Ggra2599.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2599.t1
Unique Name	Ggra2599.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:901042..902469 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2599	Ggra2599	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 901042..902469 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2599.t1.stop1	Ggra2599.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 901042..901044 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2599.t1.CDS1	Ggra2599.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 901042..902469 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2599.t1.exon1	Ggra2599.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 901042..902469 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2599.t1.start1	Ggra2599.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 902467..902469 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2599.t1	Ggra2599.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 901042..902469 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:901042..902469-
coding sequence from alignment at tig00000005_pilon:901042..902469-

mRNA sequence

>Ggra2599.t1 ID=Ggra2599.t1|Name=Ggra2599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=476bp
MVSFTHMWPAELEAIPLLPKLPTLTPTAHILRHLRTVLFGATQNGEHLTT
LVARPSATRATQVSFSPQTETQDASQPANLLIDGFAHNLSHNTVPIPVYA
QLSEELPILKYLPPGDTALTVFPIAAACRLRGTDLEVTFSTRIPDIQFYS
FGEQALDESEVRLSENSLSILLRTELSNGHGLLEQRSSTTMSVQPVRMRD
TTSITRVAGAWYSGNKEEYNAAITTLGRHLARRRNRRIALSSSSPTAPVV
AKAIILRFDKSVKVRWMYILARSTTTKWTCVCQGNGAAGVPITFQVSERL
FSPGVLGRQKNVHDGRRHLTPRQSSSRKETPRSSRRSGHKRRSSVEGSTV
LKDTPSASRVRQSSDERKKEESFMTEKMTELKFVDEPGDAVSSTPSSTDL
PLPTRIRSNGIDEEGTDLSGELSLGLESTITSLENTVLSNVYNDDESTIA
ELCRKYLNVDYNEEVAKEISAHLNE*

spliced messenger RNA

>Ggra2599.t1 ID=Ggra2599.t1|Name=Ggra2599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000005_pilon:901042..902469- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGTTCACGCACATGTGGCCAGCCGAGCTCGAGGCTATTCCACT
TCTCCCAAAACTACCCACTCTCACGCCGACTGCTCATATTCTACGCCACC
TTCGGACTGTGTTGTTTGGGGCTACACAAAATGGAGAACATTTGACGACC
CTGGTCGCAAGACCCTCTGCCACAAGGGCAACGCAGGTCTCGTTTTCCCC
ACAGACTGAGACTCAAGATGCATCACAACCAGCGAACCTGCTAATTGATG
GATTTGCGCACAATCTTTCACACAATACCGTACCAATACCAGTCTACGCC
CAACTATCTGAAGAACTACCGATTCTGAAGTATCTTCCTCCTGGAGATAC
AGCCTTGACAGTCTTTCCAATTGCAGCGGCCTGTCGCTTGAGAGGAACTG
ACCTCGAGGTAACATTTTCAACCCGAATACCGGACATCCAATTCTACTCT
TTCGGGGAACAGGCCCTGGATGAGTCCGAAGTGAGGCTTTCTGAGAATAG
TCTCTCTATCCTACTGCGAACAGAACTAAGCAACGGACATGGATTGCTGG
AACAACGAAGTTCCACGACCATGTCTGTGCAGCCTGTTCGCATGCGAGAT
ACGACAAGCATAACACGAGTTGCAGGAGCTTGGTATTCGGGAAACAAAGA
AGAATACAATGCTGCCATTACAACACTTGGACGACATCTTGCTCGACGGC
GAAACCGTCGCATCGCGCTTTCTTCCTCTTCCCCCACAGCTCCAGTTGTG
GCGAAAGCCATCATTCTTCGATTTGATAAGTCAGTTAAAGTTCGATGGAT
GTACATATTAGCCCGATCAACAACTACGAAATGGACATGCGTCTGTCAGG
GAAACGGAGCTGCTGGAGTTCCCATAACTTTCCAGGTTTCGGAGCGATTG
TTTAGTCCTGGTGTTTTGGGAAGGCAAAAGAATGTGCATGATGGGAGACG
TCATCTGACACCTCGTCAATCGAGCTCTAGGAAAGAGACACCTAGAAGTT
CAAGGCGTAGTGGACACAAGAGAAGAAGTAGTGTGGAAGGAAGCACCGTG
CTCAAGGACACCCCTTCTGCAAGTAGAGTTCGACAGAGCTCCGATGAACG
CAAGAAAGAAGAGTCGTTTATGACAGAAAAAATGACAGAGTTGAAGTTCG
TTGATGAACCGGGGGACGCAGTTAGCTCAACGCCCTCTAGTACAGATTTG
CCTCTCCCCACTCGGATACGATCAAATGGGATTGATGAAGAAGGCACGGA
CCTTTCGGGTGAACTGAGTCTTGGATTGGAATCCACAATCACTAGTCTCG
AGAATACCGTGTTGAGTAATGTTTACAACGATGATGAGTCCACTATCGCT
GAGCTATGTCGCAAATATCTTAATGTGGATTACAATGAAGAAGTAGCCAA
AGAGATTTCTGCTCATTTGAATGAATAG

protein sequence of Ggra2599.t1

>Ggra2599.t1 ID=Ggra2599.t1|Name=Ggra2599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=476bp
MVSFTHMWPAELEAIPLLPKLPTLTPTAHILRHLRTVLFGATQNGEHLTT
LVARPSATRATQVSFSPQTETQDASQPANLLIDGFAHNLSHNTVPIPVYA
QLSEELPILKYLPPGDTALTVFPIAAACRLRGTDLEVTFSTRIPDIQFYS
FGEQALDESEVRLSENSLSILLRTELSNGHGLLEQRSSTTMSVQPVRMRD
TTSITRVAGAWYSGNKEEYNAAITTLGRHLARRRNRRIALSSSSPTAPVV
AKAIILRFDKSVKVRWMYILARSTTTKWTCVCQGNGAAGVPITFQVSERL
FSPGVLGRQKNVHDGRRHLTPRQSSSRKETPRSSRRSGHKRRSSVEGSTV
LKDTPSASRVRQSSDERKKEESFMTEKMTELKFVDEPGDAVSSTPSSTDL
PLPTRIRSNGIDEEGTDLSGELSLGLESTITSLENTVLSNVYNDDESTIA
ELCRKYLNVDYNEEVAKEISAHLNE*

mRNA from alignment at tig00000005_pilon:901042..902469-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2599.t1 ID=Ggra2599.t1|Name=Ggra2599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000005_pilon:901042..902469- (Gracilaria gracilis GNS1m male)
ATGGTGTCGTTCACGCACATGTGGCCAGCCGAGCTCGAGGCTATTCCACT
TCTCCCAAAACTACCCACTCTCACGCCGACTGCTCATATTCTACGCCACC
TTCGGACTGTGTTGTTTGGGGCTACACAAAATGGAGAACATTTGACGACC
CTGGTCGCAAGACCCTCTGCCACAAGGGCAACGCAGGTCTCGTTTTCCCC
ACAGACTGAGACTCAAGATGCATCACAACCAGCGAACCTGCTAATTGATG
GATTTGCGCACAATCTTTCACACAATACCGTACCAATACCAGTCTACGCC
CAACTATCTGAAGAACTACCGATTCTGAAGTATCTTCCTCCTGGAGATAC
AGCCTTGACAGTCTTTCCAATTGCAGCGGCCTGTCGCTTGAGAGGAACTG
ACCTCGAGGTAACATTTTCAACCCGAATACCGGACATCCAATTCTACTCT
TTCGGGGAACAGGCCCTGGATGAGTCCGAAGTGAGGCTTTCTGAGAATAG
TCTCTCTATCCTACTGCGAACAGAACTAAGCAACGGACATGGATTGCTGG
AACAACGAAGTTCCACGACCATGTCTGTGCAGCCTGTTCGCATGCGAGAT
ACGACAAGCATAACACGAGTTGCAGGAGCTTGGTATTCGGGAAACAAAGA
AGAATACAATGCTGCCATTACAACACTTGGACGACATCTTGCTCGACGGC
GAAACCGTCGCATCGCGCTTTCTTCCTCTTCCCCCACAGCTCCAGTTGTG
GCGAAAGCCATCATTCTTCGATTTGATAAGTCAGTTAAAGTTCGATGGAT
GTACATATTAGCCCGATCAACAACTACGAAATGGACATGCGTCTGTCAGG
GAAACGGAGCTGCTGGAGTTCCCATAACTTTCCAGGTTTCGGAGCGATTG
TTTAGTCCTGGTGTTTTGGGAAGGCAAAAGAATGTGCATGATGGGAGACG
TCATCTGACACCTCGTCAATCGAGCTCTAGGAAAGAGACACCTAGAAGTT
CAAGGCGTAGTGGACACAAGAGAAGAAGTAGTGTGGAAGGAAGCACCGTG
CTCAAGGACACCCCTTCTGCAAGTAGAGTTCGACAGAGCTCCGATGAACG
CAAGAAAGAAGAGTCGTTTATGACAGAAAAAATGACAGAGTTGAAGTTCG
TTGATGAACCGGGGGACGCAGTTAGCTCAACGCCCTCTAGTACAGATTTG
CCTCTCCCCACTCGGATACGATCAAATGGGATTGATGAAGAAGGCACGGA
CCTTTCGGGTGAACTGAGTCTTGGATTGGAATCCACAATCACTAGTCTCG
AGAATACCGTGTTGAGTAATGTTTACAACGATGATGAGTCCACTATCGCT
GAGCTATGTCGCAAATATCTTAATGTGGATTACAATGAAGAAGTAGCCAA
AGAGATTTCTGCTCATTTGAATGAATAG

Coding sequence (CDS) from alignment at tig00000005_pilon:901042..902469-

>Ggra2599.t1 ID=Ggra2599.t1|Name=Ggra2599.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00000005_pilon:901042..902469- (Gracilaria gracilis GNS1m male)
ATGGTGTCGTTCACGCACATGTGGCCAGCCGAGCTCGAGGCTATTCCACT
TCTCCCAAAACTACCCACTCTCACGCCGACTGCTCATATTCTACGCCACC
TTCGGACTGTGTTGTTTGGGGCTACACAAAATGGAGAACATTTGACGACC
CTGGTCGCAAGACCCTCTGCCACAAGGGCAACGCAGGTCTCGTTTTCCCC
ACAGACTGAGACTCAAGATGCATCACAACCAGCGAACCTGCTAATTGATG
GATTTGCGCACAATCTTTCACACAATACCGTACCAATACCAGTCTACGCC
CAACTATCTGAAGAACTACCGATTCTGAAGTATCTTCCTCCTGGAGATAC
AGCCTTGACAGTCTTTCCAATTGCAGCGGCCTGTCGCTTGAGAGGAACTG
ACCTCGAGGTAACATTTTCAACCCGAATACCGGACATCCAATTCTACTCT
TTCGGGGAACAGGCCCTGGATGAGTCCGAAGTGAGGCTTTCTGAGAATAG
TCTCTCTATCCTACTGCGAACAGAACTAAGCAACGGACATGGATTGCTGG
AACAACGAAGTTCCACGACCATGTCTGTGCAGCCTGTTCGCATGCGAGAT
ACGACAAGCATAACACGAGTTGCAGGAGCTTGGTATTCGGGAAACAAAGA
AGAATACAATGCTGCCATTACAACACTTGGACGACATCTTGCTCGACGGC
GAAACCGTCGCATCGCGCTTTCTTCCTCTTCCCCCACAGCTCCAGTTGTG
GCGAAAGCCATCATTCTTCGATTTGATAAGTCAGTTAAAGTTCGATGGAT
GTACATATTAGCCCGATCAACAACTACGAAATGGACATGCGTCTGTCAGG
GAAACGGAGCTGCTGGAGTTCCCATAACTTTCCAGGTTTCGGAGCGATTG
TTTAGTCCTGGTGTTTTGGGAAGGCAAAAGAATGTGCATGATGGGAGACG
TCATCTGACACCTCGTCAATCGAGCTCTAGGAAAGAGACACCTAGAAGTT
CAAGGCGTAGTGGACACAAGAGAAGAAGTAGTGTGGAAGGAAGCACCGTG
CTCAAGGACACCCCTTCTGCAAGTAGAGTTCGACAGAGCTCCGATGAACG
CAAGAAAGAAGAGTCGTTTATGACAGAAAAAATGACAGAGTTGAAGTTCG
TTGATGAACCGGGGGACGCAGTTAGCTCAACGCCCTCTAGTACAGATTTG
CCTCTCCCCACTCGGATACGATCAAATGGGATTGATGAAGAAGGCACGGA
CCTTTCGGGTGAACTGAGTCTTGGATTGGAATCCACAATCACTAGTCTCG
AGAATACCGTGTTGAGTAATGTTTACAACGATGATGAGTCCACTATCGCT
GAGCTATGTCGCAAATATCTTAATGTGGATTACAATGAAGAAGTAGCCAA
AGAGATTTCTGCTCATTTGAATGAATAG