCGAGTGGTGCCAGCCTCTTTGT
CAAGTTATTTTGATATGGTTCCACAAGCAGAAAGGCTTGCACGAGTGATG
GACATTATTGCTCGTGAAAAGGGGAAGTTCATCGTCTATTTTCTGACGTG
TGCCTGTGTTGAGTACTATCGTCGTCTCCCGCTAAATAGAATGCTGTCTT
GTGCGCTGAAGAATAGCAGCCCTGGGGGGCAAACAGAGGCCGAAGCCCAG
TCAACCGAGAGAAAATTCATAGCTCTCCATGGAAAGATGAATCAGAATCG
TCGTAACCGGAGTCTAACACAGTTTGTAGAGTCTGAGAACGGAGTTTTAT
TTTGCACAGATGTGGCGGCTAGGGGGATTGACATTCCAGATGTCGACTGG
GTTGTGCAGTTCGACGCACCCCAAGAGCCCGATGCTTATGTTCATCGTGT
AGGCCGAACGGCTCGTCTGGGTCGCGACGGAAAGTCCACTATTTTTCTCG
CAGGGAGCGAAGAATCATACGTGGACTTCTTAAAAATACGGAAGTGTCCA
ATGGTCAAATTTGACTTGTTCGAGTCCAGTGACACTGTGGAGGATTTAAG
AAAGGTTGTTCGAGAAGCTACTCTAGGTGACAGAGCGATCCTGGAGGCAT
CGGAGCTCGCCTTTTTAAGTTATATAAGGGCATACAAGGAACACAGATGT
CGCTATCTTTTCAAACTTGATGAGCTTGATATAAATAGCGTAGCCGATTC
CTTTGGTTTGTTTCGGTTACCCCGCTTCTACGAGTTTAAGAAACTTCGTA
GCAAAATAAAACCTCGAGGTGAAGGCGTTAATATCCGTGAGATCAAATTC
AAGGATAAACAGAAAGAGACGGCTCGTCAGAAGAAGATATCAGAGGCAAG
GCAAAGGAGTAACGAGAGAATTGAGAAGATTGCCCgaaaaggaaagaaac
gaaaacgaaaaacaaagGCTCACGATACCACTCAGGGTAAAGTCAAGGGA
AATGGAAAAGGGAAGACCAGTCAAGTTGAGTATCACATCAGGGATGATGA
AGAGGATTTCAGCTTTGAAGCTATGCAACTAAGAAAACTGAAGCGAGGGA
AAATCACTCAAGAAACGTTTGATCAACTAACTTGTCAAGATAAACTATGA