Ggra2296.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2296.t1
Unique NameGgra2296.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:55631..56209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S49_260V6.1
PFAMsRibosomal_S7e
Max annot lvl35493|Streptophyta
KEGG koko:K02993
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030312,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.62e-75
EggNOG OGsKOG3320@1|root,KOG3320@2759|Eukaryota,37JH1@33090|Viridiplantae,3G7FK@35493|Streptophyta
DescriptionBelongs to the eukaryotic ribosomal protein eS7 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2296Ggra2296Gracilaria gracilis GNS1m malegenetig00000122_pilon 55631..56209 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2296.t1.start1Ggra2296.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 55631..55633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2296.t1.CDS1Ggra2296.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 55631..56209 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2296.t1.exon1Ggra2296.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 55631..56209 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2296.t1.stop1Ggra2296.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 56207..56209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2296.t1Ggra2296.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 55631..56209 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2296.t1 ID=Ggra2296.t1|Name=Ggra2296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=193bp
MVLHKIQKEKGVDPEPLEKNVAQALADLEASGSEIKAELRELFISAAKEV
ECPGGKTAVVIFVPYRLLQKFHKIQTRLVRELEKKFSGKPVIIVAQRRIL
PREKSGSRLQKQKRPRSRTLTSVHEQILEDLVFPTEIVGKRVRYKVDGSR
LLRVFLDPKDQPNIEYKTATFQSVYKKLTGKDVVFEFPITSE*
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spliced messenger RNA

>Ggra2296.t1 ID=Ggra2296.t1|Name=Ggra2296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000122_pilon:55631..56209+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTCACAAGATCCAGAAGGAGAAGGGCGTCGATCCGGAGCCGTT
GGAGAAGAATGTTGCTCAAGCGCTCGCCGATTTGGAAGCCAGCGGCTCCG
AAATCAAGGCCGAGTTGAGGGAACTTTTCATCTCCGCCGCAAAGGAAGTG
GAATGTCCCGGTGGTAAGACGGCCGTCGTTATCTTCGTTCCGTACCGTCT
TCTTCAAAAATTCCACAAGATTCAAACCAGACTTGTGCGTGAGCTTGAGA
AGAAGTTCTCTGGAAAGCCTGTCATCATTGTAGCGCAGCGTCGTATCTTG
CCGCGTGAGAAGAGTGGAAGTCGTTTGCAGAAGCAGAAGAGACCGCGTTC
TCGTACCTTGACCAGTGTTCATGAGCAGATCTTGGAAGATCTTGTGTTCC
CCACCGAGATTGTTGGCAAGCGCGTGCGTTACAAGGTTGATGGCTCTCGT
TTGTTGAGAGTTTTCTTGGATCCGAAGGATCAACCCAATATCGAATACAA
GACTGCCACCTTCCAGTCCGTGTACAAGAAGCTCACTGGAAAGGATGTTG
TGTTTGAGTTCCCCATCACATCGGAGTAA
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protein sequence of Ggra2296.t1

>Ggra2296.t1 ID=Ggra2296.t1|Name=Ggra2296.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MVLHKIQKEKGVDPEPLEKNVAQALADLEASGSEIKAELRELFISAAKEV
ECPGGKTAVVIFVPYRLLQKFHKIQTRLVRELEKKFSGKPVIIVAQRRIL
PREKSGSRLQKQKRPRSRTLTSVHEQILEDLVFPTEIVGKRVRYKVDGSR
LLRVFLDPKDQPNIEYKTATFQSVYKKLTGKDVVFEFPITSE*
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mRNA from alignment at tig00000122_pilon:55631..56209+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2296.t1 ID=Ggra2296.t1|Name=Ggra2296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000122_pilon:55631..56209+ (Gracilaria gracilis GNS1m male)
ATGGTGCTTCACAAGATCCAGAAGGAGAAGGGCGTCGATCCGGAGCCGTT
GGAGAAGAATGTTGCTCAAGCGCTCGCCGATTTGGAAGCCAGCGGCTCCG
AAATCAAGGCCGAGTTGAGGGAACTTTTCATCTCCGCCGCAAAGGAAGTG
GAATGTCCCGGTGGTAAGACGGCCGTCGTTATCTTCGTTCCGTACCGTCT
TCTTCAAAAATTCCACAAGATTCAAACCAGACTTGTGCGTGAGCTTGAGA
AGAAGTTCTCTGGAAAGCCTGTCATCATTGTAGCGCAGCGTCGTATCTTG
CCGCGTGAGAAGAGTGGAAGTCGTTTGCAGAAGCAGAAGAGACCGCGTTC
TCGTACCTTGACCAGTGTTCATGAGCAGATCTTGGAAGATCTTGTGTTCC
CCACCGAGATTGTTGGCAAGCGCGTGCGTTACAAGGTTGATGGCTCTCGT
TTGTTGAGAGTTTTCTTGGATCCGAAGGATCAACCCAATATCGAATACAA
GACTGCCACCTTCCAGTCCGTGTACAAGAAGCTCACTGGAAAGGATGTTG
TGTTTGAGTTCCCCATCACATCGGAGTAA
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Coding sequence (CDS) from alignment at tig00000122_pilon:55631..56209+

>Ggra2296.t1 ID=Ggra2296.t1|Name=Ggra2296.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00000122_pilon:55631..56209+ (Gracilaria gracilis GNS1m male)
ATGGTGCTTCACAAGATCCAGAAGGAGAAGGGCGTCGATCCGGAGCCGTT
GGAGAAGAATGTTGCTCAAGCGCTCGCCGATTTGGAAGCCAGCGGCTCCG
AAATCAAGGCCGAGTTGAGGGAACTTTTCATCTCCGCCGCAAAGGAAGTG
GAATGTCCCGGTGGTAAGACGGCCGTCGTTATCTTCGTTCCGTACCGTCT
TCTTCAAAAATTCCACAAGATTCAAACCAGACTTGTGCGTGAGCTTGAGA
AGAAGTTCTCTGGAAAGCCTGTCATCATTGTAGCGCAGCGTCGTATCTTG
CCGCGTGAGAAGAGTGGAAGTCGTTTGCAGAAGCAGAAGAGACCGCGTTC
TCGTACCTTGACCAGTGTTCATGAGCAGATCTTGGAAGATCTTGTGTTCC
CCACCGAGATTGTTGGCAAGCGCGTGCGTTACAAGGTTGATGGCTCTCGT
TTGTTGAGAGTTTTCTTGGATCCGAAGGATCAACCCAATATCGAATACAA
GACTGCCACCTTCCAGTCCGTGTACAAGAAGCTCACTGGAAAGGATGTTG
TGTTTGAGTTCCCCATCACATCGGAGTAA
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