Ggra2339.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2339.t1
Unique NameGgra2339.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:377393..378610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707450.1
PFAMsperoxidase
Max annot lvl2759|Eukaryota
Evalue2.15e-15
EggNOG OGs2DJYV@1|root,2S61P@2759|Eukaryota
DescriptionPeroxidase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2339Ggra2339Gracilaria gracilis GNS1m malegenetig00000122_pilon 377393..378610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2339.t1Ggra2339.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 377393..378610 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2339.t1.start1Ggra2339.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 377393..377395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2339.t1.CDS1Ggra2339.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 377393..377462 +
Ggra2339.t1.CDS2Ggra2339.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 377569..377592 +
Ggra2339.t1.CDS3Ggra2339.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000122_pilon 377772..377785 +
Ggra2339.t1.CDS4Ggra2339.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000122_pilon 377871..377969 +
Ggra2339.t1.CDS5Ggra2339.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000122_pilon 378068..378610 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2339.t1.exon1Ggra2339.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 377393..377462 +
Ggra2339.t1.exon2Ggra2339.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 377569..377592 +
Ggra2339.t1.exon3Ggra2339.t1.exon3Gracilaria gracilis GNS1m maleexontig00000122_pilon 377772..377785 +
Ggra2339.t1.exon4Ggra2339.t1.exon4Gracilaria gracilis GNS1m maleexontig00000122_pilon 377871..377969 +
Ggra2339.t1.exon5Ggra2339.t1.exon5Gracilaria gracilis GNS1m maleexontig00000122_pilon 378068..378610 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2339.t1.intron1Ggra2339.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 377463..377568 +
Ggra2339.t1.intron2Ggra2339.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000122_pilon 377593..377771 +
Ggra2339.t1.intron3Ggra2339.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000122_pilon 377786..377870 +
Ggra2339.t1.intron4Ggra2339.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000122_pilon 377970..378067 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2339.t1.stop1Ggra2339.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 378608..378610 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2339.t1 ID=Ggra2339.t1|Name=Ggra2339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=250bp
MVPMLPQLSDAAVYIDTERFGDKELKVSAINKVKQNKRLTEDQMGAYALN
LNAKQIKSCKKLTKRLNPYLGREDAKDADPAGKSELFKPGASADDMRTAF
EAAGLNGARDVVLFHGAIGSLTDIGQSRAEKLKAVAISDEDEELIEDRDD
VTYGRVTSTKRGAVLVSSNVSQLTLGGEKFSNAYLVAILKAKDPSQLSQR
DKAILGDKAMYAEAQKYAGSNAKFKNDVADLFQHISLLGSSYESLNLQS*
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spliced messenger RNA

>Ggra2339.t1 ID=Ggra2339.t1|Name=Ggra2339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000122_pilon:377393..378610+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCGATGCTCCCTCAATTGTCGGATGCAGCGGTGTATATAGACAC
AGAGAGATTTGGCGATAAGGAGTTGAAAGTTAGCGCCATCAATAAGGTGA
AACAAAATAAACGCTTGACGGAGGACCAAATGGGAGCTTACGCTTTGAAC
TTGAACGCGAAGCAAATCAAGAGCTGCAAGAAGCTCACGAAGCGATTGAA
TCCATACCTCGGCCGGGAAGACGCCAAAGATGCAGATCCGGCGGGGAAAA
GCGAGCTTTTCAAGCCAGGGGCTTCGGCCGATGACATGAGGACAGCTTTT
GAGGCGGCTGGACTCAATGGTGCTCGAGATGTGGTCCTGTTTCATGGAGC
GATTGGGTCGCTTACTGACATCGGCCAGAGTCGAGCTGAGAAATTGAAAG
CTGTGGCTATAAGCGACGAGGACGAAGAGCTAATAGAGGACCGGGATGAC
GTGACGTATGGAAGAGTTACAAGCACAAAGCGGGGAGCGGTTCTGGTTTC
CTCTAATGTCTCTCAATTAACTCTTGGCGGGGAGAAGTTTAGTAATGCGT
ATCTCGTCGCAATTCTGAAAGCAAAAGACCCCAGTCAGCTATCGCAGCGC
GACAAAGCAATTCTCGGGGACAAGGCAATGTATGCCGAAGCACAGAAGTA
TGCAGGGAGCAACGCAAAGTTCAAGAACGATGTTGCTGATTTATTCCAGC
ACATTTCTCTTCTCGGAAGCTCTTACGAGTCACTCAACCTCCAGAGTTAA
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protein sequence of Ggra2339.t1

>Ggra2339.t1 ID=Ggra2339.t1|Name=Ggra2339.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=250bp
MVPMLPQLSDAAVYIDTERFGDKELKVSAINKVKQNKRLTEDQMGAYALN
LNAKQIKSCKKLTKRLNPYLGREDAKDADPAGKSELFKPGASADDMRTAF
EAAGLNGARDVVLFHGAIGSLTDIGQSRAEKLKAVAISDEDEELIEDRDD
VTYGRVTSTKRGAVLVSSNVSQLTLGGEKFSNAYLVAILKAKDPSQLSQR
DKAILGDKAMYAEAQKYAGSNAKFKNDVADLFQHISLLGSSYESLNLQS*
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mRNA from alignment at tig00000122_pilon:377393..378610+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2339.t1 ID=Ggra2339.t1|Name=Ggra2339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000122_pilon:377393..378610+ (Gracilaria gracilis GNS1m male)
ATGGTTCCGATGCTCCCTCAATTGTCGGATGCAGCGGTGTATATAGACAC
AGAGAGATTTGGCGATAAGGGTAGGTTTATGTGCTCTGTGGAGGCGAGGA
AGTGTCTTGCAAACGAAATGCTTCTAAGATGTGTACTTACCGTTCAGATT
GTTATTCATTCATTGCCGCGAGGCAGAGTTGAAAGTTAGCGCCATCAATA
GTAAGTCACTGACTAGTTTCTGATGCCCAGGTCACGTTAAGTGATTCCGG
AGACGGGTCTCTACGCGACTTTCCATGCATGGCAGAAGCAGAAAGAGTTC
TGACTATTGATTCACACCTTCGCTGTTCCTTGGCCGTATATTTGCTGGGG
CTGAACTCATCAATGACGTGATAATCCAGAGGTGAAACAAAATGTACGCA
ATACGTTGACAAGTAGACCAGAGCTCCTTCCGTACTTCTTTCAGTTAACA
CTTCACGATGCATTGACTTTTAATCCAGAAACGCTTGACGGAGGACCAAA
TGGGAGCTTACGCTTTGAACTTGAACGCGAAGCAAATCAAGAGCTGCAAG
AAGCTCACGAAGCGATTGAATCCATACGTGCGCTCCAACGTCAAGACATG
AGCTACGCCGACACTTGCGCTTTTGCCGGAGCGGTTGCTGTGGAGATAAC
AGGGGGCCCTCGTATTGTCATCCAGCTCGGCCGGGAAGACGCCAAAGATG
CAGATCCGGCGGGGAAAAGCGAGCTTTTCAAGCCAGGGGCTTCGGCCGAT
GACATGAGGACAGCTTTTGAGGCGGCTGGACTCAATGGTGCTCGAGATGT
GGTCCTGTTTCATGGAGCGATTGGGTCGCTTACTGACATCGGCCAGAGTC
GAGCTGAGAAATTGAAAGCTGTGGCTATAAGCGACGAGGACGAAGAGCTA
ATAGAGGACCGGGATGACGTGACGTATGGAAGAGTTACAAGCACAAAGCG
GGGAGCGGTTCTGGTTTCCTCTAATGTCTCTCAATTAACTCTTGGCGGGG
AGAAGTTTAGTAATGCGTATCTCGTCGCAATTCTGAAAGCAAAAGACCCC
AGTCAGCTATCGCAGCGCGACAAAGCAATTCTCGGGGACAAGGCAATGTA
TGCCGAAGCACAGAAGTATGCAGGGAGCAACGCAAAGTTCAAGAACGATG
TTGCTGATTTATTCCAGCACATTTCTCTTCTCGGAAGCTCTTACGAGTCA
CTCAACCTCCAGAGTTAA
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Coding sequence (CDS) from alignment at tig00000122_pilon:377393..378610+

>Ggra2339.t1 ID=Ggra2339.t1|Name=Ggra2339.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000122_pilon:377393..378610+ (Gracilaria gracilis GNS1m male)
ATGGTTCCGATGCTCCCTCAATTGTCGGATGCAGCGGTGTATATAGACAC
AGAGAGATTTGGCGATAAGGAGTTGAAAGTTAGCGCCATCAATAAGGTGA
AACAAAATAAACGCTTGACGGAGGACCAAATGGGAGCTTACGCTTTGAAC
TTGAACGCGAAGCAAATCAAGAGCTGCAAGAAGCTCACGAAGCGATTGAA
TCCATACCTCGGCCGGGAAGACGCCAAAGATGCAGATCCGGCGGGGAAAA
GCGAGCTTTTCAAGCCAGGGGCTTCGGCCGATGACATGAGGACAGCTTTT
GAGGCGGCTGGACTCAATGGTGCTCGAGATGTGGTCCTGTTTCATGGAGC
GATTGGGTCGCTTACTGACATCGGCCAGAGTCGAGCTGAGAAATTGAAAG
CTGTGGCTATAAGCGACGAGGACGAAGAGCTAATAGAGGACCGGGATGAC
GTGACGTATGGAAGAGTTACAAGCACAAAGCGGGGAGCGGTTCTGGTTTC
CTCTAATGTCTCTCAATTAACTCTTGGCGGGGAGAAGTTTAGTAATGCGT
ATCTCGTCGCAATTCTGAAAGCAAAAGACCCCAGTCAGCTATCGCAGCGC
GACAAAGCAATTCTCGGGGACAAGGCAATGTATGCCGAAGCACAGAAGTA
TGCAGGGAGCAACGCAAAGTTCAAGAACGATGTTGCTGATTTATTCCAGC
ACATTTCTCTTCTCGGAAGCTCTTACGAGTCACTCAACCTCCAGAGTTAA
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