Ggra2562.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2562.t1
Unique Name	Ggra2562.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:775523..776770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2562	Ggra2562	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 775523..776770 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2562.t1.start1	Ggra2562.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 775523..775525 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2562.t1.CDS1	Ggra2562.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 775523..776770 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2562.t1.exon1	Ggra2562.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 775523..776770 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2562.t1.stop1	Ggra2562.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 776768..776770 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2562.t1	Ggra2562.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 775523..776770 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:775523..776770+
coding sequence from alignment at tig00000005_pilon:775523..776770+

mRNA sequence

>Ggra2562.t1 ID=Ggra2562.t1|Name=Ggra2562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp
MKPPKKPRKEPANLGASRSSLRIKKGRRQSANTCVVNQNHQLRGAKSDKG
EPQYVLLRGTIPDVVRWARQRMDEESADIASNSDEKEGRQAATLNPRTFA
QTITLNHRVEILLNGFASWKGETRLWENVCSFAAKLPEGGKASSIFDAMS
RYPASILVFYGLKALFGRYIVVAGRKIPRLALRQNAYSFFSPYGNEETFA
KKWFDSSTLSRMQETVTHMCAISEYIMRCVYMTKSASTDECDSETKLFSL
LEKRIREGQDHLNRRVLRFEPWDGLNELAVQHIAPCLESSMNIAHESVIE
GARLSVRIYCQKEGRGKERERIKLWMLKRPLPEIMDCLIRKLEVAVCDVL
GSRVDIDDFRLQIVRHLRRIVAIYEEVGDTWFRNDEDYHFPRDPPKRVKF
LTLSTPYTFCFSRSV*

spliced messenger RNA

>Ggra2562.t1 ID=Ggra2562.t1|Name=Ggra2562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000005_pilon:775523..776770+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCGCCGAAGAAACCAAGGAAAGAACCCGCGAACCTTGGAGCTTC
AAGATCTTCATTAAGGATAAAGAAGGGTCGAAGGCAATCAGCGAATACGT
GCGTTGTGAACCAGAATCATCAGCTGCGGGGAGCTAAGAGCGACAAGGGC
GAGCCGCAATACGTATTGCTCAGAGGAACGATTCCAGATGTAGTGCGTTG
GGCTCGACAGCGGATGGATGAGGAAAGTGCAGATATTGCTTCTAATAGCG
ACGAGAAGGAGGGTAGGCAGGCAGCTACCCTTAACCCGCGAACTTTTGCT
CAAACGATCACACTGAATCACAGAGTTGAGATATTGTTAAATGGATTTGC
TTCATGGAAAGGGGAAACCAGATTATGGGAGAACGTCTGTTCATTTGCAG
CGAAGCTTCCGGAGGGGGGTAAAGCCAGTAGTATCTTTGATGCGATGTCT
CGCTATCCTGCGTCAATTCTAGTCTTTTACGGACTGAAAGCGCTGTTTGG
GAGATATATCGTAGTCGCGGGTAGAAAGATACCACGTCTTGCTTTGCGTC
AAAACGCATATAGCTTCTTTAGTCCCTATGGAAATGAAGAAACTTTTGCG
AAGAAGTGGTTTGACTCCAGCACCCTCTCAAGAATGCAGGAGACCGTAAC
CCATATGTGCGCCATATCTGAGTATATCATGCGATGCGTTTACATGACAA
AGAGTGCGAGCACAGATGAATGCGATTCCGAGACGAAGTTGTTTTCTTTG
CTTGAGAAACGCATTCGAGAAGGACAAGATCACCTGAACAGGAGAGTTCT
GCGTTTCGAGCCCTGGGATGGCCTGAATGAGCTAGCCGTTCAGCACATAG
CCCCATGTCTGGAGTCATCGATGAACATAGCTCACGAATCTGTTATAGAA
GGCGCAAGACTCAGCGTTCGCATATATTGTCaaaaggaaggaaggggaaa
agaaagggaaaggATAAAACTATGGATGCTCAAGCGACCTCTACCTGAGA
TCATGGATTGCTTGATACGAAAGCTTGAAGTGGCTGTCTGCGACGTTTTA
GGAAGTAGGGTTGACATCGATGATTTTCGACTACAGATTGTCAGACATCT
TCGACGTATTGTAGCCATATATGAAGAAGTTGGTGATACATGGTTCCGAA
ACGATGAAGACTACCATTTTCCACGTGATCCACCAAAGAGGGTCAAATTC
CTCACTTTGTCGACACCGTATACTTTTTGTTTTTCGCGCTCTGTGTAG

protein sequence of Ggra2562.t1

>Ggra2562.t1 ID=Ggra2562.t1|Name=Ggra2562.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=416bp
MKPPKKPRKEPANLGASRSSLRIKKGRRQSANTCVVNQNHQLRGAKSDKG
EPQYVLLRGTIPDVVRWARQRMDEESADIASNSDEKEGRQAATLNPRTFA
QTITLNHRVEILLNGFASWKGETRLWENVCSFAAKLPEGGKASSIFDAMS
RYPASILVFYGLKALFGRYIVVAGRKIPRLALRQNAYSFFSPYGNEETFA
KKWFDSSTLSRMQETVTHMCAISEYIMRCVYMTKSASTDECDSETKLFSL
LEKRIREGQDHLNRRVLRFEPWDGLNELAVQHIAPCLESSMNIAHESVIE
GARLSVRIYCQKEGRGKERERIKLWMLKRPLPEIMDCLIRKLEVAVCDVL
GSRVDIDDFRLQIVRHLRRIVAIYEEVGDTWFRNDEDYHFPRDPPKRVKF
LTLSTPYTFCFSRSV*

mRNA from alignment at tig00000005_pilon:775523..776770+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2562.t1 ID=Ggra2562.t1|Name=Ggra2562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000005_pilon:775523..776770+ (Gracilaria gracilis GNS1m male)
ATGAAACCGCCGAAGAAACCAAGGAAAGAACCCGCGAACCTTGGAGCTTC
AAGATCTTCATTAAGGATAAAGAAGGGTCGAAGGCAATCAGCGAATACGT
GCGTTGTGAACCAGAATCATCAGCTGCGGGGAGCTAAGAGCGACAAGGGC
GAGCCGCAATACGTATTGCTCAGAGGAACGATTCCAGATGTAGTGCGTTG
GGCTCGACAGCGGATGGATGAGGAAAGTGCAGATATTGCTTCTAATAGCG
ACGAGAAGGAGGGTAGGCAGGCAGCTACCCTTAACCCGCGAACTTTTGCT
CAAACGATCACACTGAATCACAGAGTTGAGATATTGTTAAATGGATTTGC
TTCATGGAAAGGGGAAACCAGATTATGGGAGAACGTCTGTTCATTTGCAG
CGAAGCTTCCGGAGGGGGGTAAAGCCAGTAGTATCTTTGATGCGATGTCT
CGCTATCCTGCGTCAATTCTAGTCTTTTACGGACTGAAAGCGCTGTTTGG
GAGATATATCGTAGTCGCGGGTAGAAAGATACCACGTCTTGCTTTGCGTC
AAAACGCATATAGCTTCTTTAGTCCCTATGGAAATGAAGAAACTTTTGCG
AAGAAGTGGTTTGACTCCAGCACCCTCTCAAGAATGCAGGAGACCGTAAC
CCATATGTGCGCCATATCTGAGTATATCATGCGATGCGTTTACATGACAA
AGAGTGCGAGCACAGATGAATGCGATTCCGAGACGAAGTTGTTTTCTTTG
CTTGAGAAACGCATTCGAGAAGGACAAGATCACCTGAACAGGAGAGTTCT
GCGTTTCGAGCCCTGGGATGGCCTGAATGAGCTAGCCGTTCAGCACATAG
CCCCATGTCTGGAGTCATCGATGAACATAGCTCACGAATCTGTTATAGAA
GGCGCAAGACTCAGCGTTCGCATATATTGTCaaaaggaaggaaggggaaa
agaaagggaaaggATAAAACTATGGATGCTCAAGCGACCTCTACCTGAGA
TCATGGATTGCTTGATACGAAAGCTTGAAGTGGCTGTCTGCGACGTTTTA
GGAAGTAGGGTTGACATCGATGATTTTCGACTACAGATTGTCAGACATCT
TCGACGTATTGTAGCCATATATGAAGAAGTTGGTGATACATGGTTCCGAA
ACGATGAAGACTACCATTTTCCACGTGATCCACCAAAGAGGGTCAAATTC
CTCACTTTGTCGACACCGTATACTTTTTGTTTTTCGCGCTCTGTGTAG

Coding sequence (CDS) from alignment at tig00000005_pilon:775523..776770+

>Ggra2562.t1 ID=Ggra2562.t1|Name=Ggra2562.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00000005_pilon:775523..776770+ (Gracilaria gracilis GNS1m male)
ATGAAACCGCCGAAGAAACCAAGGAAAGAACCCGCGAACCTTGGAGCTTC
AAGATCTTCATTAAGGATAAAGAAGGGTCGAAGGCAATCAGCGAATACGT
GCGTTGTGAACCAGAATCATCAGCTGCGGGGAGCTAAGAGCGACAAGGGC
GAGCCGCAATACGTATTGCTCAGAGGAACGATTCCAGATGTAGTGCGTTG
GGCTCGACAGCGGATGGATGAGGAAAGTGCAGATATTGCTTCTAATAGCG
ACGAGAAGGAGGGTAGGCAGGCAGCTACCCTTAACCCGCGAACTTTTGCT
CAAACGATCACACTGAATCACAGAGTTGAGATATTGTTAAATGGATTTGC
TTCATGGAAAGGGGAAACCAGATTATGGGAGAACGTCTGTTCATTTGCAG
CGAAGCTTCCGGAGGGGGGTAAAGCCAGTAGTATCTTTGATGCGATGTCT
CGCTATCCTGCGTCAATTCTAGTCTTTTACGGACTGAAAGCGCTGTTTGG
GAGATATATCGTAGTCGCGGGTAGAAAGATACCACGTCTTGCTTTGCGTC
AAAACGCATATAGCTTCTTTAGTCCCTATGGAAATGAAGAAACTTTTGCG
AAGAAGTGGTTTGACTCCAGCACCCTCTCAAGAATGCAGGAGACCGTAAC
CCATATGTGCGCCATATCTGAGTATATCATGCGATGCGTTTACATGACAA
AGAGTGCGAGCACAGATGAATGCGATTCCGAGACGAAGTTGTTTTCTTTG
CTTGAGAAACGCATTCGAGAAGGACAAGATCACCTGAACAGGAGAGTTCT
GCGTTTCGAGCCCTGGGATGGCCTGAATGAGCTAGCCGTTCAGCACATAG
CCCCATGTCTGGAGTCATCGATGAACATAGCTCACGAATCTGTTATAGAA
GGCGCAAGACTCAGCGTTCGCATATATTGTCaaaaggaaggaaggggaaa
agaaagggaaaggATAAAACTATGGATGCTCAAGCGACCTCTACCTGAGA
TCATGGATTGCTTGATACGAAAGCTTGAAGTGGCTGTCTGCGACGTTTTA
GGAAGTAGGGTTGACATCGATGATTTTCGACTACAGATTGTCAGACATCT
TCGACGTATTGTAGCCATATATGAAGAAGTTGGTGATACATGGTTCCGAA
ACGATGAAGACTACCATTTTCCACGTGATCCACCAAAGAGGGTCAAATTC
CTCACTTTGTCGACACCGTATACTTTTTGTTTTTCGCGCTCTGTGTAG