Ggra2464.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2464.t1
Unique NameGgra2464.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:397101..398336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO314CT
Preferred nameSORCS2
PFAMsLdl_recept_a,Ldl_recept_b,PKD,PSII_BNR,Sortilin-Vps10,Sortilin_C,fn3
Max annot lvl2759|Eukaryota
KEGG koko:K02966,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03010,ko04142,ko04722,ko04979,map03010,map04142,map04722,map04979
KEGG ModuleM00177,M00179
GOsGO:0000139,GO:0001540,GO:0001653,GO:0001932,GO:0001933,GO:0003008,GO:0003674,GO:0004888,GO:0004930,GO:0005030,GO:0005041,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005641,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005771,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005887,GO:0005905,GO:0006469,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006915,GO:0006928,GO:0006996,GO:0007034,GO:0007041,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007186,GO:0007218,GO:0007275,GO:0007399,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0008104,GO:0008150,GO:0008152,GO:0008188,GO:0008219,GO:0008333,GO:0008528,GO:0008625,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009941,GO:0009966,GO:0009968,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010465,GO:0010466,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010648,GO:0010721,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0012506,GO:0014069,GO:0014902,GO:0014910,GO:0015031,GO:0015749,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0016492,GO:0019220,GO:0019222,GO:0019538,GO:0019838,GO:0019899,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0030162,GO:0030169,GO:0030228,GO:0030306,GO:0030334,GO:0030379,GO:0030425,GO:0030659,GO:0031090,GO:0031224,GO:0031226,GO:0031267,GO:0031323,GO:0031324,GO:0031333,GO:0031399,GO:0031400,GO:0031410,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031976,GO:0031977,GO:0031982,GO:0031984,GO:0031985,GO:0032091,GO:0032268,GO:0032269,GO:0032279,GO:0032386,GO:0032388,GO:0032459,GO:0032460,GO:0032501,GO:0032502,GO:0032507,GO:0032509,GO:0032868,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0033673,GO:0034067,GO:0034219,GO:0034248,GO:0034249,GO:0034357,GO:0034613,GO:0036477,GO:0038023,GO:0038024,GO:0038179,GO:0038180,GO:0040011,GO:0040012,GO:0042176,GO:0042221,GO:0042277,GO:0042325,GO:0042326,GO:0042651,GO:0042692,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043086,GO:0043121,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043393,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043434,GO:0043549,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044434,GO:0044435,GO:0044436,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045053,GO:0045184,GO:0045185,GO:0045202,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045732,GO:0045859,GO:0045861,GO:0045936,GO:0046323,GO:0046686,GO:0046907,GO:0048011,GO:0048167,GO:0048193,GO:0048227,GO:0048406,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051004,GO:0051005,GO:0051020,GO:0051049,GO:0051050,GO:0051093,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051235,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051336,GO:0051338,GO:0051346,GO:0051347,GO:0051348,GO:0051604,GO:0051641,GO:0051649,GO:0051651,GO:0051674,GO:0051716,GO:0051960,GO:0051961,GO:0052547,GO:0052548,GO:0055035,GO:0055037,GO:0055085,GO:0060089,GO:0060191,GO:0060192,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0060627,GO:0060628,GO:0061061,GO:0061462,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070727,GO:0070848,GO:0070861,GO:0070863,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071813,GO:0071814,GO:0071840,GO:0071900,GO:0071901,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090083,GO:0090084,GO:0090087,GO:0090316,GO:0097190,GO:0097191,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098794,GO:0098805,GO:0098984,GO:0099177,GO:0099572,GO:0120025,GO:0120038,GO:1900452,GO:1901214,GO:1901215,GO:1901564,GO:1901652,GO:1901698,GO:1901700,GO:1902003,GO:1902430,GO:1902531,GO:1902532,GO:1902769,GO:1902771,GO:1902947,GO:1902948,GO:1902953,GO:1902954,GO:1902955,GO:1902959,GO:1902960,GO:1902962,GO:1902963,GO:1902965,GO:1902966,GO:1902991,GO:1902992,GO:1902996,GO:1902997,GO:1903649,GO:1903651,GO:1903827,GO:1903829,GO:1904035,GO:1904037,GO:1904659,GO:1904683,GO:1904684,GO:1904951,GO:1905048,GO:1905049,GO:1905245,GO:1905246,GO:1905666,GO:1905668,GO:1990089,GO:1990090,GO:2000026,GO:2000145,GO:2001135,GO:2001137
Evalue7.52e-139
EggNOG OGsKOG3511@1|root,KOG3511@2759|Eukaryota
Descriptionprotein transport
COG categoryU
BRITEbr01610,ko00000,ko00001,ko00002,ko02000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2464Ggra2464Gracilaria gracilis GNS1m malegenetig00000005_pilon 397101..398336 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2464.t1.stop1Ggra2464.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 397101..397103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2464.t1.CDS1Ggra2464.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 397101..398336 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2464.t1.exon1Ggra2464.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 397101..398336 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2464.t1.start1Ggra2464.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 398334..398336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2464.t1Ggra2464.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 397101..398336 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2464.t1 ID=Ggra2464.t1|Name=Ggra2464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MSPHLFFIASAPLRVTTFTPRSHATARRRDAARTQMSFSVDQPDSSFKLH
RRSFLSAAALAALQLPAAASKAERVLTPPAWTQVELDSGETIYDIDFSPV
DPSHGFLVGSRGTVAETFDRGVTWQPRTFARLDADEELNYRFEVVTFRGQ
EGWVIGKPSLLLHTSDSGKSWERVPLSPKLPGEPVAITALGPQKAEMTTN
AGAVYVTENSGRNWKAQVRETIDATLNRTISSGVTGASYFTGSIIQVLRD
AYGAYLAISSRGNFFLTWKPGQDFWIPHARDSSRRIQSMGFVNNDVNDGV
WMATRGGGLSFTEKNPELESTELLKFNKVDIRSGGYGILDVAFRPDTSEV
WAAIGGGTLYRSEDGGRSWKRDDKTGKVGANIYRIKFFGKDTAFALGSNG
VVLRYNPEATA*
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spliced messenger RNA

>Ggra2464.t1 ID=Ggra2464.t1|Name=Ggra2464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000005_pilon:397101..398336- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGCACCTCTTCTTCATCGCGTCCGCCCCATTGCGCGTCACGAC
CTTCACACCGCGCTCGCACGCCACCGCACGACGTCGCGATGCGGCGCGTA
CGCAAATGTCCTTTTCTGTCGATCAGCCCGACTCTTCGTTCAAATTGCAT
CGCCGCTCATTTCTTTCTGCCGCCGCTCTGGCGGCTCTACAACTTCCCGC
CGCCGCCTCAAAGGCGGAACGAGTGTTGACGCCGCCCGCATGGACGCAGG
TCGAGCTAGATTCCGGCGAGACCATATACGACATTGACTTTTCCCCCGTC
GATCCTTCGCACGGCTTTCTGGTCGGCTCTCGCGGCACGGTCGCTGAGAC
GTTTGATCGCGGCGTTACATGGCAGCCGAGAACCTTTGCTCGCTTGGACG
CCGATGAGGAGCTCAACTATCGCTTCGAGGTGGTCACCTTTAGAGGACAG
GAAGGCTGGGTTATTGGAAAGCCTTCCCTTTTACTTCACACCTCGGACTC
TGGAAAGTCTTGGGAACGAGTACCGTTGAGCCCCAAGCTACCGGGAGAGC
CAGTTGCTATCACCGCCCTTGGTCCACAAAAAGCTGAAATGACCACCAAT
GCGGGCGCCGTGTACGTCACCGAGAACAGCGGTCGAAACTGGAAGGCTCA
AGTTCGCGAGACAATCGATGCCACCCTGAATCGTACCATCTCTTCCGGAG
TCACGGGTGCATCGTACTTTACTGGCTCAATCATCCAGGTACTGAGGGAC
GCGTACGGCGCATATCTTGCCATTTCATCGCGAGGAAATTTCTTCCTGAC
TTGGAAGCCGGGTCAGGACTTTTGGATCCCACATGCGAGGGATTCTTCGA
GACGTATTCAGTCAATGGGTTTTGTCAACAATGACGTGAATGACGGAGTT
TGGATGGCCACACGTGGGGGTGGACTGTCGTTCACAGAAAAGAATCCTGA
ACTTGAAAGCACAGAATTACTCAAGTTCAATAAGGTGGATATTCGTTCTG
GCGGTTATGGAATCCTGGACGTTGCCTTCAGGCCTGATACGTCGGAAGTG
TGGGCTGCGATTGGAGGCGGAACGCTGTATCGTTCGGAAGATGGAGGCAG
ATCTTGGAAACGGGATGACAAGACGGGCAAAGTGGGAGCAAACATTTATC
GAATCAAGTTCTTCGGCAAGGACACCGCCTTCGCGCTGGGCTCTAATGGG
GTTGTTTTGCGGTATAATCCTGAAGCCACTGCGTAA
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protein sequence of Ggra2464.t1

>Ggra2464.t1 ID=Ggra2464.t1|Name=Ggra2464.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MSPHLFFIASAPLRVTTFTPRSHATARRRDAARTQMSFSVDQPDSSFKLH
RRSFLSAAALAALQLPAAASKAERVLTPPAWTQVELDSGETIYDIDFSPV
DPSHGFLVGSRGTVAETFDRGVTWQPRTFARLDADEELNYRFEVVTFRGQ
EGWVIGKPSLLLHTSDSGKSWERVPLSPKLPGEPVAITALGPQKAEMTTN
AGAVYVTENSGRNWKAQVRETIDATLNRTISSGVTGASYFTGSIIQVLRD
AYGAYLAISSRGNFFLTWKPGQDFWIPHARDSSRRIQSMGFVNNDVNDGV
WMATRGGGLSFTEKNPELESTELLKFNKVDIRSGGYGILDVAFRPDTSEV
WAAIGGGTLYRSEDGGRSWKRDDKTGKVGANIYRIKFFGKDTAFALGSNG
VVLRYNPEATA*
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mRNA from alignment at tig00000005_pilon:397101..398336-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2464.t1 ID=Ggra2464.t1|Name=Ggra2464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000005_pilon:397101..398336- (Gracilaria gracilis GNS1m male)
ATGTCGCCGCACCTCTTCTTCATCGCGTCCGCCCCATTGCGCGTCACGAC
CTTCACACCGCGCTCGCACGCCACCGCACGACGTCGCGATGCGGCGCGTA
CGCAAATGTCCTTTTCTGTCGATCAGCCCGACTCTTCGTTCAAATTGCAT
CGCCGCTCATTTCTTTCTGCCGCCGCTCTGGCGGCTCTACAACTTCCCGC
CGCCGCCTCAAAGGCGGAACGAGTGTTGACGCCGCCCGCATGGACGCAGG
TCGAGCTAGATTCCGGCGAGACCATATACGACATTGACTTTTCCCCCGTC
GATCCTTCGCACGGCTTTCTGGTCGGCTCTCGCGGCACGGTCGCTGAGAC
GTTTGATCGCGGCGTTACATGGCAGCCGAGAACCTTTGCTCGCTTGGACG
CCGATGAGGAGCTCAACTATCGCTTCGAGGTGGTCACCTTTAGAGGACAG
GAAGGCTGGGTTATTGGAAAGCCTTCCCTTTTACTTCACACCTCGGACTC
TGGAAAGTCTTGGGAACGAGTACCGTTGAGCCCCAAGCTACCGGGAGAGC
CAGTTGCTATCACCGCCCTTGGTCCACAAAAAGCTGAAATGACCACCAAT
GCGGGCGCCGTGTACGTCACCGAGAACAGCGGTCGAAACTGGAAGGCTCA
AGTTCGCGAGACAATCGATGCCACCCTGAATCGTACCATCTCTTCCGGAG
TCACGGGTGCATCGTACTTTACTGGCTCAATCATCCAGGTACTGAGGGAC
GCGTACGGCGCATATCTTGCCATTTCATCGCGAGGAAATTTCTTCCTGAC
TTGGAAGCCGGGTCAGGACTTTTGGATCCCACATGCGAGGGATTCTTCGA
GACGTATTCAGTCAATGGGTTTTGTCAACAATGACGTGAATGACGGAGTT
TGGATGGCCACACGTGGGGGTGGACTGTCGTTCACAGAAAAGAATCCTGA
ACTTGAAAGCACAGAATTACTCAAGTTCAATAAGGTGGATATTCGTTCTG
GCGGTTATGGAATCCTGGACGTTGCCTTCAGGCCTGATACGTCGGAAGTG
TGGGCTGCGATTGGAGGCGGAACGCTGTATCGTTCGGAAGATGGAGGCAG
ATCTTGGAAACGGGATGACAAGACGGGCAAAGTGGGAGCAAACATTTATC
GAATCAAGTTCTTCGGCAAGGACACCGCCTTCGCGCTGGGCTCTAATGGG
GTTGTTTTGCGGTATAATCCTGAAGCCACTGCGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:397101..398336-

>Ggra2464.t1 ID=Ggra2464.t1|Name=Ggra2464.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000005_pilon:397101..398336- (Gracilaria gracilis GNS1m male)
ATGTCGCCGCACCTCTTCTTCATCGCGTCCGCCCCATTGCGCGTCACGAC
CTTCACACCGCGCTCGCACGCCACCGCACGACGTCGCGATGCGGCGCGTA
CGCAAATGTCCTTTTCTGTCGATCAGCCCGACTCTTCGTTCAAATTGCAT
CGCCGCTCATTTCTTTCTGCCGCCGCTCTGGCGGCTCTACAACTTCCCGC
CGCCGCCTCAAAGGCGGAACGAGTGTTGACGCCGCCCGCATGGACGCAGG
TCGAGCTAGATTCCGGCGAGACCATATACGACATTGACTTTTCCCCCGTC
GATCCTTCGCACGGCTTTCTGGTCGGCTCTCGCGGCACGGTCGCTGAGAC
GTTTGATCGCGGCGTTACATGGCAGCCGAGAACCTTTGCTCGCTTGGACG
CCGATGAGGAGCTCAACTATCGCTTCGAGGTGGTCACCTTTAGAGGACAG
GAAGGCTGGGTTATTGGAAAGCCTTCCCTTTTACTTCACACCTCGGACTC
TGGAAAGTCTTGGGAACGAGTACCGTTGAGCCCCAAGCTACCGGGAGAGC
CAGTTGCTATCACCGCCCTTGGTCCACAAAAAGCTGAAATGACCACCAAT
GCGGGCGCCGTGTACGTCACCGAGAACAGCGGTCGAAACTGGAAGGCTCA
AGTTCGCGAGACAATCGATGCCACCCTGAATCGTACCATCTCTTCCGGAG
TCACGGGTGCATCGTACTTTACTGGCTCAATCATCCAGGTACTGAGGGAC
GCGTACGGCGCATATCTTGCCATTTCATCGCGAGGAAATTTCTTCCTGAC
TTGGAAGCCGGGTCAGGACTTTTGGATCCCACATGCGAGGGATTCTTCGA
GACGTATTCAGTCAATGGGTTTTGTCAACAATGACGTGAATGACGGAGTT
TGGATGGCCACACGTGGGGGTGGACTGTCGTTCACAGAAAAGAATCCTGA
ACTTGAAAGCACAGAATTACTCAAGTTCAATAAGGTGGATATTCGTTCTG
GCGGTTATGGAATCCTGGACGTTGCCTTCAGGCCTGATACGTCGGAAGTG
TGGGCTGCGATTGGAGGCGGAACGCTGTATCGTTCGGAAGATGGAGGCAG
ATCTTGGAAACGGGATGACAAGACGGGCAAAGTGGGAGCAAACATTTATC
GAATCAAGTTCTTCGGCAAGGACACCGCCTTCGCGCTGGGCTCTAATGGG
GTTGTTTTGCGGTATAATCCTGAAGCCACTGCGTAA
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