Ggra2314.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2314.t1
Unique Name	Ggra2314.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000122_pilon	contig	tig00000122_pilon:196936..198183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3702.AT2G27350.5
PFAMs	OTU
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12655
KEGG Pathway	ko04622,map04622
Evalue	1.53e-32
EggNOG OGs	KOG2605@1\|root,KOG2605@2759\|Eukaryota,37PX7@33090\|Viridiplantae,3GGD9@35493\|Streptophyta,3HTK4@3699\|Brassicales
EC	3.4.19.12
Description	OTU domain-containing protein 5-like
COG category	OT
BRITE	ko00000,ko00001,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2314	Ggra2314	Gracilaria gracilis GNS1m male	gene	tig00000122_pilon 196936..198183 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2314.t1.start1	Ggra2314.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000122_pilon 196936..196938 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2314.t1.CDS1	Ggra2314.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000122_pilon 196936..198183 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2314.t1.exon1	Ggra2314.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000122_pilon 196936..198183 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2314.t1.stop1	Ggra2314.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000122_pilon 198181..198183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2314.t1	Ggra2314.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000122_pilon 196936..198183 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000122_pilon:196936..198183+
coding sequence from alignment at tig00000122_pilon:196936..198183+

mRNA sequence

>Ggra2314.t1 ID=Ggra2314.t1|Name=Ggra2314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=416bp
MRVRLDAQGRPRPPVPHPSSAAPPQPLNPVSPPSASAAPAPVVRPPPAHP
APPLRPLSAAAPPALLDDERGSDSGASVATEGYNSEDEHPHARIDLPVRT
QREREVAFVAQLAARGLRVVEMRPDGNCLFRALAHAVWNDAEKHASLRAA
VMQYLLQERDYYSQFVAEDFVRYVRRKRRDGTHGNHLELQAAAELFGRPI
EVYAYSSTPATVIEAWGAAATADTSATPEPIRLSFHRGSHYNALEPFNAP
DKSAKRAAAEAAEHAAWRAAADARATEEEIERAVLALSLVEANREEHVAG
SASSSAAAVPSSVLALINTGYSEESASEAYRVAGHGGLSEMVRYLTSDRF
QSKRLSSVPQRRPRSSKSEYLPVPRGTFSAETRNEPTLDRSFERSLTMDR
DPDDSKSRTSEEGGA*

spliced messenger RNA

>Ggra2314.t1 ID=Ggra2314.t1|Name=Ggra2314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000122_pilon:196936..198183+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTCCGCCTTGACGCCCAGGGTCGACCGCGCCCGCCTGTTCCCCA
CCCTTCCTCCGCCGCGCCGCCGCAACCGCTAAACCCCGTTTCGCCGCCTT
CAGCTTCCGCCGCACCCGCGCCCGTCGTTCGTCCACCACCGGCGCATCCG
GCCCCTCCCCTGCGCCCCCTCTCGGCCGCAGCCCCACCCGCCCTTCTTGA
CGACGAGCGGGGTAGTGACAGCGGCGCCAGTGTCGCCACCGAGGGCTACA
ACTCGGAGGATGAGCATCCGCACGCACGCATCGACCTACCCGTGCGCACG
CAGCGCGAACGCGAGGTCGCCTTCGTCGCGCAGCTGGCCGCGCGCGGGCT
GCGCGTCGTCGAGATGCGTCCGGACGGTAACTGTCTGTTCCGCGCGCTGG
CACACGCCGTGTGGAACGACGCTGAGAAACATGCGTCGCTTCGCGCCGCC
GTCATGCAGTACCTGCTGCAAGAGAGGGACTACTATTCGCAGTTTGTTGC
GGAGGATTTTGTGAGATATGTCAGGCGGAAGAGAAGGGATGGTACGCACG
GCAATCATCTCGAGCTACAGGCTGCTGCCGAATTATTTGGTAGACCCATA
GAGGTTTATGCTTACTCATCTACTCCTGCCACCGTCATTGAGGCGTGGGG
CGCTGCTGCTACTGCTGACACATCGGCTACGCCGGAGCCTATTCGACTCA
GCTTCCATCGCGGAAGCCACTACAACGCCTTGGAACCGTTCAACGCCCCG
GATAAGAGCGCGAAGCGCGCAGCTGCTGAGGCGGCAGAGCACGCTGCATG
GCGTGCTGCCGCTGATGCGCGTGCTACAGAGGAGGAGATTGAACGTGCCG
TACTGGCACTTTCGTTGGTGGAAGCTAATCGCGAAGAGCATGTTGCTGGT
TCTGCCAGTTCGTCCGCTGCTGCTGTGCCCAGCAGCGTATTGGCGCTCAT
TAATACGGGATACTCGGAAGAGAGTGCAAGTGAAGCGTATCGTGTTGCTG
GACATGGCGGCTTGTCGGAGATGGTCCGGTACCTGACCAGTGACCGCTTT
CAATCGAAGCGACTGTCGTCTGTACCTCAACGTCGACCACGCAGTAGCAA
GAGCGAGTACCTGCCAGTTCCCAGGGGAACGTTTTCGGCTGAGACAAGGA
ACGAGCCGACGCTGGATCGTTCCTTTGAGAGATCACTAACTATGGATAGG
GATCCTGACGATTCAAAGTCGCGGACGAGTGAAGAGGGCGGTGCTTAG

protein sequence of Ggra2314.t1

>Ggra2314.t1 ID=Ggra2314.t1|Name=Ggra2314.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=416bp
MRVRLDAQGRPRPPVPHPSSAAPPQPLNPVSPPSASAAPAPVVRPPPAHP
APPLRPLSAAAPPALLDDERGSDSGASVATEGYNSEDEHPHARIDLPVRT
QREREVAFVAQLAARGLRVVEMRPDGNCLFRALAHAVWNDAEKHASLRAA
VMQYLLQERDYYSQFVAEDFVRYVRRKRRDGTHGNHLELQAAAELFGRPI
EVYAYSSTPATVIEAWGAAATADTSATPEPIRLSFHRGSHYNALEPFNAP
DKSAKRAAAEAAEHAAWRAAADARATEEEIERAVLALSLVEANREEHVAG
SASSSAAAVPSSVLALINTGYSEESASEAYRVAGHGGLSEMVRYLTSDRF
QSKRLSSVPQRRPRSSKSEYLPVPRGTFSAETRNEPTLDRSFERSLTMDR
DPDDSKSRTSEEGGA*

mRNA from alignment at tig00000122_pilon:196936..198183+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2314.t1 ID=Ggra2314.t1|Name=Ggra2314.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00000122_pilon:196936..198183+ (Gracilaria gracilis GNS1m male)
ATGCGTGTCCGCCTTGACGCCCAGGGTCGACCGCGCCCGCCTGTTCCCCA
CCCTTCCTCCGCCGCGCCGCCGCAACCGCTAAACCCCGTTTCGCCGCCTT
CAGCTTCCGCCGCACCCGCGCCCGTCGTTCGTCCACCACCGGCGCATCCG
GCCCCTCCCCTGCGCCCCCTCTCGGCCGCAGCCCCACCCGCCCTTCTTGA
CGACGAGCGGGGTAGTGACAGCGGCGCCAGTGTCGCCACCGAGGGCTACA
ACTCGGAGGATGAGCATCCGCACGCACGCATCGACCTACCCGTGCGCACG
CAGCGCGAACGCGAGGTCGCCTTCGTCGCGCAGCTGGCCGCGCGCGGGCT
GCGCGTCGTCGAGATGCGTCCGGACGGTAACTGTCTGTTCCGCGCGCTGG
CACACGCCGTGTGGAACGACGCTGAGAAACATGCGTCGCTTCGCGCCGCC
GTCATGCAGTACCTGCTGCAAGAGAGGGACTACTATTCGCAGTTTGTTGC
GGAGGATTTTGTGAGATATGTCAGGCGGAAGAGAAGGGATGGTACGCACG
GCAATCATCTCGAGCTACAGGCTGCTGCCGAATTATTTGGTAGACCCATA
GAGGTTTATGCTTACTCATCTACTCCTGCCACCGTCATTGAGGCGTGGGG
CGCTGCTGCTACTGCTGACACATCGGCTACGCCGGAGCCTATTCGACTCA
GCTTCCATCGCGGAAGCCACTACAACGCCTTGGAACCGTTCAACGCCCCG
GATAAGAGCGCGAAGCGCGCAGCTGCTGAGGCGGCAGAGCACGCTGCATG
GCGTGCTGCCGCTGATGCGCGTGCTACAGAGGAGGAGATTGAACGTGCCG
TACTGGCACTTTCGTTGGTGGAAGCTAATCGCGAAGAGCATGTTGCTGGT
TCTGCCAGTTCGTCCGCTGCTGCTGTGCCCAGCAGCGTATTGGCGCTCAT
TAATACGGGATACTCGGAAGAGAGTGCAAGTGAAGCGTATCGTGTTGCTG
GACATGGCGGCTTGTCGGAGATGGTCCGGTACCTGACCAGTGACCGCTTT
CAATCGAAGCGACTGTCGTCTGTACCTCAACGTCGACCACGCAGTAGCAA
GAGCGAGTACCTGCCAGTTCCCAGGGGAACGTTTTCGGCTGAGACAAGGA
ACGAGCCGACGCTGGATCGTTCCTTTGAGAGATCACTAACTATGGATAGG
GATCCTGACGATTCAAAGTCGCGGACGAGTGAAGAGGGCGGTGCTTAG

Coding sequence (CDS) from alignment at tig00000122_pilon:196936..198183+

>Ggra2314.t1 ID=Ggra2314.t1|Name=Ggra2314.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00000122_pilon:196936..198183+ (Gracilaria gracilis GNS1m male)
ATGCGTGTCCGCCTTGACGCCCAGGGTCGACCGCGCCCGCCTGTTCCCCA
CCCTTCCTCCGCCGCGCCGCCGCAACCGCTAAACCCCGTTTCGCCGCCTT
CAGCTTCCGCCGCACCCGCGCCCGTCGTTCGTCCACCACCGGCGCATCCG
GCCCCTCCCCTGCGCCCCCTCTCGGCCGCAGCCCCACCCGCCCTTCTTGA
CGACGAGCGGGGTAGTGACAGCGGCGCCAGTGTCGCCACCGAGGGCTACA
ACTCGGAGGATGAGCATCCGCACGCACGCATCGACCTACCCGTGCGCACG
CAGCGCGAACGCGAGGTCGCCTTCGTCGCGCAGCTGGCCGCGCGCGGGCT
GCGCGTCGTCGAGATGCGTCCGGACGGTAACTGTCTGTTCCGCGCGCTGG
CACACGCCGTGTGGAACGACGCTGAGAAACATGCGTCGCTTCGCGCCGCC
GTCATGCAGTACCTGCTGCAAGAGAGGGACTACTATTCGCAGTTTGTTGC
GGAGGATTTTGTGAGATATGTCAGGCGGAAGAGAAGGGATGGTACGCACG
GCAATCATCTCGAGCTACAGGCTGCTGCCGAATTATTTGGTAGACCCATA
GAGGTTTATGCTTACTCATCTACTCCTGCCACCGTCATTGAGGCGTGGGG
CGCTGCTGCTACTGCTGACACATCGGCTACGCCGGAGCCTATTCGACTCA
GCTTCCATCGCGGAAGCCACTACAACGCCTTGGAACCGTTCAACGCCCCG
GATAAGAGCGCGAAGCGCGCAGCTGCTGAGGCGGCAGAGCACGCTGCATG
GCGTGCTGCCGCTGATGCGCGTGCTACAGAGGAGGAGATTGAACGTGCCG
TACTGGCACTTTCGTTGGTGGAAGCTAATCGCGAAGAGCATGTTGCTGGT
TCTGCCAGTTCGTCCGCTGCTGCTGTGCCCAGCAGCGTATTGGCGCTCAT
TAATACGGGATACTCGGAAGAGAGTGCAAGTGAAGCGTATCGTGTTGCTG
GACATGGCGGCTTGTCGGAGATGGTCCGGTACCTGACCAGTGACCGCTTT
CAATCGAAGCGACTGTCGTCTGTACCTCAACGTCGACCACGCAGTAGCAA
GAGCGAGTACCTGCCAGTTCCCAGGGGAACGTTTTCGGCTGAGACAAGGA
ACGAGCCGACGCTGGATCGTTCCTTTGAGAGATCACTAACTATGGATAGG
GATCCTGACGATTCAAAGTCGCGGACGAGTGAAGAGGGCGGTGCTTAG