Ggra2255.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2255.t1
Unique Name	Ggra2255.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:933171..934571 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2255	Ggra2255	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 933171..934571 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2255.t1.start1	Ggra2255.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 933171..933173 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2255.t1.CDS1	Ggra2255.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 933171..934571 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2255.t1.exon1	Ggra2255.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 933171..934571 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2255.t1.stop1	Ggra2255.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 934569..934571 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2255.t1	Ggra2255.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 933171..934571 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:933171..934571+
coding sequence from alignment at tig00000900_pilon:933171..934571+

mRNA sequence

>Ggra2255.t1 ID=Ggra2255.t1|Name=Ggra2255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MVGYLSSKNRTILTAIPLPPSDFINISRENQKPGQYVFGQNSFVPDTSLS
NSGLLSKQLDGATEEIILGFLSIIMIMAITEVVLTILSSQRQNQEPERNE
LAHLAIKVDGLLHFNGKWMVSRENCASSRRREKEIMMAVFAVLLATVIFV
MDMGAVVLTQPQDYPSKQYAYNLRGSHPIGTTLGLGKFLRRTARERPCIT
PVFSASNPFRNFSISACHTLNLEIAHNKFNDSVKSVKISSLFHHGGSDHL
ISFGNASIEIKTRAVVYGANGGTRRLLFPGLHENYMGFTYYLHQVVIYMI
LEESCNSKHSTKTCEELVSEHRSVAEPVNRTIGLWTTRTGKVKREVHGLE
TTLTAEITKPWLTVYKSVGPLMTAELIEEIEGRGLYSGIATEIEEEGIPG
LLVQQRRPLGVFGMLLGTVSLVLVLFGLKRILRPVYLADRAWENFERTVL
NHLELEHRTSSGSTIF*

spliced messenger RNA

>Ggra2255.t1 ID=Ggra2255.t1|Name=Ggra2255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000900_pilon:933171..934571+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGTTACTTGTCATCGAAGAATCGCACAATTCTCACAGCTATCCC
TCTACCACCTTCGGATTTCATTAACATATCTAGGGAAAACCAAAAGCCAG
GACAGTATGTCTTTGGACAGAACAGTTTTGTACCTGATACATCTCTCAGC
AACTCTGGTTTGTTATCAAAACAGCTTGACGGAGCCACAGAGGAGATTAT
CTTGGGATTTCTTTCGATCATAATGATAATGGCGATCACAGAGGTTGTGT
TGACTATCCTTTCGAGTCAGCGACAGAACCAAGAGCCTGAGAGAAACGAG
TTAGCACATCTTGCCATCAAAGTAGATGGGTTGCTTCATTTCAATGGGAA
GTGGATGGTTTCCCGAGAAAATTGTGCATCGTCTCGCAGACGAGAGAAAG
AAATAATGATGGCAGTATTTGCTGTCCTGCTTGCCACTGTCATATTTGTC
ATGGATATGGGGGCTGTCGTTTTGACACAACCGCAGGACTACCCAAGCAA
GCAATATGCTTACAACTTGAGAGGAAGTCACCCGATTGGTACCACGCTTG
GTTTGGGAAAGTTTTTACGTAGGACTGCCAGAGAGCGCCCATGTATCACC
CCAGTCTTCTCCGCATCGAATCCCTTTCGCAACTTTTCAATCAGTGCATG
TCATACTCTAAATCTTGAAATCGCTCACAACAAGTTCAACGACAGTGTAA
AGTCTGTGAAGATAAGTTCGTTGTTCCATCACGGTGGAAGTGATCACCTT
ATTTCTTTTGGGAATGCTAGTATCGAAATCAAGACGCGGGCTGTTGTGTA
CGGAGCTAATGGAGGTACGAGGAGACTGCTCTTCCCCGGTTTGCACGAAA
ACTATATGGGGTTCACCTATTACTTGCATCAAGTAGTGATATACATGATC
TTGGAAGAAAGCTGCAATAGTAAGCACAGTACTAAGACATGTGAAGAACT
CGTCTCTGAGCACAGAAGCGTAGCAGAACCAGTCAACAGAACGATTGGTT
TATGGACAACCAGGACTGGTAAAGTGAAGAGAGAGGTGCACGGCTTGGAG
ACAACCTTAACTGCCGAAATAACCAAGCCATGGTTAACGGTGTACAAGAG
TGTTGGACCGTTAATGACAGCAGAGCTTATTGAAGAAATTGAAGGTCGTG
GTTTGTACTCTGGTATTGCAACCGAAATAGAAGAAGAGGGTATACCAGGT
CTTCTGGTTCAGCAACGGAGGCCACTGGGAGTGTTTGGAATGCTCCTTGG
TACAGTATCTCTAGTACTGGTCCTGTTTGGGCTGAAGCGAATCCTTCGGC
CTGTTTATCTTGCTGATCGCGCTTGGGAGAACTTTGAAAGAACCGTTCTG
AACCACCTCGAACTGGAGCACAGAACTTCTTCTGGTTCGACCATTTTTTG
A

protein sequence of Ggra2255.t1

>Ggra2255.t1 ID=Ggra2255.t1|Name=Ggra2255.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MVGYLSSKNRTILTAIPLPPSDFINISRENQKPGQYVFGQNSFVPDTSLS
NSGLLSKQLDGATEEIILGFLSIIMIMAITEVVLTILSSQRQNQEPERNE
LAHLAIKVDGLLHFNGKWMVSRENCASSRRREKEIMMAVFAVLLATVIFV
MDMGAVVLTQPQDYPSKQYAYNLRGSHPIGTTLGLGKFLRRTARERPCIT
PVFSASNPFRNFSISACHTLNLEIAHNKFNDSVKSVKISSLFHHGGSDHL
ISFGNASIEIKTRAVVYGANGGTRRLLFPGLHENYMGFTYYLHQVVIYMI
LEESCNSKHSTKTCEELVSEHRSVAEPVNRTIGLWTTRTGKVKREVHGLE
TTLTAEITKPWLTVYKSVGPLMTAELIEEIEGRGLYSGIATEIEEEGIPG
LLVQQRRPLGVFGMLLGTVSLVLVLFGLKRILRPVYLADRAWENFERTVL
NHLELEHRTSSGSTIF*

mRNA from alignment at tig00000900_pilon:933171..934571+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2255.t1 ID=Ggra2255.t1|Name=Ggra2255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000900_pilon:933171..934571+ (Gracilaria gracilis GNS1m male)
ATGGTGGGTTACTTGTCATCGAAGAATCGCACAATTCTCACAGCTATCCC
TCTACCACCTTCGGATTTCATTAACATATCTAGGGAAAACCAAAAGCCAG
GACAGTATGTCTTTGGACAGAACAGTTTTGTACCTGATACATCTCTCAGC
AACTCTGGTTTGTTATCAAAACAGCTTGACGGAGCCACAGAGGAGATTAT
CTTGGGATTTCTTTCGATCATAATGATAATGGCGATCACAGAGGTTGTGT
TGACTATCCTTTCGAGTCAGCGACAGAACCAAGAGCCTGAGAGAAACGAG
TTAGCACATCTTGCCATCAAAGTAGATGGGTTGCTTCATTTCAATGGGAA
GTGGATGGTTTCCCGAGAAAATTGTGCATCGTCTCGCAGACGAGAGAAAG
AAATAATGATGGCAGTATTTGCTGTCCTGCTTGCCACTGTCATATTTGTC
ATGGATATGGGGGCTGTCGTTTTGACACAACCGCAGGACTACCCAAGCAA
GCAATATGCTTACAACTTGAGAGGAAGTCACCCGATTGGTACCACGCTTG
GTTTGGGAAAGTTTTTACGTAGGACTGCCAGAGAGCGCCCATGTATCACC
CCAGTCTTCTCCGCATCGAATCCCTTTCGCAACTTTTCAATCAGTGCATG
TCATACTCTAAATCTTGAAATCGCTCACAACAAGTTCAACGACAGTGTAA
AGTCTGTGAAGATAAGTTCGTTGTTCCATCACGGTGGAAGTGATCACCTT
ATTTCTTTTGGGAATGCTAGTATCGAAATCAAGACGCGGGCTGTTGTGTA
CGGAGCTAATGGAGGTACGAGGAGACTGCTCTTCCCCGGTTTGCACGAAA
ACTATATGGGGTTCACCTATTACTTGCATCAAGTAGTGATATACATGATC
TTGGAAGAAAGCTGCAATAGTAAGCACAGTACTAAGACATGTGAAGAACT
CGTCTCTGAGCACAGAAGCGTAGCAGAACCAGTCAACAGAACGATTGGTT
TATGGACAACCAGGACTGGTAAAGTGAAGAGAGAGGTGCACGGCTTGGAG
ACAACCTTAACTGCCGAAATAACCAAGCCATGGTTAACGGTGTACAAGAG
TGTTGGACCGTTAATGACAGCAGAGCTTATTGAAGAAATTGAAGGTCGTG
GTTTGTACTCTGGTATTGCAACCGAAATAGAAGAAGAGGGTATACCAGGT
CTTCTGGTTCAGCAACGGAGGCCACTGGGAGTGTTTGGAATGCTCCTTGG
TACAGTATCTCTAGTACTGGTCCTGTTTGGGCTGAAGCGAATCCTTCGGC
CTGTTTATCTTGCTGATCGCGCTTGGGAGAACTTTGAAAGAACCGTTCTG
AACCACCTCGAACTGGAGCACAGAACTTCTTCTGGTTCGACCATTTTTTG
A

Coding sequence (CDS) from alignment at tig00000900_pilon:933171..934571+

>Ggra2255.t1 ID=Ggra2255.t1|Name=Ggra2255.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000900_pilon:933171..934571+ (Gracilaria gracilis GNS1m male)
ATGGTGGGTTACTTGTCATCGAAGAATCGCACAATTCTCACAGCTATCCC
TCTACCACCTTCGGATTTCATTAACATATCTAGGGAAAACCAAAAGCCAG
GACAGTATGTCTTTGGACAGAACAGTTTTGTACCTGATACATCTCTCAGC
AACTCTGGTTTGTTATCAAAACAGCTTGACGGAGCCACAGAGGAGATTAT
CTTGGGATTTCTTTCGATCATAATGATAATGGCGATCACAGAGGTTGTGT
TGACTATCCTTTCGAGTCAGCGACAGAACCAAGAGCCTGAGAGAAACGAG
TTAGCACATCTTGCCATCAAAGTAGATGGGTTGCTTCATTTCAATGGGAA
GTGGATGGTTTCCCGAGAAAATTGTGCATCGTCTCGCAGACGAGAGAAAG
AAATAATGATGGCAGTATTTGCTGTCCTGCTTGCCACTGTCATATTTGTC
ATGGATATGGGGGCTGTCGTTTTGACACAACCGCAGGACTACCCAAGCAA
GCAATATGCTTACAACTTGAGAGGAAGTCACCCGATTGGTACCACGCTTG
GTTTGGGAAAGTTTTTACGTAGGACTGCCAGAGAGCGCCCATGTATCACC
CCAGTCTTCTCCGCATCGAATCCCTTTCGCAACTTTTCAATCAGTGCATG
TCATACTCTAAATCTTGAAATCGCTCACAACAAGTTCAACGACAGTGTAA
AGTCTGTGAAGATAAGTTCGTTGTTCCATCACGGTGGAAGTGATCACCTT
ATTTCTTTTGGGAATGCTAGTATCGAAATCAAGACGCGGGCTGTTGTGTA
CGGAGCTAATGGAGGTACGAGGAGACTGCTCTTCCCCGGTTTGCACGAAA
ACTATATGGGGTTCACCTATTACTTGCATCAAGTAGTGATATACATGATC
TTGGAAGAAAGCTGCAATAGTAAGCACAGTACTAAGACATGTGAAGAACT
CGTCTCTGAGCACAGAAGCGTAGCAGAACCAGTCAACAGAACGATTGGTT
TATGGACAACCAGGACTGGTAAAGTGAAGAGAGAGGTGCACGGCTTGGAG
ACAACCTTAACTGCCGAAATAACCAAGCCATGGTTAACGGTGTACAAGAG
TGTTGGACCGTTAATGACAGCAGAGCTTATTGAAGAAATTGAAGGTCGTG
GTTTGTACTCTGGTATTGCAACCGAAATAGAAGAAGAGGGTATACCAGGT
CTTCTGGTTCAGCAACGGAGGCCACTGGGAGTGTTTGGAATGCTCCTTGG
TACAGTATCTCTAGTACTGGTCCTGTTTGGGCTGAAGCGAATCCTTCGGC
CTGTTTATCTTGCTGATCGCGCTTGGGAGAACTTTGAAAGAACCGTTCTG
AACCACCTCGAACTGGAGCACAGAACTTCTTCTGGTTCGACCATTTTTTG
A