Ggra2346.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2346.t1
Unique NameGgra2346.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:400428..401174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2346Ggra2346Gracilaria gracilis GNS1m malegenetig00000122_pilon 400188..401174 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2346.t1.start1Ggra2346.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 400428..400430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2346.t1.CDS1Ggra2346.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 400428..401174 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2346.t1.exon1Ggra2346.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 400428..401174 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2346.t1.stop1Ggra2346.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 401172..401174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2346.t1Ggra2346.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 400428..401174 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2346.t1 ID=Ggra2346.t1|Name=Ggra2346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MCTKSKCSVYTAADATIPSETIPFACHLPPDAGSCITFHHMIDTVEAALN
AKVEASNSNNEALLHSVDAQNLVTELHAEDLLVNEELLTIDSIRHQLAPE
EEHTILSNARVIKDSVTQSARDALNISLEAGEAYDWNLKTAEHAHSAIQA
EKDAKNAEYQLEEHNSKAQKENRTCPVCKQLEQDIEKLTQLRKQDAVTAG
NSAKKCTNKRDIAALVLNDIHESRVRCGVARAKVLSAIAKLKTRLGLS*
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spliced messenger RNA

>Ggra2346.t1 ID=Ggra2346.t1|Name=Ggra2346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000122_pilon:400428..401174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACCAAGTCGAAATGCTCCGTGTACACAGCCGCGGACGCCACCAT
TCCGAGCGAGACCATTCCTTTTGCCTGTCATCTCCCCCCGGACGCTGGCT
CGTGCATCACCTTCCACCACATGATAGACACCGTGGAGGCTGCGTTAAAC
GCCAAGGTTGAGGCGAGTAACTCCAACAATGAGGCGCTTCTTCACAGCGT
TGATGCGCAGAACCTCGTCACCGAGCTGCATGCAGAAGACTTGCTCGTCA
ACGAGGAACTGCTCACCATCGATTCAATCAGGCATCAATTGGCACCCGAA
GAAGAACACACTATCCTTTCAAACGCCAGGGTGATCAAAGACTCCGTCAC
GCAAAGTGCTCGCGATGCGCTCAACATCAGCCTGGAGGCCGGCGAAGCTT
ATGATTGGAACTTGAAAACCGCCGAGCACGCTCACAGTGCGATCCAGGCT
GAGAAGGATGCCAAGAACGCAGAGTACCAACTGGAGGAGCATAACTCAAA
GGCGCAGAAGGAGAATCGAACTTGTCCCGTTTGCAAACAGCTTGAGCAGG
ACATTGAAAAACTGACGCAGCTTCGCAAACAGGACGCCGTGACCGCGGGA
AACTCCGCCAAGAAATGTACCAATAAGAGGGATATAGCGGCTCTTGTCCT
CAACGACATTCATGAGAGCCGCGTGAGATGCGGAGTGGCACGAGCAAAAG
TTCTTAGTGCGATTGCAAAACTCAAGACCCGTTTGGGTCTTTCCTGA
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protein sequence of Ggra2346.t1

>Ggra2346.t1 ID=Ggra2346.t1|Name=Ggra2346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MCTKSKCSVYTAADATIPSETIPFACHLPPDAGSCITFHHMIDTVEAALN
AKVEASNSNNEALLHSVDAQNLVTELHAEDLLVNEELLTIDSIRHQLAPE
EEHTILSNARVIKDSVTQSARDALNISLEAGEAYDWNLKTAEHAHSAIQA
EKDAKNAEYQLEEHNSKAQKENRTCPVCKQLEQDIEKLTQLRKQDAVTAG
NSAKKCTNKRDIAALVLNDIHESRVRCGVARAKVLSAIAKLKTRLGLS*
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mRNA from alignment at tig00000122_pilon:400428..401174+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2346.t1 ID=Ggra2346.t1|Name=Ggra2346.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000122_pilon:400428..401174+ (Gracilaria gracilis GNS1m male)
ATGTGCACCAAGTCGAAATGCTCCGTGTACACAGCCGCGGACGCCACCAT
TCCGAGCGAGACCATTCCTTTTGCCTGTCATCTCCCCCCGGACGCTGGCT
CGTGCATCACCTTCCACCACATGATAGACACCGTGGAGGCTGCGTTAAAC
GCCAAGGTTGAGGCGAGTAACTCCAACAATGAGGCGCTTCTTCACAGCGT
TGATGCGCAGAACCTCGTCACCGAGCTGCATGCAGAAGACTTGCTCGTCA
ACGAGGAACTGCTCACCATCGATTCAATCAGGCATCAATTGGCACCCGAA
GAAGAACACACTATCCTTTCAAACGCCAGGGTGATCAAAGACTCCGTCAC
GCAAAGTGCTCGCGATGCGCTCAACATCAGCCTGGAGGCCGGCGAAGCTT
ATGATTGGAACTTGAAAACCGCCGAGCACGCTCACAGTGCGATCCAGGCT
GAGAAGGATGCCAAGAACGCAGAGTACCAACTGGAGGAGCATAACTCAAA
GGCGCAGAAGGAGAATCGAACTTGTCCCGTTTGCAAACAGCTTGAGCAGG
ACATTGAAAAACTGACGCAGCTTCGCAAACAGGACGCCGTGACCGCGGGA
AACTCCGCCAAGAAATGTACCAATAAGAGGGATATAGCGGCTCTTGTCCT
CAACGACATTCATGAGAGCCGCGTGAGATGCGGAGTGGCACGAGCAAAAG
TTCTTAGTGCGATTGCAAAACTCAAGACCCGTTTGGGTCTTTCCTGA
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Coding sequence (CDS) from alignment at tig00000122_pilon:400428..401174+

>Ggra2346.t1 ID=Ggra2346.t1|Name=Ggra2346.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000122_pilon:400428..401174+ (Gracilaria gracilis GNS1m male)
ATGTGCACCAAGTCGAAATGCTCCGTGTACACAGCCGCGGACGCCACCAT
TCCGAGCGAGACCATTCCTTTTGCCTGTCATCTCCCCCCGGACGCTGGCT
CGTGCATCACCTTCCACCACATGATAGACACCGTGGAGGCTGCGTTAAAC
GCCAAGGTTGAGGCGAGTAACTCCAACAATGAGGCGCTTCTTCACAGCGT
TGATGCGCAGAACCTCGTCACCGAGCTGCATGCAGAAGACTTGCTCGTCA
ACGAGGAACTGCTCACCATCGATTCAATCAGGCATCAATTGGCACCCGAA
GAAGAACACACTATCCTTTCAAACGCCAGGGTGATCAAAGACTCCGTCAC
GCAAAGTGCTCGCGATGCGCTCAACATCAGCCTGGAGGCCGGCGAAGCTT
ATGATTGGAACTTGAAAACCGCCGAGCACGCTCACAGTGCGATCCAGGCT
GAGAAGGATGCCAAGAACGCAGAGTACCAACTGGAGGAGCATAACTCAAA
GGCGCAGAAGGAGAATCGAACTTGTCCCGTTTGCAAACAGCTTGAGCAGG
ACATTGAAAAACTGACGCAGCTTCGCAAACAGGACGCCGTGACCGCGGGA
AACTCCGCCAAGAAATGTACCAATAAGAGGGATATAGCGGCTCTTGTCCT
CAACGACATTCATGAGAGCCGCGTGAGATGCGGAGTGGCACGAGCAAAAG
TTCTTAGTGCGATTGCAAAACTCAAGACCCGTTTGGGTCTTTCCTGA
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