Ggra2567.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2567.t1
Unique NameGgra2567.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:792282..792827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_028_00228.1
PFAMsTim17
Max annot lvl35493|Streptophyta
KEGG koko:K17790
KEGG TC3.A.8.1
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009707,GO:0009941,GO:0015031,GO:0015833,GO:0016020,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042170,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046907,GO:0046983,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0098588,GO:0098805
Evalue3e-12
EggNOG OGsCOG5596@1|root,KOG1652@2759|Eukaryota,37U4J@33090|Viridiplantae,3GI8R@35493|Streptophyta
DescriptionMitochondrial import inner membrane translocase subunit
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2567Ggra2567Gracilaria gracilis GNS1m malegenetig00000005_pilon 792282..792827 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2567.t1.start1Ggra2567.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 792282..792284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2567.t1.CDS1Ggra2567.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 792282..792827 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2567.t1.exon1Ggra2567.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 792282..792827 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2567.t1.stop1Ggra2567.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 792825..792827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2567.t1Ggra2567.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 792282..792827 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2567.t1 ID=Ggra2567.t1|Name=Ggra2567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=182bp
MNRRSALTPALCPHPRSVRRVPAFAHAHANAAPSAPPLGQQLTLQSLTPT
ERLLEVFLATSSSMLNGGVFGAIFGFFSGLWTNRGAFRPAFAEAGNNLRS
WAAISAVYAGLQTASKVIRNKDDRYNSVIGACGSGATFYVRSGPRAAAQG
CVTFAALSYLIDALVVPKEDPNSDEAILRKR*
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spliced messenger RNA

>Ggra2567.t1 ID=Ggra2567.t1|Name=Ggra2567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000005_pilon:792282..792827+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGCCGATCTGCGCTCACGCCCGCGCTCTGCCCCCATCCGCGCTC
CGTGCGTCGCGTGCCGGCCTTCGCACACGCGCACGCCAACGCCGCGCCGT
CCGCGCCGCCGCTTGGGCAGCAACTCACCTTGCAGTCGCTCACGCCCACG
GAGCGCTTGCTGGAGGTGTTTCTCGCCACCTCGTCGAGTATGTTGAATGG
CGGCGTGTTCGGTGCCATCTTCGGCTTCTTCTCCGGCTTGTGGACCAATC
GCGGCGCCTTTCGACCGGCGTTTGCGGAGGCTGGTAACAACCTCAGGTCG
TGGGCTGCCATTTCGGCCGTTTATGCCGGCTTGCAGACTGCTAGTAAGGT
GATTCGAAACAAGGATGATCGCTACAATTCCGTCATTGGCGCTTGTGGCA
GTGGTGCTACTTTTTATGTTCGTTCGGGTCCGCGCGCTGCCGCACAGGGA
TGTGTCACTTTCGCCGCGCTCAGTTATCTCATTGATGCGCTGGTAGTGCC
CAAGGAAGATCCTAACAGTGATGAAGCCATACTTAGAAAACGCTAA
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protein sequence of Ggra2567.t1

>Ggra2567.t1 ID=Ggra2567.t1|Name=Ggra2567.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MNRRSALTPALCPHPRSVRRVPAFAHAHANAAPSAPPLGQQLTLQSLTPT
ERLLEVFLATSSSMLNGGVFGAIFGFFSGLWTNRGAFRPAFAEAGNNLRS
WAAISAVYAGLQTASKVIRNKDDRYNSVIGACGSGATFYVRSGPRAAAQG
CVTFAALSYLIDALVVPKEDPNSDEAILRKR*
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mRNA from alignment at tig00000005_pilon:792282..792827+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2567.t1 ID=Ggra2567.t1|Name=Ggra2567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000005_pilon:792282..792827+ (Gracilaria gracilis GNS1m male)
ATGAATCGCCGATCTGCGCTCACGCCCGCGCTCTGCCCCCATCCGCGCTC
CGTGCGTCGCGTGCCGGCCTTCGCACACGCGCACGCCAACGCCGCGCCGT
CCGCGCCGCCGCTTGGGCAGCAACTCACCTTGCAGTCGCTCACGCCCACG
GAGCGCTTGCTGGAGGTGTTTCTCGCCACCTCGTCGAGTATGTTGAATGG
CGGCGTGTTCGGTGCCATCTTCGGCTTCTTCTCCGGCTTGTGGACCAATC
GCGGCGCCTTTCGACCGGCGTTTGCGGAGGCTGGTAACAACCTCAGGTCG
TGGGCTGCCATTTCGGCCGTTTATGCCGGCTTGCAGACTGCTAGTAAGGT
GATTCGAAACAAGGATGATCGCTACAATTCCGTCATTGGCGCTTGTGGCA
GTGGTGCTACTTTTTATGTTCGTTCGGGTCCGCGCGCTGCCGCACAGGGA
TGTGTCACTTTCGCCGCGCTCAGTTATCTCATTGATGCGCTGGTAGTGCC
CAAGGAAGATCCTAACAGTGATGAAGCCATACTTAGAAAACGCTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:792282..792827+

>Ggra2567.t1 ID=Ggra2567.t1|Name=Ggra2567.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000005_pilon:792282..792827+ (Gracilaria gracilis GNS1m male)
ATGAATCGCCGATCTGCGCTCACGCCCGCGCTCTGCCCCCATCCGCGCTC
CGTGCGTCGCGTGCCGGCCTTCGCACACGCGCACGCCAACGCCGCGCCGT
CCGCGCCGCCGCTTGGGCAGCAACTCACCTTGCAGTCGCTCACGCCCACG
GAGCGCTTGCTGGAGGTGTTTCTCGCCACCTCGTCGAGTATGTTGAATGG
CGGCGTGTTCGGTGCCATCTTCGGCTTCTTCTCCGGCTTGTGGACCAATC
GCGGCGCCTTTCGACCGGCGTTTGCGGAGGCTGGTAACAACCTCAGGTCG
TGGGCTGCCATTTCGGCCGTTTATGCCGGCTTGCAGACTGCTAGTAAGGT
GATTCGAAACAAGGATGATCGCTACAATTCCGTCATTGGCGCTTGTGGCA
GTGGTGCTACTTTTTATGTTCGTTCGGGTCCGCGCGCTGCCGCACAGGGA
TGTGTCACTTTCGCCGCGCTCAGTTATCTCATTGATGCGCTGGTAGTGCC
CAAGGAAGATCCTAACAGTGATGAAGCCATACTTAGAAAACGCTAA
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