Ggra2372.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2372.t1
Unique NameGgra2372.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:64846..66291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07294
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue2.27e-12
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2372Ggra2372Gracilaria gracilis GNS1m malegenetig00000005_pilon 64846..66291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2372.t1Ggra2372.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 64846..66291 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2372.t1.start1Ggra2372.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 64846..64848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2372.t1.CDS1Ggra2372.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 64846..65391 +
Ggra2372.t1.CDS2Ggra2372.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 65474..65542 +
Ggra2372.t1.CDS3Ggra2372.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 65767..66291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2372.t1.exon1Ggra2372.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 64846..65391 +
Ggra2372.t1.exon2Ggra2372.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 65474..65542 +
Ggra2372.t1.exon3Ggra2372.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 65767..66291 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2372.t1.intron1Ggra2372.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 65392..65473 +
Ggra2372.t1.intron2Ggra2372.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 65543..65766 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2372.t1.stop1Ggra2372.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 66289..66291 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2372.t1 ID=Ggra2372.t1|Name=Ggra2372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MAFARIVLFAAVVLARFAAVAALPVDPVFVPIFTSHDTPSMRPFTRSGSE
PPNPTTVTSCGQWISIYERHWQKYPDCHRGKTNRLCCQLYDLMDKSIRIF
KHQLKCEVTNMAFYQKKFSSFCVNGGSTATHTSTAAGTVTTSTTSTSSET
ASISLRPPVAIGGSHGTGKITILEEESTHTGQHVPPQVADALDSIVPNPV
RAFTVCVGVTQNNGDGGNVCFHPLTTVQLASGELKPMHQLRVDDHVHVGF
GKYSRVFMFTHNDAYIPATFMNVTVQSGESIMLTPSHFIYLEQGLMQAAH
IKTDIQMQMHDGRYEAVVHANRVRSFGLYNPQTMHGDIAVSGFRASTYTT
TVPSGTAHALLAPLRALYRICGAHISAVF*
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spliced messenger RNA

>Ggra2372.t1 ID=Ggra2372.t1|Name=Ggra2372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000005_pilon:64846..66291+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGCACGCATTGTTTTGTTCGCCGCTGTTGTGCTCGCGCGCTT
TGCCGCCGTCGCTGCCTTGCCGGTTGACCCTGTTTTCGTTCCGATTTTCA
CCTCACATGACACTCCCAGTATGCGACCTTTCACCCGCTCGGGCTCCGAG
CCGCCTAATCCAACCACCGTAACGTCTTGCGGTCAATGGATATCGATCTA
CGAACGTCACTGGCAAAAGTATCCAGACTGCCACCGTGGAAAGACCAATC
GCCTATGTTGTCAGCTCTACGATCTCATGGATAAGTCCATCCGCATTTTC
AAGCATCAGCTCAAATGTGAGGTAACCAACATGGCTTTCTATCAGAAGAA
GTTTTCTTCCTTTTGCGTCAATGGTGGCTCCACAGCCACCCACACTTCTA
CCGCCGCTGGTACAGTAACCACCTCCACAACTTCTACCTCTTCCGAAACC
GCCTCCATCAGCCTGCGACCGCCAGTCGCTATTGGCGGCTCACACGGAAC
CGGTAAGATCACCATCTTGGAAGAGGAGTCTACACATACTGGCCAGCATG
TACCTCCACAAGTTGCGGATGCGTTGGACAGCATTGTACCCAACCCTGTC
AGGGCGTTCACTGTGTGTGTCGGTGTCACTCAGAACAATGGTGATGGAGG
AAATGTGTGCTTCCATCCGCTAACCACAGTTCAGCTAGCCTCTGGCGAAC
TCAAACCGATGCACCAACTTCGCGTTGATGATCATGTGCATGTTGGATTC
GGCAAGTACAGTCGTGTCTTCATGTTCACTCACAACGACGCTTATATTCC
AGCTACTTTCATGAATGTGACGGTGCAAAGCGGTGAATCCATCATGCTCA
CTCCCTCTCATTTCATATATTTGGAACAAGGTCTCATGCAAGCTGCTCAT
ATCAAGACCGATATCCAAATGCAGATGCATGACGGACGATACGAAGCTGT
TGTACATGCTAATCGTGTTCGCAGCTTCGGCTTGTATAACCCGCAAACTA
TGCATGGTGACATTGCGGTATCTGGTTTCCGTGCTTCAACGTACACCACT
ACGGTTCCGTCAGGTACTGCACATGCCTTGCTTGCGCCACTACGAGCGCT
TTATCGGATATGCGGCGCTCACATTTCTGCTGTTTTCTGA
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protein sequence of Ggra2372.t1

>Ggra2372.t1 ID=Ggra2372.t1|Name=Ggra2372.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MAFARIVLFAAVVLARFAAVAALPVDPVFVPIFTSHDTPSMRPFTRSGSE
PPNPTTVTSCGQWISIYERHWQKYPDCHRGKTNRLCCQLYDLMDKSIRIF
KHQLKCEVTNMAFYQKKFSSFCVNGGSTATHTSTAAGTVTTSTTSTSSET
ASISLRPPVAIGGSHGTGKITILEEESTHTGQHVPPQVADALDSIVPNPV
RAFTVCVGVTQNNGDGGNVCFHPLTTVQLASGELKPMHQLRVDDHVHVGF
GKYSRVFMFTHNDAYIPATFMNVTVQSGESIMLTPSHFIYLEQGLMQAAH
IKTDIQMQMHDGRYEAVVHANRVRSFGLYNPQTMHGDIAVSGFRASTYTT
TVPSGTAHALLAPLRALYRICGAHISAVF*
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mRNA from alignment at tig00000005_pilon:64846..66291+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2372.t1 ID=Ggra2372.t1|Name=Ggra2372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000005_pilon:64846..66291+ (Gracilaria gracilis GNS1m male)
ATGGCTTTTGCACGCATTGTTTTGTTCGCCGCTGTTGTGCTCGCGCGCTT
TGCCGCCGTCGCTGCCTTGCCGGTTGACCCTGTTTTCGTTCCGATTTTCA
CCTCACATGACACTCCCAGTATGCGACCTTTCACCCGCTCGGGCTCCGAG
CCGCCTAATCCAACCACCGTAACGTCTTGCGGTCAATGGATATCGATCTA
CGAACGTCACTGGCAAAAGTATCCAGACTGCCACCGTGGAAAGACCAATC
GCCTATGTTGTCAGCTCTACGATCTCATGGATAAGTCCATCCGCATTTTC
AAGCATCAGCTCAAATGTGAGGTAACCAACATGGCTTTCTATCAGAAGAA
GTTTTCTTCCTTTTGCGTCAATGGTGGCTCCACAGCCACCCACACTTCTA
CCGCCGCTGGTACAGTAACCACCTCCACAACTTCTACCTCTTCCGAAACC
GCCTCCATCAGCCTGCGACCGCCAGTCGCTATTGGCGGCTCACACGGAAC
CGGTAAGATCACCATCTTGGAAGAGGAGTCTACACATACTGGCCAGGTAT
GTTCCTTGGGCAATTGCTGTACCGGTCAAAGTTGCTTCTGCGAAACCTGT
ACCGCCACTACCACAACTACAACCACAGCATGTACCTCCACAAGTTGCGG
ATGCGTTGGACAGCATTGTACCCAACCCTGTCAGGGCGTTCACTGTGGTA
CTTCCTGTACCGGCGTCAACTGTGGCACTCCTTGTACCGGCGTACACTGC
AATACTGGATGCGTCGGCGCGAACTGCAATGTCGTCCAacagccacaacc
acaacaaccggtacaaccacaacaaccggtacaaccacaacaacCGGTAC
AACCTGTGGATCCGGCCCCCAATGAGTGCCAACCTGGTGTCAACTGTGCT
GGTGTTTGCGTCAATAACCAGTGTGTCGGTGTCACTCAGAACAATGGTGA
TGGAGGAAATGTGTGCTTCCATCCGCTAACCACAGTTCAGCTAGCCTCTG
GCGAACTCAAACCGATGCACCAACTTCGCGTTGATGATCATGTGCATGTT
GGATTCGGCAAGTACAGTCGTGTCTTCATGTTCACTCACAACGACGCTTA
TATTCCAGCTACTTTCATGAATGTGACGGTGCAAAGCGGTGAATCCATCA
TGCTCACTCCCTCTCATTTCATATATTTGGAACAAGGTCTCATGCAAGCT
GCTCATATCAAGACCGATATCCAAATGCAGATGCATGACGGACGATACGA
AGCTGTTGTACATGCTAATCGTGTTCGCAGCTTCGGCTTGTATAACCCGC
AAACTATGCATGGTGACATTGCGGTATCTGGTTTCCGTGCTTCAACGTAC
ACCACTACGGTTCCGTCAGGTACTGCACATGCCTTGCTTGCGCCACTACG
AGCGCTTTATCGGATATGCGGCGCTCACATTTCTGCTGTTTTCTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:64846..66291+

>Ggra2372.t1 ID=Ggra2372.t1|Name=Ggra2372.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000005_pilon:64846..66291+ (Gracilaria gracilis GNS1m male)
ATGGCTTTTGCACGCATTGTTTTGTTCGCCGCTGTTGTGCTCGCGCGCTT
TGCCGCCGTCGCTGCCTTGCCGGTTGACCCTGTTTTCGTTCCGATTTTCA
CCTCACATGACACTCCCAGTATGCGACCTTTCACCCGCTCGGGCTCCGAG
CCGCCTAATCCAACCACCGTAACGTCTTGCGGTCAATGGATATCGATCTA
CGAACGTCACTGGCAAAAGTATCCAGACTGCCACCGTGGAAAGACCAATC
GCCTATGTTGTCAGCTCTACGATCTCATGGATAAGTCCATCCGCATTTTC
AAGCATCAGCTCAAATGTGAGGTAACCAACATGGCTTTCTATCAGAAGAA
GTTTTCTTCCTTTTGCGTCAATGGTGGCTCCACAGCCACCCACACTTCTA
CCGCCGCTGGTACAGTAACCACCTCCACAACTTCTACCTCTTCCGAAACC
GCCTCCATCAGCCTGCGACCGCCAGTCGCTATTGGCGGCTCACACGGAAC
CGGTAAGATCACCATCTTGGAAGAGGAGTCTACACATACTGGCCAGCATG
TACCTCCACAAGTTGCGGATGCGTTGGACAGCATTGTACCCAACCCTGTC
AGGGCGTTCACTGTGTGTGTCGGTGTCACTCAGAACAATGGTGATGGAGG
AAATGTGTGCTTCCATCCGCTAACCACAGTTCAGCTAGCCTCTGGCGAAC
TCAAACCGATGCACCAACTTCGCGTTGATGATCATGTGCATGTTGGATTC
GGCAAGTACAGTCGTGTCTTCATGTTCACTCACAACGACGCTTATATTCC
AGCTACTTTCATGAATGTGACGGTGCAAAGCGGTGAATCCATCATGCTCA
CTCCCTCTCATTTCATATATTTGGAACAAGGTCTCATGCAAGCTGCTCAT
ATCAAGACCGATATCCAAATGCAGATGCATGACGGACGATACGAAGCTGT
TGTACATGCTAATCGTGTTCGCAGCTTCGGCTTGTATAACCCGCAAACTA
TGCATGGTGACATTGCGGTATCTGGTTTCCGTGCTTCAACGTACACCACT
ACGGTTCCGTCAGGTACTGCACATGCCTTGCTTGCGCCACTACGAGCGCT
TTATCGGATATGCGGCGCTCACATTTCTGCTGTTTTCTGA
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