Ggra2379.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2379.t1
Unique Name	Ggra2379.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:86188..87231 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX50045
Max annot lvl	2759\|Eukaryota
Evalue	2.28e-05
EggNOG OGs	2E7EQ@1\|root,2SE0Z@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2379	Ggra2379	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 86188..87231 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2379.t1.start1	Ggra2379.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 86188..86190 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2379.t1.CDS1	Ggra2379.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 86188..87231 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2379.t1.exon1	Ggra2379.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 86188..87231 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2379.t1.stop1	Ggra2379.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 87229..87231 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2379.t1	Ggra2379.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 86188..87231 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:86188..87231+
coding sequence from alignment at tig00000005_pilon:86188..87231+

mRNA sequence

>Ggra2379.t1 ID=Ggra2379.t1|Name=Ggra2379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp
MCVVAEEYRKSESDSGLATLTWIPLTQCPTPHHHKPYHSNTLCCTREVDY
RSRQCSRRSVILSLAAAALSLPLKEAGAVCGEPDPFFAHFLDWQEGYAAF
EGREVHYRLIGSKKKEQKANKYPVVYLGDAGVAMGSGETLELLGGTDRRV
LLVDQLGVGESKGLGAQQKYQWADVAADELSAVLLRSEIANKKAPTRIHL
VAVGFGIQVADVLLKRSNVERTGFQVASVVTEGWSLPRDIKNVSFSAMQG
ERVCAVEGADGGNIDLLRAIYGGTNWNPKGVLRDISALVPVMALQMKEWP
SIDLQDTSIRKKELDGDGRIPHLAASDRSLGLMETFFDEVEGNESKD*

spliced messenger RNA

>Ggra2379.t1 ID=Ggra2379.t1|Name=Ggra2379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000005_pilon:86188..87231+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTAGTGGCGGAGGAGTATCGGAAGAGTGAGTCTGACTCAGGTTT
AGCCACATTGACCTGGATTCCACTAACTCAATGCCCAACCCCTCATCACC
ACAAGCCATATCATTCAAACACGTTGTGTTGCACGCGAGAAGTTGATTAC
CGCAGCCGACAATGCTCCCGAAGATCTGTTATCCTATCGTTGGCGGCGGC
AGCCCTGTCACTACCTTTGAAAGAGGCTGGCGCCGTGTGTGGTGAGCCCG
ACCCCTTCTTCGCTCATTTCTTGGATTGGCAGGAGGGCTATGCAGCTTTT
GAAGGTCGCGAGGTACATTACCGACTGATTGGCTCCAAGAAGAAAGAGCA
GAAGGCCAACAAGTATCCTGTAGTGTACCTGGGGGACGCCGGTGTTGCTA
TGGGTAGTGGTGAAACATTAGAATTGCTGGGGGGAACAGATCGACGTGTC
TTACTTGTTGACCAGCTCGGAGTTGGAGAGTCAAAGGGTTTAGGTGCACA
GCAGAAGTATCAGTGGGCTGACGTTGCTGCTGATGAACTATCAGCTGTCC
TTCTGCGGTCAGAGATTGCAAATAAGAAGGCACCCACGAGAATTCATCTT
GTTGCAGTTGGATTTGGCATTCAGGTAGCAGATGTGCTCCTTAAGCGATC
CAATGTCGAAAGAACAGGCTTTCAAGTGGCCTCAGTAGTTACGGAAGGAT
GGTCCCTGCCTCGCGACATCAAGAATGTATCTTTTAGCGCCATGCAAGGC
GAACGGGTTTGTGCAGTAGAAGGAGCTGATGGTGGTAACATTGATCTACT
GCGAGCGATTTATGGCGGTACGAATTGGAATCCCAAGGGTGTACTGAGGG
ATATATCTGCACTTGTTCCAGTGATGGCGCTGCAAATGAAGGAGTGGCCG
TCCATAGATTTGCAAGACACATCGATAAGAAAAAAAGAGCTTGATGGAGA
TGGGCGAATCCCACATTTGGCGGCCTCTGACAGAAGTCTGGGACTGATGG
AGACCTTTTTTGACGAGGTCGAGGGTAACGAGTCCAAGGATTGA

protein sequence of Ggra2379.t1

>Ggra2379.t1 ID=Ggra2379.t1|Name=Ggra2379.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MCVVAEEYRKSESDSGLATLTWIPLTQCPTPHHHKPYHSNTLCCTREVDY
RSRQCSRRSVILSLAAAALSLPLKEAGAVCGEPDPFFAHFLDWQEGYAAF
EGREVHYRLIGSKKKEQKANKYPVVYLGDAGVAMGSGETLELLGGTDRRV
LLVDQLGVGESKGLGAQQKYQWADVAADELSAVLLRSEIANKKAPTRIHL
VAVGFGIQVADVLLKRSNVERTGFQVASVVTEGWSLPRDIKNVSFSAMQG
ERVCAVEGADGGNIDLLRAIYGGTNWNPKGVLRDISALVPVMALQMKEWP
SIDLQDTSIRKKELDGDGRIPHLAASDRSLGLMETFFDEVEGNESKD*

mRNA from alignment at tig00000005_pilon:86188..87231+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2379.t1 ID=Ggra2379.t1|Name=Ggra2379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000005_pilon:86188..87231+ (Gracilaria gracilis GNS1m male)
ATGTGCGTAGTGGCGGAGGAGTATCGGAAGAGTGAGTCTGACTCAGGTTT
AGCCACATTGACCTGGATTCCACTAACTCAATGCCCAACCCCTCATCACC
ACAAGCCATATCATTCAAACACGTTGTGTTGCACGCGAGAAGTTGATTAC
CGCAGCCGACAATGCTCCCGAAGATCTGTTATCCTATCGTTGGCGGCGGC
AGCCCTGTCACTACCTTTGAAAGAGGCTGGCGCCGTGTGTGGTGAGCCCG
ACCCCTTCTTCGCTCATTTCTTGGATTGGCAGGAGGGCTATGCAGCTTTT
GAAGGTCGCGAGGTACATTACCGACTGATTGGCTCCAAGAAGAAAGAGCA
GAAGGCCAACAAGTATCCTGTAGTGTACCTGGGGGACGCCGGTGTTGCTA
TGGGTAGTGGTGAAACATTAGAATTGCTGGGGGGAACAGATCGACGTGTC
TTACTTGTTGACCAGCTCGGAGTTGGAGAGTCAAAGGGTTTAGGTGCACA
GCAGAAGTATCAGTGGGCTGACGTTGCTGCTGATGAACTATCAGCTGTCC
TTCTGCGGTCAGAGATTGCAAATAAGAAGGCACCCACGAGAATTCATCTT
GTTGCAGTTGGATTTGGCATTCAGGTAGCAGATGTGCTCCTTAAGCGATC
CAATGTCGAAAGAACAGGCTTTCAAGTGGCCTCAGTAGTTACGGAAGGAT
GGTCCCTGCCTCGCGACATCAAGAATGTATCTTTTAGCGCCATGCAAGGC
GAACGGGTTTGTGCAGTAGAAGGAGCTGATGGTGGTAACATTGATCTACT
GCGAGCGATTTATGGCGGTACGAATTGGAATCCCAAGGGTGTACTGAGGG
ATATATCTGCACTTGTTCCAGTGATGGCGCTGCAAATGAAGGAGTGGCCG
TCCATAGATTTGCAAGACACATCGATAAGAAAAAAAGAGCTTGATGGAGA
TGGGCGAATCCCACATTTGGCGGCCTCTGACAGAAGTCTGGGACTGATGG
AGACCTTTTTTGACGAGGTCGAGGGTAACGAGTCCAAGGATTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:86188..87231+

>Ggra2379.t1 ID=Ggra2379.t1|Name=Ggra2379.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000005_pilon:86188..87231+ (Gracilaria gracilis GNS1m male)
ATGTGCGTAGTGGCGGAGGAGTATCGGAAGAGTGAGTCTGACTCAGGTTT
AGCCACATTGACCTGGATTCCACTAACTCAATGCCCAACCCCTCATCACC
ACAAGCCATATCATTCAAACACGTTGTGTTGCACGCGAGAAGTTGATTAC
CGCAGCCGACAATGCTCCCGAAGATCTGTTATCCTATCGTTGGCGGCGGC
AGCCCTGTCACTACCTTTGAAAGAGGCTGGCGCCGTGTGTGGTGAGCCCG
ACCCCTTCTTCGCTCATTTCTTGGATTGGCAGGAGGGCTATGCAGCTTTT
GAAGGTCGCGAGGTACATTACCGACTGATTGGCTCCAAGAAGAAAGAGCA
GAAGGCCAACAAGTATCCTGTAGTGTACCTGGGGGACGCCGGTGTTGCTA
TGGGTAGTGGTGAAACATTAGAATTGCTGGGGGGAACAGATCGACGTGTC
TTACTTGTTGACCAGCTCGGAGTTGGAGAGTCAAAGGGTTTAGGTGCACA
GCAGAAGTATCAGTGGGCTGACGTTGCTGCTGATGAACTATCAGCTGTCC
TTCTGCGGTCAGAGATTGCAAATAAGAAGGCACCCACGAGAATTCATCTT
GTTGCAGTTGGATTTGGCATTCAGGTAGCAGATGTGCTCCTTAAGCGATC
CAATGTCGAAAGAACAGGCTTTCAAGTGGCCTCAGTAGTTACGGAAGGAT
GGTCCCTGCCTCGCGACATCAAGAATGTATCTTTTAGCGCCATGCAAGGC
GAACGGGTTTGTGCAGTAGAAGGAGCTGATGGTGGTAACATTGATCTACT
GCGAGCGATTTATGGCGGTACGAATTGGAATCCCAAGGGTGTACTGAGGG
ATATATCTGCACTTGTTCCAGTGATGGCGCTGCAAATGAAGGAGTGGCCG
TCCATAGATTTGCAAGACACATCGATAAGAAAAAAAGAGCTTGATGGAGA
TGGGCGAATCCCACATTTGGCGGCCTCTGACAGAAGTCTGGGACTGATGG
AGACCTTTTTTGACGAGGTCGAGGGTAACGAGTCCAAGGATTGA