Ggra2385.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2385.t1
Unique NameGgra2385.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:98428..99270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2385Ggra2385Gracilaria gracilis GNS1m malegenetig00000005_pilon 98428..99270 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2385.t1.stop1Ggra2385.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 98428..98430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2385.t1.CDS1Ggra2385.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 98428..99270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2385.t1.exon1Ggra2385.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 98428..99270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2385.t1.start1Ggra2385.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 99268..99270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2385.t1Ggra2385.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 98428..99270 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2385.t1 ID=Ggra2385.t1|Name=Ggra2385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=281bp
MDLLDFSLAPNAVDDANQPSSSTQPAAMQNLLNANHNLPQQQLPWAAAAD
IPFSTNPAQQPQASSAPQASAAPSSSQPLAMQKRPHSQPLRPASFALDED
PSIDPHVVNQMGGLAYADHCKERARERFKEMKKNEHMANGDFDRMKRRKK
GDTSMTPRQKYLRRLRMNQDSAAAARHAQEVYVHVLEKLVKTSEGDKKAL
MTELHSLRQENFNLHNRVSELETVVGRPVAEPSFLDATRRPYDPIQVAKL
VDMLTAPQTVSAEAADPDFARECIQPARAV*
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spliced messenger RNA

>Ggra2385.t1 ID=Ggra2385.t1|Name=Ggra2385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000005_pilon:98428..99270- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTACTAGACTTCAGTCTGGCGCCCAACGCTGTTGACGACGCCAA
CCAACCGTCCTCCTCAACTCAACCCGCCGCCATGCAAAACCTTCTCAACG
CCAATCACAACCTTCCACAGCAGCAATTGCCATGGGCTGCTGCTGCCGAC
ATTCCGTTCTCCACCAACCCAGCACAACAACCGCAGGCCTCCTCCGCGCC
GCAGGCAAGCGCTGCGCCTTCCTCGTCCCAACCATTAGCCATGCAGAAGC
GCCCGCATTCGCAACCACTGCGCCCGGCCAGTTTCGCGCTCGACGAAGAC
CCCTCTATCGACCCGCATGTGGTCAACCAAATGGGTGGTCTTGCTTACGC
TGACCATTGCAAAGAGCGCGCGCGCGAACGCTTCAAGGAAATGAAGAAGA
ATGAACACATGGCCAACGGTGACTTTGACCGCATGAAGAGGCGCAAGAAG
GGTGACACCTCCATGACACCGCGCCAAAAGTACCTCAGGCGCTTAAGGAT
GAACCAGGATTCGGCCGCCGCCGCAAGACATGCACAAGAAGTTTACGTGC
ATGTGCTGGAAAAGCTTGTCAAGACTTCTGAAGGCGATAAGAAGGCACTT
ATGACAGAGTTGCATTCACTTCGTCAGGAGAACTTTAACTTGCACAACAG
GGTATCAGAGCTAGAGACAGTAGTTGGCAGACCAGTGGCAGAGCCATCGT
TCCTGGACGCAACTAGGAGGCCATACGATCCGATTCAAGTCGCAAAATTG
GTGGACATGCTCACCGCACCTCAAACAGTGTCGGCCGAAGCGGCCGACCC
GGACTTTGCTCGTGAATGCATTCAGCCGGCGCGCGCTGTTTGA
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protein sequence of Ggra2385.t1

>Ggra2385.t1 ID=Ggra2385.t1|Name=Ggra2385.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MDLLDFSLAPNAVDDANQPSSSTQPAAMQNLLNANHNLPQQQLPWAAAAD
IPFSTNPAQQPQASSAPQASAAPSSSQPLAMQKRPHSQPLRPASFALDED
PSIDPHVVNQMGGLAYADHCKERARERFKEMKKNEHMANGDFDRMKRRKK
GDTSMTPRQKYLRRLRMNQDSAAAARHAQEVYVHVLEKLVKTSEGDKKAL
MTELHSLRQENFNLHNRVSELETVVGRPVAEPSFLDATRRPYDPIQVAKL
VDMLTAPQTVSAEAADPDFARECIQPARAV*
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mRNA from alignment at tig00000005_pilon:98428..99270-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2385.t1 ID=Ggra2385.t1|Name=Ggra2385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000005_pilon:98428..99270- (Gracilaria gracilis GNS1m male)
ATGGACCTACTAGACTTCAGTCTGGCGCCCAACGCTGTTGACGACGCCAA
CCAACCGTCCTCCTCAACTCAACCCGCCGCCATGCAAAACCTTCTCAACG
CCAATCACAACCTTCCACAGCAGCAATTGCCATGGGCTGCTGCTGCCGAC
ATTCCGTTCTCCACCAACCCAGCACAACAACCGCAGGCCTCCTCCGCGCC
GCAGGCAAGCGCTGCGCCTTCCTCGTCCCAACCATTAGCCATGCAGAAGC
GCCCGCATTCGCAACCACTGCGCCCGGCCAGTTTCGCGCTCGACGAAGAC
CCCTCTATCGACCCGCATGTGGTCAACCAAATGGGTGGTCTTGCTTACGC
TGACCATTGCAAAGAGCGCGCGCGCGAACGCTTCAAGGAAATGAAGAAGA
ATGAACACATGGCCAACGGTGACTTTGACCGCATGAAGAGGCGCAAGAAG
GGTGACACCTCCATGACACCGCGCCAAAAGTACCTCAGGCGCTTAAGGAT
GAACCAGGATTCGGCCGCCGCCGCAAGACATGCACAAGAAGTTTACGTGC
ATGTGCTGGAAAAGCTTGTCAAGACTTCTGAAGGCGATAAGAAGGCACTT
ATGACAGAGTTGCATTCACTTCGTCAGGAGAACTTTAACTTGCACAACAG
GGTATCAGAGCTAGAGACAGTAGTTGGCAGACCAGTGGCAGAGCCATCGT
TCCTGGACGCAACTAGGAGGCCATACGATCCGATTCAAGTCGCAAAATTG
GTGGACATGCTCACCGCACCTCAAACAGTGTCGGCCGAAGCGGCCGACCC
GGACTTTGCTCGTGAATGCATTCAGCCGGCGCGCGCTGTTTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:98428..99270-

>Ggra2385.t1 ID=Ggra2385.t1|Name=Ggra2385.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000005_pilon:98428..99270- (Gracilaria gracilis GNS1m male)
ATGGACCTACTAGACTTCAGTCTGGCGCCCAACGCTGTTGACGACGCCAA
CCAACCGTCCTCCTCAACTCAACCCGCCGCCATGCAAAACCTTCTCAACG
CCAATCACAACCTTCCACAGCAGCAATTGCCATGGGCTGCTGCTGCCGAC
ATTCCGTTCTCCACCAACCCAGCACAACAACCGCAGGCCTCCTCCGCGCC
GCAGGCAAGCGCTGCGCCTTCCTCGTCCCAACCATTAGCCATGCAGAAGC
GCCCGCATTCGCAACCACTGCGCCCGGCCAGTTTCGCGCTCGACGAAGAC
CCCTCTATCGACCCGCATGTGGTCAACCAAATGGGTGGTCTTGCTTACGC
TGACCATTGCAAAGAGCGCGCGCGCGAACGCTTCAAGGAAATGAAGAAGA
ATGAACACATGGCCAACGGTGACTTTGACCGCATGAAGAGGCGCAAGAAG
GGTGACACCTCCATGACACCGCGCCAAAAGTACCTCAGGCGCTTAAGGAT
GAACCAGGATTCGGCCGCCGCCGCAAGACATGCACAAGAAGTTTACGTGC
ATGTGCTGGAAAAGCTTGTCAAGACTTCTGAAGGCGATAAGAAGGCACTT
ATGACAGAGTTGCATTCACTTCGTCAGGAGAACTTTAACTTGCACAACAG
GGTATCAGAGCTAGAGACAGTAGTTGGCAGACCAGTGGCAGAGCCATCGT
TCCTGGACGCAACTAGGAGGCCATACGATCCGATTCAAGTCGCAAAATTG
GTGGACATGCTCACCGCACCTCAAACAGTGTCGGCCGAAGCGGCCGACCC
GGACTTTGCTCGTGAATGCATTCAGCCGGCGCGCGCTGTTTGA
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