Ggra2206.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2206.t2
Unique NameGgra2206.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:649312..650250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2206Ggra2206Gracilaria gracilis GNS1m malegenetig00000900_pilon 649312..650301 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2206.t2.stop1Ggra2206.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 649312..649314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2206.t2.CDS1Ggra2206.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 649312..650250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2206.t2.exon1Ggra2206.t2.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 649312..650250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2206.t2.start1Ggra2206.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 650248..650250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2206.t2Ggra2206.t2Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 649312..650250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2206.t2 ID=Ggra2206.t2|Name=Ggra2206.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
LSSEINSLSDYQLKKLTRSNTKKNVGGKKNRFLSQLERVCRRLELLNVTP
QVEPETQTHSLHAIPIVNPDGSTFKSLTNKKEVSLQINENEQHQGQHEEE
LEQLESDQFRIPIRTQTPRFCKDAPFSESTETHNSEDSATPEDITEDDDF
DIEPATVGSTNDDAISTATTTKSLRSVRISTEVTILGFSPRSKRGEPMSL
SVSTMRRTEHPTRNGKSFLLRPRSTKENRFPCAMSALDRAKRMEEIEALS
RDDTNSTPQRAMDKSSSGSSPVDRSNPVLLYAKGSPRRPQSRTNGRFLGG
SRKPEGIEAEKK*
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spliced messenger RNA

>Ggra2206.t2 ID=Ggra2206.t2|Name=Ggra2206.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000900_pilon:649312..650250- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCGAGCGAAATAAACTCTTTGTCCGACTATCAGCTTAAGAAACTTAC
TCGATCCAACACCAAAAAGAATGTGGGCGGAAAGAAAAACAGGTTCTTGT
CACAGTTGGAGCGTGTGTGTCGACGTTTGGAACTTCTCAACGTCACCCCA
CAAGTGGAGCCAGAGACGCAAACCCACTCCTTGCATGCAATACCAATCGT
CAATCCCGACGGTTCAACCTTCAAATCCCTGACTAACAAAAAAGAAGTGT
CACTGCAAATCAATGAAAATGAGCAACACCAAGGCCAACATGAAGAAGAG
CTTGAACAACTTGAAAGTGACCAGTTCCGAATCCCGATAAGAACACAGAC
GCCCAGGTTTTGCAAAGACGCACCTTTTTCCGAAAGCACCGAAACCCACA
ACTCAGAAGACTCTGCCACCCCCGAAGACATCACGGAAGACGATGACTTT
GATATTGAACCGGCTACCGTTGGTTCCACAAATGACGATGCGATATCCAC
CGCCACCACAACAAAGTCACTTCGCTCGGTCCGCATTTCCACGGAGGTAA
CAATCCTAGGCTTTAGTCCACGAAGCAAAAGGGGTGAGCCAATGTCACTC
TCCGTTTCTACCATGCGGCGAACAGAGCACCCAACCAGAAATGGGAAGTC
GTTTCTTCTTCGCCCACGAAGTACTAAAGAAAACCGCTTTCCGTGCGCAA
TGAGTGCTCTGGACAGGGCGAAGAGAATGGAAGAGATTGAGGCTCTTTCT
CGAGACGACACCAACTCTACACCTCAAAGGGCTATGGACAAAAGCAGTTC
TGGTTCTAGTCCTGTTGATAGGTCAAACCCCGTTCTTTTGTACGCAAAAG
GGTCGCCCAGGAGACCACAGTCCCGAACTAACGGTCGATTTTTGGGCGGT
TCTAGAAAGCCAGAAGGTATAGAAGCGGAGAAGAAATGA
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protein sequence of Ggra2206.t2

>Ggra2206.t2 ID=Ggra2206.t2|Name=Ggra2206.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
LSSEINSLSDYQLKKLTRSNTKKNVGGKKNRFLSQLERVCRRLELLNVTP
QVEPETQTHSLHAIPIVNPDGSTFKSLTNKKEVSLQINENEQHQGQHEEE
LEQLESDQFRIPIRTQTPRFCKDAPFSESTETHNSEDSATPEDITEDDDF
DIEPATVGSTNDDAISTATTTKSLRSVRISTEVTILGFSPRSKRGEPMSL
SVSTMRRTEHPTRNGKSFLLRPRSTKENRFPCAMSALDRAKRMEEIEALS
RDDTNSTPQRAMDKSSSGSSPVDRSNPVLLYAKGSPRRPQSRTNGRFLGG
SRKPEGIEAEKK*
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mRNA from alignment at tig00000900_pilon:649312..650250-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2206.t2 ID=Ggra2206.t2|Name=Ggra2206.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000900_pilon:649312..650250- (Gracilaria gracilis GNS1m male)
TTGTCGAGCGAAATAAACTCTTTGTCCGACTATCAGCTTAAGAAACTTAC
TCGATCCAACACCAAAAAGAATGTGGGCGGAAAGAAAAACAGGTTCTTGT
CACAGTTGGAGCGTGTGTGTCGACGTTTGGAACTTCTCAACGTCACCCCA
CAAGTGGAGCCAGAGACGCAAACCCACTCCTTGCATGCAATACCAATCGT
CAATCCCGACGGTTCAACCTTCAAATCCCTGACTAACAAAAAAGAAGTGT
CACTGCAAATCAATGAAAATGAGCAACACCAAGGCCAACATGAAGAAGAG
CTTGAACAACTTGAAAGTGACCAGTTCCGAATCCCGATAAGAACACAGAC
GCCCAGGTTTTGCAAAGACGCACCTTTTTCCGAAAGCACCGAAACCCACA
ACTCAGAAGACTCTGCCACCCCCGAAGACATCACGGAAGACGATGACTTT
GATATTGAACCGGCTACCGTTGGTTCCACAAATGACGATGCGATATCCAC
CGCCACCACAACAAAGTCACTTCGCTCGGTCCGCATTTCCACGGAGGTAA
CAATCCTAGGCTTTAGTCCACGAAGCAAAAGGGGTGAGCCAATGTCACTC
TCCGTTTCTACCATGCGGCGAACAGAGCACCCAACCAGAAATGGGAAGTC
GTTTCTTCTTCGCCCACGAAGTACTAAAGAAAACCGCTTTCCGTGCGCAA
TGAGTGCTCTGGACAGGGCGAAGAGAATGGAAGAGATTGAGGCTCTTTCT
CGAGACGACACCAACTCTACACCTCAAAGGGCTATGGACAAAAGCAGTTC
TGGTTCTAGTCCTGTTGATAGGTCAAACCCCGTTCTTTTGTACGCAAAAG
GGTCGCCCAGGAGACCACAGTCCCGAACTAACGGTCGATTTTTGGGCGGT
TCTAGAAAGCCAGAAGGTATAGAAGCGGAGAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:649312..650250-

>Ggra2206.t2 ID=Ggra2206.t2|Name=Ggra2206.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000900_pilon:649312..650250- (Gracilaria gracilis GNS1m male)
TTGTCGAGCGAAATAAACTCTTTGTCCGACTATCAGCTTAAGAAACTTAC
TCGATCCAACACCAAAAAGAATGTGGGCGGAAAGAAAAACAGGTTCTTGT
CACAGTTGGAGCGTGTGTGTCGACGTTTGGAACTTCTCAACGTCACCCCA
CAAGTGGAGCCAGAGACGCAAACCCACTCCTTGCATGCAATACCAATCGT
CAATCCCGACGGTTCAACCTTCAAATCCCTGACTAACAAAAAAGAAGTGT
CACTGCAAATCAATGAAAATGAGCAACACCAAGGCCAACATGAAGAAGAG
CTTGAACAACTTGAAAGTGACCAGTTCCGAATCCCGATAAGAACACAGAC
GCCCAGGTTTTGCAAAGACGCACCTTTTTCCGAAAGCACCGAAACCCACA
ACTCAGAAGACTCTGCCACCCCCGAAGACATCACGGAAGACGATGACTTT
GATATTGAACCGGCTACCGTTGGTTCCACAAATGACGATGCGATATCCAC
CGCCACCACAACAAAGTCACTTCGCTCGGTCCGCATTTCCACGGAGGTAA
CAATCCTAGGCTTTAGTCCACGAAGCAAAAGGGGTGAGCCAATGTCACTC
TCCGTTTCTACCATGCGGCGAACAGAGCACCCAACCAGAAATGGGAAGTC
GTTTCTTCTTCGCCCACGAAGTACTAAAGAAAACCGCTTTCCGTGCGCAA
TGAGTGCTCTGGACAGGGCGAAGAGAATGGAAGAGATTGAGGCTCTTTCT
CGAGACGACACCAACTCTACACCTCAAAGGGCTATGGACAAAAGCAGTTC
TGGTTCTAGTCCTGTTGATAGGTCAAACCCCGTTCTTTTGTACGCAAAAG
GGTCGCCCAGGAGACCACAGTCCCGAACTAACGGTCGATTTTTGGGCGGT
TCTAGAAAGCCAGAAGGTATAGAAGCGGAGAAGAAATGA
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