Ggra24.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra24.t1
Unique NameGgra24.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000949_piloncontigtig00000949_pilon:16433..17998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002503764.1
PFAMsACT_6,UPF0126
Max annot lvl2759|Eukaryota
Evalue4.48e-42
EggNOG OGs2B6TB@1|root,2S0MY@2759|Eukaryota
DescriptionUPF0126 domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra24Ggra24Gracilaria gracilis GNS1m malegenetig00000949_pilon 16433..17998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra24.t1Ggra24.t1Gracilaria gracilis GNS1m malepolypeptidetig00000949_pilon 16433..17998 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra24.t1.start1Ggra24.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000949_pilon 16433..16435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra24.t1.CDS1Ggra24.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000949_pilon 16433..16942 +
Ggra24.t1.CDS2Ggra24.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000949_pilon 17114..17366 +
Ggra24.t1.CDS3Ggra24.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000949_pilon 17460..17998 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra24.t1.exon1Ggra24.t1.exon1Gracilaria gracilis GNS1m maleexontig00000949_pilon 16433..16942 +
Ggra24.t1.exon2Ggra24.t1.exon2Gracilaria gracilis GNS1m maleexontig00000949_pilon 17114..17366 +
Ggra24.t1.exon3Ggra24.t1.exon3Gracilaria gracilis GNS1m maleexontig00000949_pilon 17460..17998 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra24.t1.intron1Ggra24.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000949_pilon 16943..17113 +
Ggra24.t1.intron2Ggra24.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000949_pilon 17367..17459 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra24.t1.stop1Ggra24.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000949_pilon 17996..17998 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra24.t1 ID=Ggra24.t1|Name=Ggra24.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MVGTITAVGGGTIRDAVILAKRLFWTEEVEYLYLCIATAASTFALYAACA
PRAAREESAVEFVADTIGVGAFCVIGAMNGVRARVPIAVVVFCDMATATF
GGVVRDMLCSRKVRIMHSAAEIYATTAAAGAATYVATAAGGASVPARVGA
GVGVAVALRTWAWLEGVWLASSSSAVAMDDENSPPLRPPARPQSPLLLPS
ERVPLAPPHIDHNASTPSAYESPTPPTSPSTDYPYGAVARVVPPSPDADG
YRERPQRESIQRRRQRIADTTILGIAIFVVTGVVFLVMATGFTAMVTNEN
SPRLQIFSAWPDGGVIPLEYGCHASDGVPISIPLRWEDVPPSATNLVILF
SHPGALNESKVDPVHWFVTNIPLGPDHDNHMPPNASTNPALLPHGAVERA
NVYSHGGYYWPPCSKTTSLFTIHVYAVEAPAVI*
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spliced messenger RNA

>Ggra24.t1 ID=Ggra24.t1|Name=Ggra24.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000949_pilon:16433..17998+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGTACCATCACCGCCGTTGGCGGCGGCACCATTCGCGACGCCGT
CATTCTTGCAAAGCGTCTGTTCTGGACGGAAGAGGTGGAATACCTCTACC
TGTGCATCGCCACGGCCGCCTCCACCTTcgcgctgtacgcagcgtgcgcg
ccgcgcgccgcgcgcgAGGAGAGCGCCGTGGAGTTCGTGGCTGACACCAT
CGGCGTGGGTGCGTTTTGCGTCATTGGCGCCATGAACGGCGTGAGAGCGC
GAGTACCAATCGCAGTCGTCGTTTTTTGCGACATGGCAACCGCCACCTTT
GGCGGCGTCGTCAGAGACATGCTCTGCAGCAGAAAGGTGCGTATTATGCA
CTCGGCTGCCGAGATCTAcgccaccaccgccgccgccggcgctgccacgt
acgtcgccaccgccgcgggcggcgcTTCTGTGCCCGCGCGCGTGGGCGCG
GGCGTGGGCGTCGCTGTCGCCCTCAGAACGTGGGCTTGGCTTGAAGGCGT
GTGGTTAGCGTCTTCTTCTAGCGCCGTTGCCATGGACGACGAAAACTCCC
CGCCGCTGAGACCGCCCGCGCGTCCACAGTCGCCGTTGCTGTTGCCATCC
GAGCGTGTCCCGCTTGCGCCACCGCATATCGATCATAACGCGTCTACGCC
GTCTGCCTACGAGTCACCTACTCCGCCCACCTCCCCCTCTACCGACTATC
CGTACGGCGCTGTGGCGCGCGTCGTACCGCCTAGTCCGGATGCCGATGGC
TATCGCGAGCGCCCACAGCGCGAGTCTATTCAGCGCCGCCGCCAACGCAT
TGCTGATACCACTATTCTGGGAATTGCTATCTTCGTTGTCACGGGAGTTG
TGTTTCTTGTCATGGCCACCGGATTTACCGCTATGGTTACCAACGAGAAT
TCTCCACGGTTGCAGATCTTTTCCGCGTGGCCGGATGGCGGTGTCATTCC
GTTGGAGTACGGTTGTCATGCTTCTGATGGTGTTCCTATCTCTATCCCTC
TTCGCTGGGAAGATGTGCCTCCCTCAGCCACCAATCTCGTCATTCTCTTC
TCGCACCCTGGCGCGTTGAACGAATCGAAGGTCGACCCCGTACATTGGTT
TGTCACGAATATTCCGCTTGGACCTGACCACGACAATCACATGCCGCCCA
ATGCTTCCACAAACCCAGCTCTGCTTCCGCACGGCGCTGTTGAGCGTGCG
AATGTTTATTCGCATGGTGGGTATTATTGGCCGCCTTGTTCGAAAACTAC
CAGCTTGTTTACGATCCATGTGTATGCCGTTGAGGCTCCTGCCGTCATTT
AG
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protein sequence of Ggra24.t1

>Ggra24.t1 ID=Ggra24.t1|Name=Ggra24.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MVGTITAVGGGTIRDAVILAKRLFWTEEVEYLYLCIATAASTFALYAACA
PRAAREESAVEFVADTIGVGAFCVIGAMNGVRARVPIAVVVFCDMATATF
GGVVRDMLCSRKVRIMHSAAEIYATTAAAGAATYVATAAGGASVPARVGA
GVGVAVALRTWAWLEGVWLASSSSAVAMDDENSPPLRPPARPQSPLLLPS
ERVPLAPPHIDHNASTPSAYESPTPPTSPSTDYPYGAVARVVPPSPDADG
YRERPQRESIQRRRQRIADTTILGIAIFVVTGVVFLVMATGFTAMVTNEN
SPRLQIFSAWPDGGVIPLEYGCHASDGVPISIPLRWEDVPPSATNLVILF
SHPGALNESKVDPVHWFVTNIPLGPDHDNHMPPNASTNPALLPHGAVERA
NVYSHGGYYWPPCSKTTSLFTIHVYAVEAPAVI*
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mRNA from alignment at tig00000949_pilon:16433..17998+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra24.t1 ID=Ggra24.t1|Name=Ggra24.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000949_pilon:16433..17998+ (Gracilaria gracilis GNS1m male)
ATGGTGGGTACCATCACCGCCGTTGGCGGCGGCACCATTCGCGACGCCGT
CATTCTTGCAAAGCGTCTGTTCTGGACGGAAGAGGTGGAATACCTCTACC
TGTGCATCGCCACGGCCGCCTCCACCTTcgcgctgtacgcagcgtgcgcg
ccgcgcgccgcgcgcgAGGAGAGCGCCGTGGAGTTCGTGGCTGACACCAT
CGGCGTGGGTGCGTTTTGCGTCATTGGCGCCATGAACGGCGTGAGAGCGC
GAGTACCAATCGCAGTCGTCGTTTTTTGCGACATGGCAACCGCCACCTTT
GGCGGCGTCGTCAGAGACATGCTCTGCAGCAGAAAGGTGCGTATTATGCA
CTCGGCTGCCGAGATCTAcgccaccaccgccgccgccggcgctgccacgt
acgtcgccaccgccgcgggcggcgcTTCTGTGCCCGCGCGCGTGGGCGCG
GGCGTGGGCGTCGCTGTCGCCCTCAGAACGTGGGCTTGGCTTGAAGGCGT
GTGGTTAGCGGTTTGGCCCGAGAACGCGCCCGCGCAGCAGTAGATTTGTG
CGCGCGGCGGGCGCCGCGCCCGCAGTGGCCAGCAGCTTTTTGTATTCATA
TATTATCCTACAGCTGTCTGCATATTTTTGTCACCTCGCGCTCGTGTCGT
GTCGTGTCCATTGGCTTTATCCAATTGACAGTCTTCTTCTAGCGCCGTTG
CCATGGACGACGAAAACTCCCCGCCGCTGAGACCGCCCGCGCGTCCACAG
TCGCCGTTGCTGTTGCCATCCGAGCGTGTCCCGCTTGCGCCACCGCATAT
CGATCATAACGCGTCTACGCCGTCTGCCTACGAGTCACCTACTCCGCCCA
CCTCCCCCTCTACCGACTATCCGTACGGCGCTGTGGCGCGCGTCGTACCG
CCTAGTCCGGATGCCGATGGCTATCGCGAGCGCCGTACGTTGAGGGTGTC
CGATCTGTGCAGACCGTGCACTTGATCACCGACTCTTCGCAGAGCGAATG
TTCGCAGGGGTCCCTACCTCGATCGAGCACAGCGCGAGTCTATTCAGCGC
CGCCGCCAACGCATTGCTGATACCACTATTCTGGGAATTGCTATCTTCGT
TGTCACGGGAGTTGTGTTTCTTGTCATGGCCACCGGATTTACCGCTATGG
TTACCAACGAGAATTCTCCACGGTTGCAGATCTTTTCCGCGTGGCCGGAT
GGCGGTGTCATTCCGTTGGAGTACGGTTGTCATGCTTCTGATGGTGTTCC
TATCTCTATCCCTCTTCGCTGGGAAGATGTGCCTCCCTCAGCCACCAATC
TCGTCATTCTCTTCTCGCACCCTGGCGCGTTGAACGAATCGAAGGTCGAC
CCCGTACATTGGTTTGTCACGAATATTCCGCTTGGACCTGACCACGACAA
TCACATGCCGCCCAATGCTTCCACAAACCCAGCTCTGCTTCCGCACGGCG
CTGTTGAGCGTGCGAATGTTTATTCGCATGGTGGGTATTATTGGCCGCCT
TGTTCGAAAACTACCAGCTTGTTTACGATCCATGTGTATGCCGTTGAGGC
TCCTGCCGTCATTTAG
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Coding sequence (CDS) from alignment at tig00000949_pilon:16433..17998+

>Ggra24.t1 ID=Ggra24.t1|Name=Ggra24.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000949_pilon:16433..17998+ (Gracilaria gracilis GNS1m male)
ATGGTGGGTACCATCACCGCCGTTGGCGGCGGCACCATTCGCGACGCCGT
CATTCTTGCAAAGCGTCTGTTCTGGACGGAAGAGGTGGAATACCTCTACC
TGTGCATCGCCACGGCCGCCTCCACCTTcgcgctgtacgcagcgtgcgcg
ccgcgcgccgcgcgcgAGGAGAGCGCCGTGGAGTTCGTGGCTGACACCAT
CGGCGTGGGTGCGTTTTGCGTCATTGGCGCCATGAACGGCGTGAGAGCGC
GAGTACCAATCGCAGTCGTCGTTTTTTGCGACATGGCAACCGCCACCTTT
GGCGGCGTCGTCAGAGACATGCTCTGCAGCAGAAAGGTGCGTATTATGCA
CTCGGCTGCCGAGATCTAcgccaccaccgccgccgccggcgctgccacgt
acgtcgccaccgccgcgggcggcgcTTCTGTGCCCGCGCGCGTGGGCGCG
GGCGTGGGCGTCGCTGTCGCCCTCAGAACGTGGGCTTGGCTTGAAGGCGT
GTGGTTAGCGTCTTCTTCTAGCGCCGTTGCCATGGACGACGAAAACTCCC
CGCCGCTGAGACCGCCCGCGCGTCCACAGTCGCCGTTGCTGTTGCCATCC
GAGCGTGTCCCGCTTGCGCCACCGCATATCGATCATAACGCGTCTACGCC
GTCTGCCTACGAGTCACCTACTCCGCCCACCTCCCCCTCTACCGACTATC
CGTACGGCGCTGTGGCGCGCGTCGTACCGCCTAGTCCGGATGCCGATGGC
TATCGCGAGCGCCCACAGCGCGAGTCTATTCAGCGCCGCCGCCAACGCAT
TGCTGATACCACTATTCTGGGAATTGCTATCTTCGTTGTCACGGGAGTTG
TGTTTCTTGTCATGGCCACCGGATTTACCGCTATGGTTACCAACGAGAAT
TCTCCACGGTTGCAGATCTTTTCCGCGTGGCCGGATGGCGGTGTCATTCC
GTTGGAGTACGGTTGTCATGCTTCTGATGGTGTTCCTATCTCTATCCCTC
TTCGCTGGGAAGATGTGCCTCCCTCAGCCACCAATCTCGTCATTCTCTTC
TCGCACCCTGGCGCGTTGAACGAATCGAAGGTCGACCCCGTACATTGGTT
TGTCACGAATATTCCGCTTGGACCTGACCACGACAATCACATGCCGCCCA
ATGCTTCCACAAACCCAGCTCTGCTTCCGCACGGCGCTGTTGAGCGTGCG
AATGTTTATTCGCATGGTGGGTATTATTGGCCGCCTTGTTCGAAAACTAC
CAGCTTGTTTACGATCCATGTGTATGCCGTTGAGGCTCCTGCCGTCATTT
AG
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