Ggra2573.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2573.t1
Unique NameGgra2573.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length394
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:806430..807818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002502601.1
PFAMsAbhydrolase_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00037,RC00094
KEGG koko:K06130
KEGG ReactionR02747,R03417
KEGG Pathwayko00564,map00564
Evalue0.000101
EggNOG OGsCOG0400@1|root,KOG2112@2759|Eukaryota
EC3.1.1.5
Descriptionacyl-protein thioesterase
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2573Ggra2573Gracilaria gracilis GNS1m malegenetig00000005_pilon 806430..807818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2573.t1Ggra2573.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 806430..807818 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2573.t1.start1Ggra2573.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 806430..806432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2573.t1.CDS1Ggra2573.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 806430..806993 +
Ggra2573.t1.CDS2Ggra2573.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 807201..807818 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2573.t1.exon1Ggra2573.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 806430..806993 +
Ggra2573.t1.exon2Ggra2573.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 807201..807818 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2573.t1.intron1Ggra2573.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 806994..807200 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2573.t1.stop1Ggra2573.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 807816..807818 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2573.t1 ID=Ggra2573.t1|Name=Ggra2573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=394bp
MARVAALRCAALALVLLLSFACVFAKPDALHALQHVRRAQVRQSSPVLAP
LQPRHVANIVSKLHSIVTELVTEFDDRMSLEPTAELDDQVDVSSSEELPE
ISLEPENDHAPASSAPTASIAPSLLPLSTTVTSSRGRRSYSPIIPPSDTV
VASAEMDDFEEHISLEETIAEHHHEQPSVAPTNFFPSTEKPIRTLTFGFK
GYTDSIVLLLPDSGETAQDMESFVHQLREEGFTRTKFIAIQPKDIWISNK
GSKQPAWFDASDPTLGAPRQSQILRATENVMKVARGRRPTIIGFGQGGAI
ALTAYMRYGVDGVVSSCGGLPLVGTYPKEMTDDSKDSMALVIGGDHVAGG
VERMLDARREVVFLRTNQPKENGRFKENVIGYVVGVLNRAIAT*
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spliced messenger RNA

>Ggra2573.t1 ID=Ggra2573.t1|Name=Ggra2573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000005_pilon:806430..807818+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGgctcgcgtggctgcgctacgctgtgccgcgctcgcgctcgtgctgct
gctgTCTTTCGCCTGCGTGTTCGCCAAGCCCGATGCATTGCACGCGCTGC
AACATGTGCGCCGCGCGCAGGTTCGTCAGTCGTCGCCCGTGCTTGCGCCG
CTTCAACCGCGTCATGTCGCAAACATTGTCAGCAAGCTCCATTCCATTGT
CACCGAGCTTGTCACAGAGTTTGACGACAGGATGAGCTTGGAGCCGACAG
CGGAGCTAGACGACCAAGTCGACGTTTCATCGTCAGAAGAGCTGCCCGAA
ATCTCCCTCGAGCCAGAGAACGACCATGCACCCGCCTCCTCCGCACCCAC
CGCGTCTATAGCCCCATCGCTCCTTCCGCTCAGCACCACCGTAACCTCTT
CCCGGGGGAGAAGGTCATACTCTCCAATCATCCCGCCGAGCGATACAGTA
GTGGCGAGTGCGGAAATGGACGACTTTGAGGAACACATCTCCCTTGAAGA
GACCATCGCTGAACACCACCACGAACAACCTTCTGTTGCGCCTACAAACT
TCTTTCCCTCAACTGAGAAACCGATACGTACGTTGACCTTTGGATTCAAG
GGCTACACCGACTCTATAGTGCTACTGTTGCCAGACTCTGGCGAGACCGC
ACAAGATATGGAATCCTTCGTGCATCAGCTCCGAGAAGAGGGCTTCACTA
GAACCAAGTTTATAGCTATACAACCAAAAGACATTTGGATTTCCAACAAG
GGCAGCAAACAACCCGCATGGTTTGACGCATCGGATCCAACCTTGGGAGC
TCCCCGCCAATCTCAAATTCTCCGTGCCACAGAGAACGTCATGAAGGTTG
CGCGCGGTCGCCGCCCGACTATTATTGGCTTTGGCCAAGGCGGAGCAATA
GCTTTGACAGCATACATGAGATACGGCGTGGACGGAGTCGTGAGCTCGTG
TGGCGGCTTACCTTTGGTGGGAACATATCCCAAAGAAATGACTGACGACA
GTAAGGACAGTATGGCTTTGGTCATAGGAGGAGATCACGTTGCTGGTGGA
GTGGAGCGCATGCTAGATGCCCGCCGAGAGGTGGTGTTCCTTAGAACCAA
CCAGCCGAAGGAGAATGGTCGCTTTAAGGAAAATGTCATCGGCTACGTGG
TTGGGGTCCTGAATCGTGCGATTGCCACATAA
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protein sequence of Ggra2573.t1

>Ggra2573.t1 ID=Ggra2573.t1|Name=Ggra2573.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=394bp
MARVAALRCAALALVLLLSFACVFAKPDALHALQHVRRAQVRQSSPVLAP
LQPRHVANIVSKLHSIVTELVTEFDDRMSLEPTAELDDQVDVSSSEELPE
ISLEPENDHAPASSAPTASIAPSLLPLSTTVTSSRGRRSYSPIIPPSDTV
VASAEMDDFEEHISLEETIAEHHHEQPSVAPTNFFPSTEKPIRTLTFGFK
GYTDSIVLLLPDSGETAQDMESFVHQLREEGFTRTKFIAIQPKDIWISNK
GSKQPAWFDASDPTLGAPRQSQILRATENVMKVARGRRPTIIGFGQGGAI
ALTAYMRYGVDGVVSSCGGLPLVGTYPKEMTDDSKDSMALVIGGDHVAGG
VERMLDARREVVFLRTNQPKENGRFKENVIGYVVGVLNRAIAT*
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mRNA from alignment at tig00000005_pilon:806430..807818+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2573.t1 ID=Ggra2573.t1|Name=Ggra2573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000005_pilon:806430..807818+ (Gracilaria gracilis GNS1m male)
ATGgctcgcgtggctgcgctacgctgtgccgcgctcgcgctcgtgctgct
gctgTCTTTCGCCTGCGTGTTCGCCAAGCCCGATGCATTGCACGCGCTGC
AACATGTGCGCCGCGCGCAGGTTCGTCAGTCGTCGCCCGTGCTTGCGCCG
CTTCAACCGCGTCATGTCGCAAACATTGTCAGCAAGCTCCATTCCATTGT
CACCGAGCTTGTCACAGAGTTTGACGACAGGATGAGCTTGGAGCCGACAG
CGGAGCTAGACGACCAAGTCGACGTTTCATCGTCAGAAGAGCTGCCCGAA
ATCTCCCTCGAGCCAGAGAACGACCATGCACCCGCCTCCTCCGCACCCAC
CGCGTCTATAGCCCCATCGCTCCTTCCGCTCAGCACCACCGTAACCTCTT
CCCGGGGGAGAAGGTCATACTCTCCAATCATCCCGCCGAGCGATACAGTA
GTGGCGAGTGCGGAAATGGACGACTTTGAGGAACACATCTCCCTTGAAGA
GACCATCGCTGAACACCACCACGAACAACCTTCTGTTGCGCCTACAAACT
TCTTTCCCTCAACTGTTACTAAAACCCCGCAACCGGTCGAGCAATCCCAT
AAACCGTCAGTTGCACCCCCACTttcgccttcgtctttgccttcgtcttt
gccttcgtcttcgccgtcgccttcgtcttcgccgtcgcctacaccttcgc
cgtcgcctacaccttcgccgtcgcctacaccttcgctgtcgcctacacct
tcgccgtcgccgtctccaAAGGAGAAACCGATACGTACGTTGACCTTTGG
ATTCAAGGGCTACACCGACTCTATAGTGCTACTGTTGCCAGACTCTGGCG
AGACCGCACAAGATATGGAATCCTTCGTGCATCAGCTCCGAGAAGAGGGC
TTCACTAGAACCAAGTTTATAGCTATACAACCAAAAGACATTTGGATTTC
CAACAAGGGCAGCAAACAACCCGCATGGTTTGACGCATCGGATCCAACCT
TGGGAGCTCCCCGCCAATCTCAAATTCTCCGTGCCACAGAGAACGTCATG
AAGGTTGCGCGCGGTCGCCGCCCGACTATTATTGGCTTTGGCCAAGGCGG
AGCAATAGCTTTGACAGCATACATGAGATACGGCGTGGACGGAGTCGTGA
GCTCGTGTGGCGGCTTACCTTTGGTGGGAACATATCCCAAAGAAATGACT
GACGACAGTAAGGACAGTATGGCTTTGGTCATAGGAGGAGATCACGTTGC
TGGTGGAGTGGAGCGCATGCTAGATGCCCGCCGAGAGGTGGTGTTCCTTA
GAACCAACCAGCCGAAGGAGAATGGTCGCTTTAAGGAAAATGTCATCGGC
TACGTGGTTGGGGTCCTGAATCGTGCGATTGCCACATAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:806430..807818+

>Ggra2573.t1 ID=Ggra2573.t1|Name=Ggra2573.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00000005_pilon:806430..807818+ (Gracilaria gracilis GNS1m male)
ATGgctcgcgtggctgcgctacgctgtgccgcgctcgcgctcgtgctgct
gctgTCTTTCGCCTGCGTGTTCGCCAAGCCCGATGCATTGCACGCGCTGC
AACATGTGCGCCGCGCGCAGGTTCGTCAGTCGTCGCCCGTGCTTGCGCCG
CTTCAACCGCGTCATGTCGCAAACATTGTCAGCAAGCTCCATTCCATTGT
CACCGAGCTTGTCACAGAGTTTGACGACAGGATGAGCTTGGAGCCGACAG
CGGAGCTAGACGACCAAGTCGACGTTTCATCGTCAGAAGAGCTGCCCGAA
ATCTCCCTCGAGCCAGAGAACGACCATGCACCCGCCTCCTCCGCACCCAC
CGCGTCTATAGCCCCATCGCTCCTTCCGCTCAGCACCACCGTAACCTCTT
CCCGGGGGAGAAGGTCATACTCTCCAATCATCCCGCCGAGCGATACAGTA
GTGGCGAGTGCGGAAATGGACGACTTTGAGGAACACATCTCCCTTGAAGA
GACCATCGCTGAACACCACCACGAACAACCTTCTGTTGCGCCTACAAACT
TCTTTCCCTCAACTGAGAAACCGATACGTACGTTGACCTTTGGATTCAAG
GGCTACACCGACTCTATAGTGCTACTGTTGCCAGACTCTGGCGAGACCGC
ACAAGATATGGAATCCTTCGTGCATCAGCTCCGAGAAGAGGGCTTCACTA
GAACCAAGTTTATAGCTATACAACCAAAAGACATTTGGATTTCCAACAAG
GGCAGCAAACAACCCGCATGGTTTGACGCATCGGATCCAACCTTGGGAGC
TCCCCGCCAATCTCAAATTCTCCGTGCCACAGAGAACGTCATGAAGGTTG
CGCGCGGTCGCCGCCCGACTATTATTGGCTTTGGCCAAGGCGGAGCAATA
GCTTTGACAGCATACATGAGATACGGCGTGGACGGAGTCGTGAGCTCGTG
TGGCGGCTTACCTTTGGTGGGAACATATCCCAAAGAAATGACTGACGACA
GTAAGGACAGTATGGCTTTGGTCATAGGAGGAGATCACGTTGCTGGTGGA
GTGGAGCGCATGCTAGATGCCCGCCGAGAGGTGGTGTTCCTTAGAACCAA
CCAGCCGAAGGAGAATGGTCGCTTTAAGGAAAATGTCATCGGCTACGTGG
TTGGGGTCCTGAATCGTGCGATTGCCACATAA
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