Ggra2301.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2301.t1
Unique Name	Ggra2301.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	705

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000122_pilon	contig	tig00000122_pilon:67412..69526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2301	Ggra2301	Gracilaria gracilis GNS1m male	gene	tig00000122_pilon 67412..69526 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2301.t1.start1	Ggra2301.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000122_pilon 67412..67414 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2301.t1.CDS1	Ggra2301.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000122_pilon 67412..69526 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2301.t1.exon1	Ggra2301.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000122_pilon 67412..69526 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2301.t1.stop1	Ggra2301.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000122_pilon 69524..69526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2301.t1	Ggra2301.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000122_pilon 67412..69526 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000122_pilon:67412..69526+
coding sequence from alignment at tig00000122_pilon:67412..69526+

mRNA sequence

>Ggra2301.t1 ID=Ggra2301.t1|Name=Ggra2301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp
MSEHPPSASNPLSSSTTVVTPSALIAVVCGAHTELGKFVLRELLRCDNVT
RVHALAELDPRSELRLTAAQAAKLVLHIESLESLERTISAHVPQSHLAFC
TLGFKTKPPEMDAYQFHNYNVAIPKRFVQEMFRINVDRITILCTNKASSR
MSSSTLQRNTPSAADYARHLQVEQRESLSQLKIPGVSVFKVPLMLTDLKD
HFGVKGTAISPIDQIREKIVFKLGIGASNAVHVRDVAKAMVADALEKLDL
QNEQPDLALIFKSHQTAFDELRPNDIIITANEARAAQRSRYVQMRASRRR
SSNVSGYARYQSGEQVTGDKFSPSDLSQSAVPSALPSNTPSASPSAVPSV
PSATPFPAQTPLSPSRFPRIEMEGHTAPTPRSSELQSPTPLAQHIPLYSS
QMHTEHASHPPQSATPSNHAYSERQQSLPPSQNTFQSPQDRAQGPKDTLT
SPRPSTATRYFSHAVAKESFPEEPVPFPAVASSVDALGRQLSRRLTVVHN
NEQMPGTSSSPHRLPRRESAKEIRPPNYQTTDKVPRRKSTPVVSRKGKTS
QSSKSPTSKPRSSPSPAQHPFESDEAQTPTSKSSVAHSSRRRASRSSQQK
YNSGRSAPTTSFHSAYYSGEDGRRRSEVDSLRRTKTTHGRRRSSLPSASA
IISQISLIASRILEATDRPSVKRYRQAYDPNYLPRGDPRRDRGRDRRDTN
VTTI*

spliced messenger RNA

>Ggra2301.t1 ID=Ggra2301.t1|Name=Ggra2301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2115bp|location=Sequence derived from alignment at tig00000122_pilon:67412..69526+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAACATCCCCCGTCTGCCAGCAACCCGCTCTCTTCCTCCACCAC
CGTCGTCACGCCATCCGCGCTCATTGCCGTCGTTTGTGGCGCCCATACCG
AGCTTGGAAAGTTCGTGCTCCGTGAGTTGCTGCGATGCGATAACGTTACT
CGCGTTCATGCACTGGCTGAGCTTGACCCTCGCTCCGAGCTTCGCCTCAC
TGCAGCTCAAGCTGCCAAGCTCGTGTTACACATAGAGTCTTTGGAATCTC
TCGAGCGAACCATTTCGGCTCATGTTCCACAAAGTCACTTGGCGTTCTGC
ACTCTTGGATTCAAAACAAAACCACCGGAAATGGACGCATACCAATTTCA
CAACTACAACGTTGCCATTCCGAAGCGCTTTGTGCAAGAAATGTTTCGCA
TCAATGTCGATCGAATTACCATTCTCTGTACCAACAAGGCATCTTCACGC
ATGTCCAGTTCTACCTTACAACGAAACACCCCTTCAGCAGCTGATTACGC
TCGCCACTTGCAGGTAGAACAACGAGAGTCTCTCAGCCAACTTAAAATAC
CCGGTGTGTCTGTTTTCAAGGTGCCACTCATGTTGACCGATCTCAAGGAC
CACTTCGGCGTCAAAGGCACTGCTATATCTCCAATCGACCAAATTCGTGA
GAAGATAGTGTTCAAGCTTGGTATTGGTGCTTCCAATGCAGTTCATGTTC
GAGATGTTGCCAAGGCAATGGTAGCCGACGCTCTTGAGAAGCTAGACTTA
CAGAATGAGCAACCAGATCTCGCACTCATTTTCAAATCCCATCAAACTGC
CTTCGATGAACTGCGTCCCAACGATATTATTATCACTGCCAATGAAGCAC
GGGCAGCGCAACGTTCCCGCTATGTTCAAATGCGTGCTAGTCGTCGTAGG
TCATCCAACGTTTCAGGATATGCGCGCTACCAATCCGGTGAACAGGTGAC
TGGCGACAAGTTTTCCCCTTCTGATCTTTCGCAATCTGCTGTACCATCTG
CGCTACCTTCGAACACACCATCCGCTTCGCCATCTGCTGTTCCTTCTGTG
CCGTCCGCAACGCCATTCCCCGCCCAAACCCCACTTTCCCCAAGCCGTTT
TCCACGCATTGAAATGGAAGGACACACCGCCCCCACTCCAAGGTCAAGCG
AGCTTCAATCTCCAACGCCATTAGCACAACACATACCACTATATTCCTCA
CAGATGCATACGGAGCATGCATCTCATCCTCCACAATCTGCTACCCCTTC
AAACCATGCATACTCTGAACGACAACAGTCTCTTCCACCCAGTCAGAACA
CATTTCAATCTCCACAAGACAGAGCGCAAGGTCCTAAAGACACACTTACT
TCCCCGAGGCCCAGTACCGCCACCCGTTATTTTTCTCATGCCGTTGCCAA
AGAAAGCTTTCCTGAAGAGCCTGTGCCATTTCCCGCAGTTGCAAGCTCAG
TCGACGCCCTTGGCCGCCAGCTAAGTCGACGATTGACGGTTGTGCACAAT
AACGAACAGATGCCTGGCACGTCAAGCTCACCTCATCGATTGCCTCGAAG
GGAAAGTGCAAAGGAGATTCGCCCACCGAATTATCAAACCACGGACAAGG
TTCCTCGAAGGAAATCTACTCCAGTTGTCTCACGCAAAGGCAAAACTTCA
CAAAGTTCCAAGAGTCCCACCAGCAAGCCTCGTTCGTCGCCCTCTCCGGC
GCAACATCCGTTTGAGAGCGACGAAGCCCAAACCCCGACATCGAAGTCGT
CAGTCGCTCATTCGTCTCGTCGCAGAGCTTCGCGATCTTCACAACAGAAA
TACAACTCTGGTCGATCCGCACCAACGACCTCGTTCCATTCTGCGTATTA
CTCTGGAGAAGACGGTCGACGACGGAGTGAAGTAGATAGCCTCAGGCGTA
CTAAGACCACTCATGGAAGGCGTCGTAGTTCTCTCCCAAGTGCTTCCGCA
ATCATTTCCCAGATCTCACTCATTGCTAGCCGGATTCTCGAGGCCACGGA
CAGACCGTCTGTCAAGCGATATCGACAAGCGTATGACCCTAATTATTTGC
CAAGAGGTGATCCTAGACGAGATCGTGGGAGGGATCGGCGCGACACGAAC
GTGACTACTATTTGA

protein sequence of Ggra2301.t1

>Ggra2301.t1 ID=Ggra2301.t1|Name=Ggra2301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=705bp
MSEHPPSASNPLSSSTTVVTPSALIAVVCGAHTELGKFVLRELLRCDNVT
RVHALAELDPRSELRLTAAQAAKLVLHIESLESLERTISAHVPQSHLAFC
TLGFKTKPPEMDAYQFHNYNVAIPKRFVQEMFRINVDRITILCTNKASSR
MSSSTLQRNTPSAADYARHLQVEQRESLSQLKIPGVSVFKVPLMLTDLKD
HFGVKGTAISPIDQIREKIVFKLGIGASNAVHVRDVAKAMVADALEKLDL
QNEQPDLALIFKSHQTAFDELRPNDIIITANEARAAQRSRYVQMRASRRR
SSNVSGYARYQSGEQVTGDKFSPSDLSQSAVPSALPSNTPSASPSAVPSV
PSATPFPAQTPLSPSRFPRIEMEGHTAPTPRSSELQSPTPLAQHIPLYSS
QMHTEHASHPPQSATPSNHAYSERQQSLPPSQNTFQSPQDRAQGPKDTLT
SPRPSTATRYFSHAVAKESFPEEPVPFPAVASSVDALGRQLSRRLTVVHN
NEQMPGTSSSPHRLPRRESAKEIRPPNYQTTDKVPRRKSTPVVSRKGKTS
QSSKSPTSKPRSSPSPAQHPFESDEAQTPTSKSSVAHSSRRRASRSSQQK
YNSGRSAPTTSFHSAYYSGEDGRRRSEVDSLRRTKTTHGRRRSSLPSASA
IISQISLIASRILEATDRPSVKRYRQAYDPNYLPRGDPRRDRGRDRRDTN
VTTI*

mRNA from alignment at tig00000122_pilon:67412..69526+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2301.t1 ID=Ggra2301.t1|Name=Ggra2301.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2115bp|location=Sequence derived from alignment at tig00000122_pilon:67412..69526+ (Gracilaria gracilis GNS1m male)
ATGTCGGAACATCCCCCGTCTGCCAGCAACCCGCTCTCTTCCTCCACCAC
CGTCGTCACGCCATCCGCGCTCATTGCCGTCGTTTGTGGCGCCCATACCG
AGCTTGGAAAGTTCGTGCTCCGTGAGTTGCTGCGATGCGATAACGTTACT
CGCGTTCATGCACTGGCTGAGCTTGACCCTCGCTCCGAGCTTCGCCTCAC
TGCAGCTCAAGCTGCCAAGCTCGTGTTACACATAGAGTCTTTGGAATCTC
TCGAGCGAACCATTTCGGCTCATGTTCCACAAAGTCACTTGGCGTTCTGC
ACTCTTGGATTCAAAACAAAACCACCGGAAATGGACGCATACCAATTTCA
CAACTACAACGTTGCCATTCCGAAGCGCTTTGTGCAAGAAATGTTTCGCA
TCAATGTCGATCGAATTACCATTCTCTGTACCAACAAGGCATCTTCACGC
ATGTCCAGTTCTACCTTACAACGAAACACCCCTTCAGCAGCTGATTACGC
TCGCCACTTGCAGGTAGAACAACGAGAGTCTCTCAGCCAACTTAAAATAC
CCGGTGTGTCTGTTTTCAAGGTGCCACTCATGTTGACCGATCTCAAGGAC
CACTTCGGCGTCAAAGGCACTGCTATATCTCCAATCGACCAAATTCGTGA
GAAGATAGTGTTCAAGCTTGGTATTGGTGCTTCCAATGCAGTTCATGTTC
GAGATGTTGCCAAGGCAATGGTAGCCGACGCTCTTGAGAAGCTAGACTTA
CAGAATGAGCAACCAGATCTCGCACTCATTTTCAAATCCCATCAAACTGC
CTTCGATGAACTGCGTCCCAACGATATTATTATCACTGCCAATGAAGCAC
GGGCAGCGCAACGTTCCCGCTATGTTCAAATGCGTGCTAGTCGTCGTAGG
TCATCCAACGTTTCAGGATATGCGCGCTACCAATCCGGTGAACAGGTGAC
TGGCGACAAGTTTTCCCCTTCTGATCTTTCGCAATCTGCTGTACCATCTG
CGCTACCTTCGAACACACCATCCGCTTCGCCATCTGCTGTTCCTTCTGTG
CCGTCCGCAACGCCATTCCCCGCCCAAACCCCACTTTCCCCAAGCCGTTT
TCCACGCATTGAAATGGAAGGACACACCGCCCCCACTCCAAGGTCAAGCG
AGCTTCAATCTCCAACGCCATTAGCACAACACATACCACTATATTCCTCA
CAGATGCATACGGAGCATGCATCTCATCCTCCACAATCTGCTACCCCTTC
AAACCATGCATACTCTGAACGACAACAGTCTCTTCCACCCAGTCAGAACA
CATTTCAATCTCCACAAGACAGAGCGCAAGGTCCTAAAGACACACTTACT
TCCCCGAGGCCCAGTACCGCCACCCGTTATTTTTCTCATGCCGTTGCCAA
AGAAAGCTTTCCTGAAGAGCCTGTGCCATTTCCCGCAGTTGCAAGCTCAG
TCGACGCCCTTGGCCGCCAGCTAAGTCGACGATTGACGGTTGTGCACAAT
AACGAACAGATGCCTGGCACGTCAAGCTCACCTCATCGATTGCCTCGAAG
GGAAAGTGCAAAGGAGATTCGCCCACCGAATTATCAAACCACGGACAAGG
TTCCTCGAAGGAAATCTACTCCAGTTGTCTCACGCAAAGGCAAAACTTCA
CAAAGTTCCAAGAGTCCCACCAGCAAGCCTCGTTCGTCGCCCTCTCCGGC
GCAACATCCGTTTGAGAGCGACGAAGCCCAAACCCCGACATCGAAGTCGT
CAGTCGCTCATTCGTCTCGTCGCAGAGCTTCGCGATCTTCACAACAGAAA
TACAACTCTGGTCGATCCGCACCAACGACCTCGTTCCATTCTGCGTATTA
CTCTGGAGAAGACGGTCGACGACGGAGTGAAGTAGATAGCCTCAGGCGTA
CTAAGACCACTCATGGAAGGCGTCGTAGTTCTCTCCCAAGTGCTTCCGCA
ATCATTTCCCAGATCTCACTCATTGCTAGCCGGATTCTCGAGGCCACGGA
CAGACCGTCTGTCAAGCGATATCGACAAGCGTATGACCCTAATTATTTGC
CAAGAGGTGATCCTAGACGAGATCGTGGGAGGGATCGGCGCGACACGAAC
GTGACTACTATTTGA

Coding sequence (CDS) from alignment at tig00000122_pilon:67412..69526+

>Ggra2301.t1 ID=Ggra2301.t1|Name=Ggra2301.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2115bp|location=Sequence derived from alignment at tig00000122_pilon:67412..69526+ (Gracilaria gracilis GNS1m male)
ATGTCGGAACATCCCCCGTCTGCCAGCAACCCGCTCTCTTCCTCCACCAC
CGTCGTCACGCCATCCGCGCTCATTGCCGTCGTTTGTGGCGCCCATACCG
AGCTTGGAAAGTTCGTGCTCCGTGAGTTGCTGCGATGCGATAACGTTACT
CGCGTTCATGCACTGGCTGAGCTTGACCCTCGCTCCGAGCTTCGCCTCAC
TGCAGCTCAAGCTGCCAAGCTCGTGTTACACATAGAGTCTTTGGAATCTC
TCGAGCGAACCATTTCGGCTCATGTTCCACAAAGTCACTTGGCGTTCTGC
ACTCTTGGATTCAAAACAAAACCACCGGAAATGGACGCATACCAATTTCA
CAACTACAACGTTGCCATTCCGAAGCGCTTTGTGCAAGAAATGTTTCGCA
TCAATGTCGATCGAATTACCATTCTCTGTACCAACAAGGCATCTTCACGC
ATGTCCAGTTCTACCTTACAACGAAACACCCCTTCAGCAGCTGATTACGC
TCGCCACTTGCAGGTAGAACAACGAGAGTCTCTCAGCCAACTTAAAATAC
CCGGTGTGTCTGTTTTCAAGGTGCCACTCATGTTGACCGATCTCAAGGAC
CACTTCGGCGTCAAAGGCACTGCTATATCTCCAATCGACCAAATTCGTGA
GAAGATAGTGTTCAAGCTTGGTATTGGTGCTTCCAATGCAGTTCATGTTC
GAGATGTTGCCAAGGCAATGGTAGCCGACGCTCTTGAGAAGCTAGACTTA
CAGAATGAGCAACCAGATCTCGCACTCATTTTCAAATCCCATCAAACTGC
CTTCGATGAACTGCGTCCCAACGATATTATTATCACTGCCAATGAAGCAC
GGGCAGCGCAACGTTCCCGCTATGTTCAAATGCGTGCTAGTCGTCGTAGG
TCATCCAACGTTTCAGGATATGCGCGCTACCAATCCGGTGAACAGGTGAC
TGGCGACAAGTTTTCCCCTTCTGATCTTTCGCAATCTGCTGTACCATCTG
CGCTACCTTCGAACACACCATCCGCTTCGCCATCTGCTGTTCCTTCTGTG
CCGTCCGCAACGCCATTCCCCGCCCAAACCCCACTTTCCCCAAGCCGTTT
TCCACGCATTGAAATGGAAGGACACACCGCCCCCACTCCAAGGTCAAGCG
AGCTTCAATCTCCAACGCCATTAGCACAACACATACCACTATATTCCTCA
CAGATGCATACGGAGCATGCATCTCATCCTCCACAATCTGCTACCCCTTC
AAACCATGCATACTCTGAACGACAACAGTCTCTTCCACCCAGTCAGAACA
CATTTCAATCTCCACAAGACAGAGCGCAAGGTCCTAAAGACACACTTACT
TCCCCGAGGCCCAGTACCGCCACCCGTTATTTTTCTCATGCCGTTGCCAA
AGAAAGCTTTCCTGAAGAGCCTGTGCCATTTCCCGCAGTTGCAAGCTCAG
TCGACGCCCTTGGCCGCCAGCTAAGTCGACGATTGACGGTTGTGCACAAT
AACGAACAGATGCCTGGCACGTCAAGCTCACCTCATCGATTGCCTCGAAG
GGAAAGTGCAAAGGAGATTCGCCCACCGAATTATCAAACCACGGACAAGG
TTCCTCGAAGGAAATCTACTCCAGTTGTCTCACGCAAAGGCAAAACTTCA
CAAAGTTCCAAGAGTCCCACCAGCAAGCCTCGTTCGTCGCCCTCTCCGGC
GCAACATCCGTTTGAGAGCGACGAAGCCCAAACCCCGACATCGAAGTCGT
CAGTCGCTCATTCGTCTCGTCGCAGAGCTTCGCGATCTTCACAACAGAAA
TACAACTCTGGTCGATCCGCACCAACGACCTCGTTCCATTCTGCGTATTA
CTCTGGAGAAGACGGTCGACGACGGAGTGAAGTAGATAGCCTCAGGCGTA
CTAAGACCACTCATGGAAGGCGTCGTAGTTCTCTCCCAAGTGCTTCCGCA
ATCATTTCCCAGATCTCACTCATTGCTAGCCGGATTCTCGAGGCCACGGA
CAGACCGTCTGTCAAGCGATATCGACAAGCGTATGACCCTAATTATTTGC
CAAGAGGTGATCCTAGACGAGATCGTGGGAGGGATCGGCGCGACACGAAC
GTGACTACTATTTGA