Ggra2486.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2486.t1
Unique NameGgra2486.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length867
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:469065..471665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2486Ggra2486Gracilaria gracilis GNS1m malegenetig00000005_pilon 469065..471665 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2486.t1.start1Ggra2486.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 469065..469067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2486.t1.CDS1Ggra2486.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 469065..471665 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2486.t1.exon1Ggra2486.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 469065..471665 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2486.t1.stop1Ggra2486.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 471663..471665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2486.t1Ggra2486.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 469065..471665 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2486.t1 ID=Ggra2486.t1|Name=Ggra2486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp
MALPPEVATLMKALDSLQTASTPTTLASLSRTVARAADDLELVCEETVDP
SVSEQLNSYIERARQAVKTARKNARAAALKADRTALIEPPTIEQSESQST
AGTLAAEINDALRATAAVVSEEIQRSNVAGDVVEDSTRRLRMTTDQHGVY
AEGIVSGASTLKSIRRTDLMANFVLVLCFALFFVAAAYVANRRLQSSNVA
TFIVRPTYKIASMPFRITSWVFKGTINILGSQSARSQYPSSTDPQDVKIM
THKALREPRISEDRDFSVGVGDHSLREKDTHNEEPREGKRDTPYVSPTQH
FKDAIEKDIHKHSGNPPSLPRRNVIDQKIVEDSEPSAGIVDDENAVSAAS
TDLQKSDSNEQSEILLQPSPSHHCQALDDEMSATLPEHAVQETLSTESTS
PRLSEDPNDTEGTDREPFVAAGGDIATDTPQSGGQKLASKKEIEALLYPL
LSGEANPKPVEHMESTSKKIRDDEADKERSDAGSYGAEDDQERAQPELES
PSVVQEYESLLLIPLPSQEKASLSDSVTDGNGTNEPVQSSKPQAAVKKDI
EPSPPDNISDDTSETAKQNEPQAAKKGGKSSPSDNVTDGTSASETAGQTE
QQPVMEKDNEFPPLENLTGETDASETVEQNEPPHAKEKDSSFSPSENLIG
GTGPHETEEQNELNAAKKKDIEPLQSDSVTGSKGTSETVEQSEPHGLKDK
EGEPPQLHGVIGGKGTSETLEQKEQLNTKDIDDITATKETPGVSTDAKRP
KASEQHELWNSSGEKENEAPTEVQFSSLSEASESKETAIDMTATGEVGRI
SSERPGEEEHSEQLPFPASVDIESSKAGYVEGVSEERVECYLSSICLIPG
IDDLLQISAISAWINV*
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spliced messenger RNA

>Ggra2486.t1 ID=Ggra2486.t1|Name=Ggra2486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2601bp|location=Sequence derived from alignment at tig00000005_pilon:469065..471665+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTCCGCCAGAAGTAGCAACACTCATGAAGGCTCTGGACAGTCT
ACAAACTGCCTCAACACCAACTACTCTTGCTTCTTTATCACGAACCGTTG
CACGTGCGGCCGATGATCTCGAATTGGTATGCGAGGAGACTGTGGATCCG
TCCGTGTCCGAACAGCTCAATTCTTATATCGAACGAGCACGTCAGGCAGT
CAAGACTGCGCGAAAAAACGCTCGTGCTGCAGCTTTGAAAGCCGATCGCA
CCGCCCTGATTGAACCCCCAACCATTGAACAAAGTGAGTCGCAAAGCACT
GCGGGAACACTGGCTGCTGAGATCAATGACGCCTTGCGTGCGACTGCTGC
TGTAGTGAGCGAAGAGATTCAACGCTCGAATGTCGCGGGTGATGTTGTGG
AAGATTCGACAAGAAGATTAAGGATGACGACCGATCAACATGGCGTTTAC
GCCGAAGGCATTGTCTCAGGTGCATCCACGCTCAAATCAATACGAAGAAC
TGATCTTATGGCCAACTTTGTCCTGGTTCTTTGCTTTGCGCTTTTCTTTG
TCGCAGCGGCATATGTGGCCAATCGACGTTTACAGAGTAGTAATGTTGCC
ACTTTTATCGTCAGGCCTACATACAAGATCGCATCGATGCCATTTAGGAT
AACGAGCTGGGTTTTTAAAGGCACCATTAACATTCTTGGCTCTCAATCTG
CACGGTCACAATACCCGTCCTCCACTGATCCACAGGATGTCAAAATTATG
ACACACAAGGCACTACGGGAGCCTCGAATATCAGAAGATAGAGACTTCTC
TGTTGGAGTAGGAGATCACAGTTTAAGAGAAAAGGACACGCACAATGAAG
AACCGCGTGAAGGGAAGCGGGATACACCTTATGTATCACCGACTCAACAT
TTCAAGGACGCGATTGAGAAAGACATTCATAAACATTCCGGAAACCCTCC
ATCCCTCCCGAGAAGGAATGTTATTGATCAAAAGATCGTGGAAGATTCAG
AACCGTCTGCGGGTATAGTTGATGATGAAAATGCGGTGTCTGCTGCCTCG
ACTGATCTTCAGAAGTCCGACAGCAACGAGCAATCTGAAATTTTGCTGCA
ACCCTCACCCTCACATCATTGTCAAGCACTCGATGATGAAATGAGTGCGA
CTCTCCCTGAACATGCGGTTCAAGAAACGCTCAGCACGGAATCAACAAGT
CCACGGCTAAGTGAAGATCCAAATGATACTGAAGGAACAGATCGGGAGCC
TTTCGTCGCCGCCGGTGGAGACATTGCTACAGACACACCCCAGAGTGGAG
GGCAAAAGCTCGCTTCCAAAAAGGAAATTGAAGCTCTGTTGTACCCTTTG
CTATCCGGAGAAGCCAATCCCAAGCCTGTGGAACACATGGAATCAACGTC
AAAGAAAATCAGAGACGATGAAGCTGATAAAGAACGAAGTGATGCCGGGT
CATATGGCGCTGAAGATGACCAAGAACGTGCTCAACCAGAACTGGAGAGT
CCCAGCGTCGTACAGGAGTATGAATCTCTGTTATTAATCCCACTCCCATC
TCAAGAGAAAGCCTCTCTCTCTGATAGCGTGACGGACGGGAATGGTACAA
ATGAACCAGTACAGTCAAGCAAGCCACAAGCTGCGGTGAAAAAGGACATT
GAACCATCACCACCAGATAACATCAGCGACGATACCAGTGAAACAGCGAA
GCAAAACGAACCACAAGCTGCGAAGAAGGGTGGTAAATCATCGCCTTCAG
ATAATGTCACCGATGGGACGAGTGCCAGTGAAACTGCAGGCCAAACTGAG
CAACAGCCTGTTATGGAGAAGGATAATGAATTCCCGCCATTAGAAAACCT
CACCGGTGAGACAGATGCCAGCGAAACAGTAGAGCAAAACGAACCACCGC
ATGCGAAGGAGAAGGATAGTAGTTTCTCTCCATCAGAAAACCTCATCGGT
GGGACGGGCCCCCATGAAACAGAAGAGCAGAATGAGCTAAATGCTGCGAA
GAAGAAGGATATTGAACCGTTGCAATCGGATAGCGTCACCGGCAGCAAAG
GTACCAGTGAGACAGTAGAGCAGAGCGAACCACATGGTCTGAAGGACAAA
GAAGGTGAACCACCTCAGTTGCATGGGGTCATCGGCGGGAAGGGTACCAG
TGAAACATTAGAACAAAAGGAACAACTGAATACGAAAGACATTGATGACA
TAACAGCCACAAAAGAGACCCCTGGTGTTTCTACTGATGCTAAAAGGCCT
AAAGCAAGTGAGCAGCACGAATTGTGGAATTCAAGCGGGGAGAAGGAGAA
TGAAGCTCCGACGGAGGTCCAATTCTCATCACTCAGTGAAGCATCAGAAT
CAAAGGAGACAGCAATCGATATGACGGCCACGGGGGAAGTAGGACGAATC
AGCAGTGAAAGGCCAGGTGAAGAAGAGCACAGTGAGCAACTTCCATTTCC
AGCTTCTGTTGACATCGAAAGTAGTAAAGCTGGATACGTCGAAGGTGTGT
CGGAGGAACGAGTTGAATGTTATCTAAGCAGTATTTGCTTGATTCCAGGA
ATAGATGATCTACTCCAAATATCCGCCATCTCAGCCTGGATAAATGTTTA
G
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protein sequence of Ggra2486.t1

>Ggra2486.t1 ID=Ggra2486.t1|Name=Ggra2486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=867bp
MALPPEVATLMKALDSLQTASTPTTLASLSRTVARAADDLELVCEETVDP
SVSEQLNSYIERARQAVKTARKNARAAALKADRTALIEPPTIEQSESQST
AGTLAAEINDALRATAAVVSEEIQRSNVAGDVVEDSTRRLRMTTDQHGVY
AEGIVSGASTLKSIRRTDLMANFVLVLCFALFFVAAAYVANRRLQSSNVA
TFIVRPTYKIASMPFRITSWVFKGTINILGSQSARSQYPSSTDPQDVKIM
THKALREPRISEDRDFSVGVGDHSLREKDTHNEEPREGKRDTPYVSPTQH
FKDAIEKDIHKHSGNPPSLPRRNVIDQKIVEDSEPSAGIVDDENAVSAAS
TDLQKSDSNEQSEILLQPSPSHHCQALDDEMSATLPEHAVQETLSTESTS
PRLSEDPNDTEGTDREPFVAAGGDIATDTPQSGGQKLASKKEIEALLYPL
LSGEANPKPVEHMESTSKKIRDDEADKERSDAGSYGAEDDQERAQPELES
PSVVQEYESLLLIPLPSQEKASLSDSVTDGNGTNEPVQSSKPQAAVKKDI
EPSPPDNISDDTSETAKQNEPQAAKKGGKSSPSDNVTDGTSASETAGQTE
QQPVMEKDNEFPPLENLTGETDASETVEQNEPPHAKEKDSSFSPSENLIG
GTGPHETEEQNELNAAKKKDIEPLQSDSVTGSKGTSETVEQSEPHGLKDK
EGEPPQLHGVIGGKGTSETLEQKEQLNTKDIDDITATKETPGVSTDAKRP
KASEQHELWNSSGEKENEAPTEVQFSSLSEASESKETAIDMTATGEVGRI
SSERPGEEEHSEQLPFPASVDIESSKAGYVEGVSEERVECYLSSICLIPG
IDDLLQISAISAWINV*
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mRNA from alignment at tig00000005_pilon:469065..471665+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2486.t1 ID=Ggra2486.t1|Name=Ggra2486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2601bp|location=Sequence derived from alignment at tig00000005_pilon:469065..471665+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTCCGCCAGAAGTAGCAACACTCATGAAGGCTCTGGACAGTCT ACAAACTGCCTCAACACCAACTACTCTTGCTTCTTTATCACGAACCGTTG CACGTGCGGCCGATGATCTCGAATTGGTATGCGAGGAGACTGTGGATCCG TCCGTGTCCGAACAGCTCAATTCTTATATCGAACGAGCACGTCAGGCAGT CAAGACTGCGCGAAAAAACGCTCGTGCTGCAGCTTTGAAAGCCGATCGCA CCGCCCTGATTGAACCCCCAACCATTGAACAAAGTGAGTCGCAAAGCACT GCGGGAACACTGGCTGCTGAGATCAATGACGCCTTGCGTGCGACTGCTGC TGTAGTGAGCGAAGAGATTCAACGCTCGAATGTCGCGGGTGATGTTGTGG AAGATTCGACAAGAAGATTAAGGATGACGACCGATCAACATGGCGTTTAC GCCGAAGGCATTGTCTCAGGTGCATCCACGCTCAAATCAATACGAAGAAC TGATCTTATGGCCAACTTTGTCCTGGTTCTTTGCTTTGCGCTTTTCTTTG TCGCAGCGGCATATGTGGCCAATCGACGTTTACAGAGTAGTAATGTTGCC ACTTTTATCGTCAGGCCTACATACAAGATCGCATCGATGCCATTTAGGAT AACGAGCTGGGTTTTTAAAGGCACCATTAACATTCTTGGCTCTCAATCTG CACGGTCACAATACCCGTCCTCCACTGATCCACAGGATGTCAAAATTATG ACACACAAGGCACTACGGGAGCCTCGAATATCAGAAGATAGAGACTTCTC TGTTGGAGTAGGAGATCACAGTTTAAGAGAAAAGGACACGCACAATGAAG AACCGCGTGAAGGGAAGCGGGATACACCTTATGTATCACCGACTCAACAT TTCAAGGACGCGATTGAGAAAGACATTCATAAACATTCCGGAAACCCTCC ATCCCTCCCGAGAAGGAATGTTATTGATCAAAAGATCGTGGAAGATTCAG AACCGTCTGCGGGTATAGTTGATGATGAAAATGCGGTGTCTGCTGCCTCG ACTGATCTTCAGAAGTCCGACAGCAACGAGCAATCTGAAATTTTGCTGCA ACCCTCACCCTCACATCATTGTCAAGCACTCGATGATGAAATGAGTGCGA CTCTCCCTGAACATGCGGTTCAAGAAACGCTCAGCACGGAATCAACAAGT CCACGGCTAAGTGAAGATCCAAATGATACTGAAGGAACAGATCGGGAGCC TTTCGTCGCCGCCGGTGGAGACATTGCTACAGACACACCCCAGAGTGGAG GGCAAAAGCTCGCTTCCAAAAAGGAAATTGAAGCTCTGTTGTACCCTTTG CTATCCGGAGAAGCCAATCCCAAGCCTGTGGAACACATGGAATCAACGTC AAAGAAAATCAGAGACGATGAAGCTGATAAAGAACGAAGTGATGCCGGGT CATATGGCGCTGAAGATGACCAAGAACGTGCTCAACCAGAACTGGAGAGT CCCAGCGTCGTACAGGAGTATGAATCTCTGTTATTAATCCCACTCCCATC TCAAGAGAAAGCCTCTCTCTCTGATAGCGTGACGGACGGGAATGGTACAA ATGAACCAGTACAGTCAAGCAAGCCACAAGCTGCGGTGAAAAAGGACATT GAACCATCACCACCAGATAACATCAGCGACGATACCAGTGAAACAGCGAA GCAAAACGAACCACAAGCTGCGAAGAAGGGTGGTAAATCATCGCCTTCAG ATAATGTCACCGATGGGACGAGTGCCAGTGAAACTGCAGGCCAAACTGAG CAACAGCCTGTTATGGAGAAGGATAATGAATTCCCGCCATTAGAAAACCT CACCGGTGAGACAGATGCCAGCGAAACAGTAGAGCAAAACGAACCACCGC ATGCGAAGGAGAAGGATAGTAGTTTCTCTCCATCAGAAAACCTCATCGGT GGGACGGGCCCCCATGAAACAGAAGAGCAGAATGAGCTAAATGCTGCGAA GAAGAAGGATATTGAACCGTTGCAATCGGATAGCGTCACCGGCAGCAAAG GTACCAGTGAGACAGTAGAGCAGAGCGAACCACATGGTCTGAAGGACAAA GAAGGTGAACCACCTCAGTTGCATGGGGTCATCGGCGGGAAGGGTACCAG TGAAACATTAGAACAAAAGGAACAACTGAATACGAAAGACATTGATGACA TAACAGCCACAAAAGAGACCCCTGGTGTTTCTACTGATGCTAAAAGGCCT AAAGCAAGTGAGCAGCACGAATTGTGGAATTCAAGCGGGGAGAAGGAGAA TGAAGCTCCGACGGAGGTCCAATTCTCATCACTCAGTGAAGCATCAGAAT CAAAGGAGACAGCAATCGATATGACGGCCACGGGGGAAGTAGGACGAATC AGCAGTGAAAGGCCAGGTGAAGAAGAGCACAGTGAGCAACTTCCATTTCC AGCTTCTGTTGACATCGAAAGTAGTAAAGCTGGATACGTCGAAGGTGTGT CGGAGGAACGAGTTGAATGTTATCTAAGCAGTATTTGCTTGATTCCAGGA ATAGATGATCTACTCCAAATATCCGCCATCTCAGCCTGGATAAATGTTTA G
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Coding sequence (CDS) from alignment at tig00000005_pilon:469065..471665+

>Ggra2486.t1 ID=Ggra2486.t1|Name=Ggra2486.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2601bp|location=Sequence derived from alignment at tig00000005_pilon:469065..471665+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTCCGCCAGAAGTAGCAACACTCATGAAGGCTCTGGACAGTCT
ACAAACTGCCTCAACACCAACTACTCTTGCTTCTTTATCACGAACCGTTG
CACGTGCGGCCGATGATCTCGAATTGGTATGCGAGGAGACTGTGGATCCG
TCCGTGTCCGAACAGCTCAATTCTTATATCGAACGAGCACGTCAGGCAGT
CAAGACTGCGCGAAAAAACGCTCGTGCTGCAGCTTTGAAAGCCGATCGCA
CCGCCCTGATTGAACCCCCAACCATTGAACAAAGTGAGTCGCAAAGCACT
GCGGGAACACTGGCTGCTGAGATCAATGACGCCTTGCGTGCGACTGCTGC
TGTAGTGAGCGAAGAGATTCAACGCTCGAATGTCGCGGGTGATGTTGTGG
AAGATTCGACAAGAAGATTAAGGATGACGACCGATCAACATGGCGTTTAC
GCCGAAGGCATTGTCTCAGGTGCATCCACGCTCAAATCAATACGAAGAAC
TGATCTTATGGCCAACTTTGTCCTGGTTCTTTGCTTTGCGCTTTTCTTTG
TCGCAGCGGCATATGTGGCCAATCGACGTTTACAGAGTAGTAATGTTGCC
ACTTTTATCGTCAGGCCTACATACAAGATCGCATCGATGCCATTTAGGAT
AACGAGCTGGGTTTTTAAAGGCACCATTAACATTCTTGGCTCTCAATCTG
CACGGTCACAATACCCGTCCTCCACTGATCCACAGGATGTCAAAATTATG
ACACACAAGGCACTACGGGAGCCTCGAATATCAGAAGATAGAGACTTCTC
TGTTGGAGTAGGAGATCACAGTTTAAGAGAAAAGGACACGCACAATGAAG
AACCGCGTGAAGGGAAGCGGGATACACCTTATGTATCACCGACTCAACAT
TTCAAGGACGCGATTGAGAAAGACATTCATAAACATTCCGGAAACCCTCC
ATCCCTCCCGAGAAGGAATGTTATTGATCAAAAGATCGTGGAAGATTCAG
AACCGTCTGCGGGTATAGTTGATGATGAAAATGCGGTGTCTGCTGCCTCG
ACTGATCTTCAGAAGTCCGACAGCAACGAGCAATCTGAAATTTTGCTGCA
ACCCTCACCCTCACATCATTGTCAAGCACTCGATGATGAAATGAGTGCGA
CTCTCCCTGAACATGCGGTTCAAGAAACGCTCAGCACGGAATCAACAAGT
CCACGGCTAAGTGAAGATCCAAATGATACTGAAGGAACAGATCGGGAGCC
TTTCGTCGCCGCCGGTGGAGACATTGCTACAGACACACCCCAGAGTGGAG
GGCAAAAGCTCGCTTCCAAAAAGGAAATTGAAGCTCTGTTGTACCCTTTG
CTATCCGGAGAAGCCAATCCCAAGCCTGTGGAACACATGGAATCAACGTC
AAAGAAAATCAGAGACGATGAAGCTGATAAAGAACGAAGTGATGCCGGGT
CATATGGCGCTGAAGATGACCAAGAACGTGCTCAACCAGAACTGGAGAGT
CCCAGCGTCGTACAGGAGTATGAATCTCTGTTATTAATCCCACTCCCATC
TCAAGAGAAAGCCTCTCTCTCTGATAGCGTGACGGACGGGAATGGTACAA
ATGAACCAGTACAGTCAAGCAAGCCACAAGCTGCGGTGAAAAAGGACATT
GAACCATCACCACCAGATAACATCAGCGACGATACCAGTGAAACAGCGAA
GCAAAACGAACCACAAGCTGCGAAGAAGGGTGGTAAATCATCGCCTTCAG
ATAATGTCACCGATGGGACGAGTGCCAGTGAAACTGCAGGCCAAACTGAG
CAACAGCCTGTTATGGAGAAGGATAATGAATTCCCGCCATTAGAAAACCT
CACCGGTGAGACAGATGCCAGCGAAACAGTAGAGCAAAACGAACCACCGC
ATGCGAAGGAGAAGGATAGTAGTTTCTCTCCATCAGAAAACCTCATCGGT
GGGACGGGCCCCCATGAAACAGAAGAGCAGAATGAGCTAAATGCTGCGAA
GAAGAAGGATATTGAACCGTTGCAATCGGATAGCGTCACCGGCAGCAAAG
GTACCAGTGAGACAGTAGAGCAGAGCGAACCACATGGTCTGAAGGACAAA
GAAGGTGAACCACCTCAGTTGCATGGGGTCATCGGCGGGAAGGGTACCAG
TGAAACATTAGAACAAAAGGAACAACTGAATACGAAAGACATTGATGACA
TAACAGCCACAAAAGAGACCCCTGGTGTTTCTACTGATGCTAAAAGGCCT
AAAGCAAGTGAGCAGCACGAATTGTGGAATTCAAGCGGGGAGAAGGAGAA
TGAAGCTCCGACGGAGGTCCAATTCTCATCACTCAGTGAAGCATCAGAAT
CAAAGGAGACAGCAATCGATATGACGGCCACGGGGGAAGTAGGACGAATC
AGCAGTGAAAGGCCAGGTGAAGAAGAGCACAGTGAGCAACTTCCATTTCC
AGCTTCTGTTGACATCGAAAGTAGTAAAGCTGGATACGTCGAAGGTGTGT
CGGAGGAACGAGTTGAATGTTATCTAAGCAGTATTTGCTTGATTCCAGGA
ATAGATGATCTACTCCAAATATCCGCCATCTCAGCCTGGATAAATGTTTA
G
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