Ggra2340.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2340.t1
Unique Name	Ggra2340.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000122_pilon	contig	tig00000122_pilon:378931..380955 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705062.1
Preferred name	YTM1
PFAMs	Dsl1_C,NLE,WD40,Zw10
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11578,ko:K11790
Evalue	9.86e-21
EggNOG OGs	KOG2163@1\|root,KOG2163@2759\|Eukaryota
Description	spindle assembly checkpoint
COG category	S
BRITE	ko00000,ko03036,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2340	Ggra2340	Gracilaria gracilis GNS1m male	gene	tig00000122_pilon 378931..380955 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2340.t1.stop1	Ggra2340.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000122_pilon 378931..378933 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2340.t1.CDS1	Ggra2340.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000122_pilon 378931..380955 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2340.t1.exon1	Ggra2340.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000122_pilon 378931..380955 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2340.t1.start1	Ggra2340.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000122_pilon 380953..380955 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2340.t1	Ggra2340.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000122_pilon 378931..380955 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000122_pilon:378931..380955-
coding sequence from alignment at tig00000122_pilon:378931..380955-

mRNA sequence

>Ggra2340.t1 ID=Ggra2340.t1|Name=Ggra2340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MNERSHLHTRKKEVLDRLSVEIAPFVKVAQALEFSDHIAEASFPQLQQAI
SQLQDTASIALDSSYPQLTRMVSELHERADEATALMKARYMDTFEVRGNS
IIARGRTHVSSNMNSIPVDASSAALAESGMLEEAIQGIIHELTRNQVAKS
LARATVFFESSADFSVNLEWSAGVDDSAELLEFDVDDLETVSEDDIDVMS
QHLDISNAAARALRIYDVFRVHVVGPDYSRPLAVAMQPWFAQQVLPTSVV
INNLRMSTSTFVPPEMLRSRVMAACACARVLQEAMRARGATSFKLSLDRS
ALEEATGAECRAQAVLRARTGIGSFSDARHDDNEMVECPLSATEYIPRNE
RPSDYFPPCLVTRTALTVHDVFVATRMDADKAIRSGSTSIGKALNAAAIE
CLQAYREDVPIQHSSEIRASLRLKALYYNDCLMLAHACRLSLEKFGLSDG
LENQKWSLEEAANKVMVIVRRAAEQRLIENLNAACRNGSLGAYGTLTRIQ
RSSALSGAFNAMREVIHVFSEIVPTELAEIAAATLLQKYLTILIDEVVAL
REISADGCEQINAILGDANNNVISLMSSVKGMENLRGNADPPEIVSQLHR
SQQKLETIREILNARMEDIVHSYRSGKYSDLISRAEVEHFLKAIFEDTPL
RSGFIADLDISLEQESQEWENSNW*

spliced messenger RNA

>Ggra2340.t1 ID=Ggra2340.t1|Name=Ggra2340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000122_pilon:378931..380955- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGAAAGATCCCACTTGCACACCAGGAAGAAAGAGGTTTTGGACCG
TCTATCGGTGGAAATCGCCCCCTTCGTCAAGGTAGCTCAGGCACTTGAGT
TTTCTGATCACATTGCAGAAGCTTCTTTCCCACAACTCCAGCAAGCTATC
TCCCAGTTGCAGGACACTGCAAGTATCGCATTGGACTCTAGCTATCCACA
GTTAACACGAATGGTGAGCGAGCTTCACGAGAGAGCAGACGAAGCCACTG
CGTTGATGAAGGCTAGGTATATGGACACATTTGAGGTTCGCGGCAACTCA
ATTATTGCTCGCGGCCGGACTCATGTTAGCTCAAACATGAATTCTATTCC
TGTGGACGCTTCATCTGCTGCCCTTGCTGAATCCGGGATGTTGGAAGAGG
CTATTCAGGGTATTATACACGAACTAACTCGTAATCAAGTGGCAAAGAGT
CTTGCACGAGCGACGGTTTTCTTTGAGAGCTCTGCCGATTTTAGTGTGAA
CCTAGAATGGTCAGCGGGTGTAGACGATTCTGCAGAGCTCCTAGAGTTTG
ATGTAGACGACCTGGAAACTGTTTCGGAAGACGACATTGACGTCATGTCA
CAACATCTGGATATCTCGAACGCAGCAGCCAGAGCGCTGAGGATCTACGA
CGTATTTCGCGTGCACGTAGTGGGTCCAGATTACTCAAGGCCCCTTGCAG
TCGCCATGCAACCGTGGTTTGCTCAGCAGGTTCTGCCTACATCTGTTGTG
ATCAATAACCTTCGAATGTCTACAAGCACTTTTGTTCCTCCAGAAATGTT
GCGTTCAAGAGTTATGGCTGCTTGTGCTTGTGCGAGAGTTCTTCAGGAGG
CTATGCGGGCTCGTGGGGCTACTTCCTTTAAACTATCGTTAGATAGAAGC
GCGTTGGAGGAAGCCACCGGAGCAGAGTGCAGAGCACAAGCTGTCTTGAG
AGCAAGAACGGGAATCGGTTCCTTTTCGGATGCTAGACATGATGATAATG
AAATGGTTGAATGCCCTCTTTCAGCTACTGAATACATCCCACGTAATGAA
CGCCCCTCAGATTACTTCCCACCTTGTCTTGTCACTCGTACTGCACTGAC
TGTACATGATGTGTTTGTTGCCACGCGGATGGACGCCGACAAAGCCATTC
GAAGCGGCTCGACATCGATTGGGAAGGCTCTCAACGCAGCGGCTATAGAA
TGTTTACAAGCATATCGTGAAGACGTCCCAATACAGCATAGTTCTGAAAT
CCGCGCAAGTCTGAGGCTGAAGGCTTTATACTACAACGATTGTTTAATGC
TTGCTCACGCTTGCCGTCTATCTTTGGAGAAATTCGGACTTTCTGATGGT
CTAGAGAATCAGAAGTGGTCATTGGAAGAAGCGGCCAATAAGGTGATGGT
AATTGTTCGCCGCGCAGCTGAGCAACGATTGATAGAGAACCTAAACGCAG
CATGCCGAAATGGATCCTTAGGAGCCTATGGGACTCTAACTCGTATTCAG
AGGAGTTCAGCTTTGTCTGGAGCATTCAATGCCATGCGGGAAGTTATACA
TGTTTTCTCGGAGATTGTTCCTACTGAGCTTGCTGAAATCGCCGCCGCTA
CATTGCTTCAGAAATACTTGACAATTCTAATCGACGAAGTTGTCGCCCTG
CGAGAAATAAGTGCTGATGGATGTGAGCAAATCAATGCTATTCTGGGAGA
TGCCAATAACAATGTCATCAGTCTGATGAGCTCGGTGAAAGGTATGGAGA
ATTTGAGAGGGAACGCAGATCCTCCAGAGATTGTTTCTCAACTACATCGA
TCTCAGCAGAAACTCGAAACGATTCGCGAGATCCTTAATGCTCGCATGGA
AGACATAGTGCATTCATATCGATCAGGCAAGTATAGTGACTTAATCAGTC
GAGCAGAAGTTGAGCATTTTCTCAAGGCAATCTTTGAAGATACACCTTTA
CGCTCTGGATTTATCGCCGATTTGGACATCAGCCTAGAACAAGAATCGCA
AGAATGGGAAAACAGTAACTGGTGA

protein sequence of Ggra2340.t1

>Ggra2340.t1 ID=Ggra2340.t1|Name=Ggra2340.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MNERSHLHTRKKEVLDRLSVEIAPFVKVAQALEFSDHIAEASFPQLQQAI
SQLQDTASIALDSSYPQLTRMVSELHERADEATALMKARYMDTFEVRGNS
IIARGRTHVSSNMNSIPVDASSAALAESGMLEEAIQGIIHELTRNQVAKS
LARATVFFESSADFSVNLEWSAGVDDSAELLEFDVDDLETVSEDDIDVMS
QHLDISNAAARALRIYDVFRVHVVGPDYSRPLAVAMQPWFAQQVLPTSVV
INNLRMSTSTFVPPEMLRSRVMAACACARVLQEAMRARGATSFKLSLDRS
ALEEATGAECRAQAVLRARTGIGSFSDARHDDNEMVECPLSATEYIPRNE
RPSDYFPPCLVTRTALTVHDVFVATRMDADKAIRSGSTSIGKALNAAAIE
CLQAYREDVPIQHSSEIRASLRLKALYYNDCLMLAHACRLSLEKFGLSDG
LENQKWSLEEAANKVMVIVRRAAEQRLIENLNAACRNGSLGAYGTLTRIQ
RSSALSGAFNAMREVIHVFSEIVPTELAEIAAATLLQKYLTILIDEVVAL
REISADGCEQINAILGDANNNVISLMSSVKGMENLRGNADPPEIVSQLHR
SQQKLETIREILNARMEDIVHSYRSGKYSDLISRAEVEHFLKAIFEDTPL
RSGFIADLDISLEQESQEWENSNW*

mRNA from alignment at tig00000122_pilon:378931..380955-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2340.t1 ID=Ggra2340.t1|Name=Ggra2340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000122_pilon:378931..380955- (Gracilaria gracilis GNS1m male)
ATGAATGAAAGATCCCACTTGCACACCAGGAAGAAAGAGGTTTTGGACCG
TCTATCGGTGGAAATCGCCCCCTTCGTCAAGGTAGCTCAGGCACTTGAGT
TTTCTGATCACATTGCAGAAGCTTCTTTCCCACAACTCCAGCAAGCTATC
TCCCAGTTGCAGGACACTGCAAGTATCGCATTGGACTCTAGCTATCCACA
GTTAACACGAATGGTGAGCGAGCTTCACGAGAGAGCAGACGAAGCCACTG
CGTTGATGAAGGCTAGGTATATGGACACATTTGAGGTTCGCGGCAACTCA
ATTATTGCTCGCGGCCGGACTCATGTTAGCTCAAACATGAATTCTATTCC
TGTGGACGCTTCATCTGCTGCCCTTGCTGAATCCGGGATGTTGGAAGAGG
CTATTCAGGGTATTATACACGAACTAACTCGTAATCAAGTGGCAAAGAGT
CTTGCACGAGCGACGGTTTTCTTTGAGAGCTCTGCCGATTTTAGTGTGAA
CCTAGAATGGTCAGCGGGTGTAGACGATTCTGCAGAGCTCCTAGAGTTTG
ATGTAGACGACCTGGAAACTGTTTCGGAAGACGACATTGACGTCATGTCA
CAACATCTGGATATCTCGAACGCAGCAGCCAGAGCGCTGAGGATCTACGA
CGTATTTCGCGTGCACGTAGTGGGTCCAGATTACTCAAGGCCCCTTGCAG
TCGCCATGCAACCGTGGTTTGCTCAGCAGGTTCTGCCTACATCTGTTGTG
ATCAATAACCTTCGAATGTCTACAAGCACTTTTGTTCCTCCAGAAATGTT
GCGTTCAAGAGTTATGGCTGCTTGTGCTTGTGCGAGAGTTCTTCAGGAGG
CTATGCGGGCTCGTGGGGCTACTTCCTTTAAACTATCGTTAGATAGAAGC
GCGTTGGAGGAAGCCACCGGAGCAGAGTGCAGAGCACAAGCTGTCTTGAG
AGCAAGAACGGGAATCGGTTCCTTTTCGGATGCTAGACATGATGATAATG
AAATGGTTGAATGCCCTCTTTCAGCTACTGAATACATCCCACGTAATGAA
CGCCCCTCAGATTACTTCCCACCTTGTCTTGTCACTCGTACTGCACTGAC
TGTACATGATGTGTTTGTTGCCACGCGGATGGACGCCGACAAAGCCATTC
GAAGCGGCTCGACATCGATTGGGAAGGCTCTCAACGCAGCGGCTATAGAA
TGTTTACAAGCATATCGTGAAGACGTCCCAATACAGCATAGTTCTGAAAT
CCGCGCAAGTCTGAGGCTGAAGGCTTTATACTACAACGATTGTTTAATGC
TTGCTCACGCTTGCCGTCTATCTTTGGAGAAATTCGGACTTTCTGATGGT
CTAGAGAATCAGAAGTGGTCATTGGAAGAAGCGGCCAATAAGGTGATGGT
AATTGTTCGCCGCGCAGCTGAGCAACGATTGATAGAGAACCTAAACGCAG
CATGCCGAAATGGATCCTTAGGAGCCTATGGGACTCTAACTCGTATTCAG
AGGAGTTCAGCTTTGTCTGGAGCATTCAATGCCATGCGGGAAGTTATACA
TGTTTTCTCGGAGATTGTTCCTACTGAGCTTGCTGAAATCGCCGCCGCTA
CATTGCTTCAGAAATACTTGACAATTCTAATCGACGAAGTTGTCGCCCTG
CGAGAAATAAGTGCTGATGGATGTGAGCAAATCAATGCTATTCTGGGAGA
TGCCAATAACAATGTCATCAGTCTGATGAGCTCGGTGAAAGGTATGGAGA
ATTTGAGAGGGAACGCAGATCCTCCAGAGATTGTTTCTCAACTACATCGA
TCTCAGCAGAAACTCGAAACGATTCGCGAGATCCTTAATGCTCGCATGGA
AGACATAGTGCATTCATATCGATCAGGCAAGTATAGTGACTTAATCAGTC
GAGCAGAAGTTGAGCATTTTCTCAAGGCAATCTTTGAAGATACACCTTTA
CGCTCTGGATTTATCGCCGATTTGGACATCAGCCTAGAACAAGAATCGCA
AGAATGGGAAAACAGTAACTGGTGA

Coding sequence (CDS) from alignment at tig00000122_pilon:378931..380955-

>Ggra2340.t1 ID=Ggra2340.t1|Name=Ggra2340.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000122_pilon:378931..380955- (Gracilaria gracilis GNS1m male)
ATGAATGAAAGATCCCACTTGCACACCAGGAAGAAAGAGGTTTTGGACCG
TCTATCGGTGGAAATCGCCCCCTTCGTCAAGGTAGCTCAGGCACTTGAGT
TTTCTGATCACATTGCAGAAGCTTCTTTCCCACAACTCCAGCAAGCTATC
TCCCAGTTGCAGGACACTGCAAGTATCGCATTGGACTCTAGCTATCCACA
GTTAACACGAATGGTGAGCGAGCTTCACGAGAGAGCAGACGAAGCCACTG
CGTTGATGAAGGCTAGGTATATGGACACATTTGAGGTTCGCGGCAACTCA
ATTATTGCTCGCGGCCGGACTCATGTTAGCTCAAACATGAATTCTATTCC
TGTGGACGCTTCATCTGCTGCCCTTGCTGAATCCGGGATGTTGGAAGAGG
CTATTCAGGGTATTATACACGAACTAACTCGTAATCAAGTGGCAAAGAGT
CTTGCACGAGCGACGGTTTTCTTTGAGAGCTCTGCCGATTTTAGTGTGAA
CCTAGAATGGTCAGCGGGTGTAGACGATTCTGCAGAGCTCCTAGAGTTTG
ATGTAGACGACCTGGAAACTGTTTCGGAAGACGACATTGACGTCATGTCA
CAACATCTGGATATCTCGAACGCAGCAGCCAGAGCGCTGAGGATCTACGA
CGTATTTCGCGTGCACGTAGTGGGTCCAGATTACTCAAGGCCCCTTGCAG
TCGCCATGCAACCGTGGTTTGCTCAGCAGGTTCTGCCTACATCTGTTGTG
ATCAATAACCTTCGAATGTCTACAAGCACTTTTGTTCCTCCAGAAATGTT
GCGTTCAAGAGTTATGGCTGCTTGTGCTTGTGCGAGAGTTCTTCAGGAGG
CTATGCGGGCTCGTGGGGCTACTTCCTTTAAACTATCGTTAGATAGAAGC
GCGTTGGAGGAAGCCACCGGAGCAGAGTGCAGAGCACAAGCTGTCTTGAG
AGCAAGAACGGGAATCGGTTCCTTTTCGGATGCTAGACATGATGATAATG
AAATGGTTGAATGCCCTCTTTCAGCTACTGAATACATCCCACGTAATGAA
CGCCCCTCAGATTACTTCCCACCTTGTCTTGTCACTCGTACTGCACTGAC
TGTACATGATGTGTTTGTTGCCACGCGGATGGACGCCGACAAAGCCATTC
GAAGCGGCTCGACATCGATTGGGAAGGCTCTCAACGCAGCGGCTATAGAA
TGTTTACAAGCATATCGTGAAGACGTCCCAATACAGCATAGTTCTGAAAT
CCGCGCAAGTCTGAGGCTGAAGGCTTTATACTACAACGATTGTTTAATGC
TTGCTCACGCTTGCCGTCTATCTTTGGAGAAATTCGGACTTTCTGATGGT
CTAGAGAATCAGAAGTGGTCATTGGAAGAAGCGGCCAATAAGGTGATGGT
AATTGTTCGCCGCGCAGCTGAGCAACGATTGATAGAGAACCTAAACGCAG
CATGCCGAAATGGATCCTTAGGAGCCTATGGGACTCTAACTCGTATTCAG
AGGAGTTCAGCTTTGTCTGGAGCATTCAATGCCATGCGGGAAGTTATACA
TGTTTTCTCGGAGATTGTTCCTACTGAGCTTGCTGAAATCGCCGCCGCTA
CATTGCTTCAGAAATACTTGACAATTCTAATCGACGAAGTTGTCGCCCTG
CGAGAAATAAGTGCTGATGGATGTGAGCAAATCAATGCTATTCTGGGAGA
TGCCAATAACAATGTCATCAGTCTGATGAGCTCGGTGAAAGGTATGGAGA
ATTTGAGAGGGAACGCAGATCCTCCAGAGATTGTTTCTCAACTACATCGA
TCTCAGCAGAAACTCGAAACGATTCGCGAGATCCTTAATGCTCGCATGGA
AGACATAGTGCATTCATATCGATCAGGCAAGTATAGTGACTTAATCAGTC
GAGCAGAAGTTGAGCATTTTCTCAAGGCAATCTTTGAAGATACACCTTTA
CGCTCTGGATTTATCGCCGATTTGGACATCAGCCTAGAACAAGAATCGCA
AGAATGGGAAAACAGTAACTGGTGA