Ggra2465.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2465.t1
Unique NameGgra2465.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:399077..399676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173028.ANKO01000080_gene4664
PFAMsSnoaL_2
Max annot lvl1117|Cyanobacteria
Evalue3.75e-42
EggNOG OGsKOG0667@1|root,2ZACK@2|Bacteria,1G39X@1117|Cyanobacteria,1H9UE@1150|Oscillatoriales
Descriptionprotein kinase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2465Ggra2465Gracilaria gracilis GNS1m malegenetig00000005_pilon 399077..399676 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2465.t1.start1Ggra2465.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 399077..399079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2465.t1.CDS1Ggra2465.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 399077..399676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2465.t1.exon1Ggra2465.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 399077..399676 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2465.t1.stop1Ggra2465.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 399674..399676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2465.t1Ggra2465.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 399077..399676 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2465.t1 ID=Ggra2465.t1|Name=Ggra2465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MAPVIHPILEGLFNLVVAWALLLLGFTSEDNPPRTRPPSAALFFAGTAFL
TNIVYLPYLIFRQKPTSEARSPTTALESFGESIYLPVFCTALTLISAAWA
LWARSEYGDIQTRIASFKNILFSDILAYSFGVDLIVFSLFQSWLVRDDAN
RRKWKHDSIKAVAVNATAIPFFGLAYYLFQRARHTSYSKQEQTSASKTK*
back to top

spliced messenger RNA

>Ggra2465.t1 ID=Ggra2465.t1|Name=Ggra2465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000005_pilon:399077..399676+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGGTCATACACCCCATTCTCGAAGGCTTGTTCAATCTTGTCGT
TGCCTGGGCTCTTCTTCTACTTGGCTTCACGTCCGAAGACAATCCACCCA
GAACAAGACCGCCGTCCGCCGCCTTATTCTTCGCCGGCACAGCATTTTTG
ACCAACATTGTATACCTTCCATACCTCATCTTCCGACAAAAGCCCACCAG
TGAAGCACGAAGCCCAACAACTGCGCTTGAGAGTTTTGGTGAGTCTATCT
ATCTCCCTGTGTTCTGCACAGCCTTGACATTAATTTCTGCTGCATGGGCA
CTTTGGGCACGCTCCGAGTATGGCGATATTCAAACGCGAATCGCGTCGTT
CAAGAACATTCTCTTCTCCGACATTCTGGCGTATTCGTTCGGAGTTGATT
TAATTGTATTCTCCCTCTTCCAATCATGGCTCGTACGAGACGATGCCAAT
CGACGCAAATGGAAGCACGATTCGATCAAGGCAGTAGCAGTCAACGCCAC
AGCAATACCATTCTTCGGCTTGGCATACTACCTGTTTCAGCGTGCAAGAC
ATACGAGCTACAGCAAACAAGAGCAAACGAGCGCAAGCAAAACAAAATAA
back to top

protein sequence of Ggra2465.t1

>Ggra2465.t1 ID=Ggra2465.t1|Name=Ggra2465.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MAPVIHPILEGLFNLVVAWALLLLGFTSEDNPPRTRPPSAALFFAGTAFL
TNIVYLPYLIFRQKPTSEARSPTTALESFGESIYLPVFCTALTLISAAWA
LWARSEYGDIQTRIASFKNILFSDILAYSFGVDLIVFSLFQSWLVRDDAN
RRKWKHDSIKAVAVNATAIPFFGLAYYLFQRARHTSYSKQEQTSASKTK*
back to top

mRNA from alignment at tig00000005_pilon:399077..399676+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2465.t1 ID=Ggra2465.t1|Name=Ggra2465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000005_pilon:399077..399676+ (Gracilaria gracilis GNS1m male)
ATGGCTCCGGTCATACACCCCATTCTCGAAGGCTTGTTCAATCTTGTCGT
TGCCTGGGCTCTTCTTCTACTTGGCTTCACGTCCGAAGACAATCCACCCA
GAACAAGACCGCCGTCCGCCGCCTTATTCTTCGCCGGCACAGCATTTTTG
ACCAACATTGTATACCTTCCATACCTCATCTTCCGACAAAAGCCCACCAG
TGAAGCACGAAGCCCAACAACTGCGCTTGAGAGTTTTGGTGAGTCTATCT
ATCTCCCTGTGTTCTGCACAGCCTTGACATTAATTTCTGCTGCATGGGCA
CTTTGGGCACGCTCCGAGTATGGCGATATTCAAACGCGAATCGCGTCGTT
CAAGAACATTCTCTTCTCCGACATTCTGGCGTATTCGTTCGGAGTTGATT
TAATTGTATTCTCCCTCTTCCAATCATGGCTCGTACGAGACGATGCCAAT
CGACGCAAATGGAAGCACGATTCGATCAAGGCAGTAGCAGTCAACGCCAC
AGCAATACCATTCTTCGGCTTGGCATACTACCTGTTTCAGCGTGCAAGAC
ATACGAGCTACAGCAAACAAGAGCAAACGAGCGCAAGCAAAACAAAATAA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:399077..399676+

>Ggra2465.t1 ID=Ggra2465.t1|Name=Ggra2465.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000005_pilon:399077..399676+ (Gracilaria gracilis GNS1m male)
ATGGCTCCGGTCATACACCCCATTCTCGAAGGCTTGTTCAATCTTGTCGT
TGCCTGGGCTCTTCTTCTACTTGGCTTCACGTCCGAAGACAATCCACCCA
GAACAAGACCGCCGTCCGCCGCCTTATTCTTCGCCGGCACAGCATTTTTG
ACCAACATTGTATACCTTCCATACCTCATCTTCCGACAAAAGCCCACCAG
TGAAGCACGAAGCCCAACAACTGCGCTTGAGAGTTTTGGTGAGTCTATCT
ATCTCCCTGTGTTCTGCACAGCCTTGACATTAATTTCTGCTGCATGGGCA
CTTTGGGCACGCTCCGAGTATGGCGATATTCAAACGCGAATCGCGTCGTT
CAAGAACATTCTCTTCTCCGACATTCTGGCGTATTCGTTCGGAGTTGATT
TAATTGTATTCTCCCTCTTCCAATCATGGCTCGTACGAGACGATGCCAAT
CGACGCAAATGGAAGCACGATTCGATCAAGGCAGTAGCAGTCAACGCCAC
AGCAATACCATTCTTCGGCTTGGCATACTACCTGTTTCAGCGTGCAAGAC
ATACGAGCTACAGCAAACAAGAGCAAACGAGCGCAAGCAAAACAAAATAA
back to top