Ggra2192.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2192.t1
Unique NameGgra2192.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:601979..602353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705436.1
PFAMsHistone
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Evalue6.69e-55
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2192Ggra2192Gracilaria gracilis GNS1m malegenetig00000900_pilon 601979..602353 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2192.t1.stop1Ggra2192.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 601979..601981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2192.t1.CDS1Ggra2192.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 601979..602353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2192.t1.exon1Ggra2192.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 601979..602353 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2192.t1.start1Ggra2192.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 602351..602353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2192.t1Ggra2192.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 601979..602353 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2192.t1 ID=Ggra2192.t1|Name=Ggra2192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=125bp
MPPKGKSVPVAEKKVAKKGMAGGTEKTTRKKKRSESYSIYIYKVLKQVHP
DTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRL
LLPGELAKHAVSEGTKAVTKYSSS*
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spliced messenger RNA

>Ggra2192.t1 ID=Ggra2192.t1|Name=Ggra2192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000900_pilon:601979..602353- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCAAGGGTAAAAGTGTTCCTGTCGCCGAGAAGAAGGTCGCCAA
GAAGGGCATGGCCGGAGGCACCGAGAAGACTACCAGGAAGAAGAAGCGCA
GTGAATCATACTCTATCTACATCTACAAGGTGTTGAAACAAGTTCATCCG
GATACTGGTATCTCCTCTAAGGCCATGAGCATCATGAATTCGTTCGTCGC
TGATCTTTTCGAAAGGATCGCAACTGAAGCTGCGAAGCTCGCATCTTACA
ACAACACGAAGACGCTCACCTCTCGAGAAATTCAGACCGCTGTCCGTCTC
CTCCTCCCCGGAGAGCTTGCCAAGCATGCTGTGTCTGAAGGAACCAAGGC
TGTCACTAAGTACAGCTCAAGCTAA
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protein sequence of Ggra2192.t1

>Ggra2192.t1 ID=Ggra2192.t1|Name=Ggra2192.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=125bp
MPPKGKSVPVAEKKVAKKGMAGGTEKTTRKKKRSESYSIYIYKVLKQVHP
DTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRL
LLPGELAKHAVSEGTKAVTKYSSS*
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mRNA from alignment at tig00000900_pilon:601979..602353-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2192.t1 ID=Ggra2192.t1|Name=Ggra2192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000900_pilon:601979..602353- (Gracilaria gracilis GNS1m male)
ATGCCTCCCAAGGGTAAAAGTGTTCCTGTCGCCGAGAAGAAGGTCGCCAA
GAAGGGCATGGCCGGAGGCACCGAGAAGACTACCAGGAAGAAGAAGCGCA
GTGAATCATACTCTATCTACATCTACAAGGTGTTGAAACAAGTTCATCCG
GATACTGGTATCTCCTCTAAGGCCATGAGCATCATGAATTCGTTCGTCGC
TGATCTTTTCGAAAGGATCGCAACTGAAGCTGCGAAGCTCGCATCTTACA
ACAACACGAAGACGCTCACCTCTCGAGAAATTCAGACCGCTGTCCGTCTC
CTCCTCCCCGGAGAGCTTGCCAAGCATGCTGTGTCTGAAGGAACCAAGGC
TGTCACTAAGTACAGCTCAAGCTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:601979..602353-

>Ggra2192.t1 ID=Ggra2192.t1|Name=Ggra2192.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=375bp|location=Sequence derived from alignment at tig00000900_pilon:601979..602353- (Gracilaria gracilis GNS1m male)
ATGCCTCCCAAGGGTAAAAGTGTTCCTGTCGCCGAGAAGAAGGTCGCCAA
GAAGGGCATGGCCGGAGGCACCGAGAAGACTACCAGGAAGAAGAAGCGCA
GTGAATCATACTCTATCTACATCTACAAGGTGTTGAAACAAGTTCATCCG
GATACTGGTATCTCCTCTAAGGCCATGAGCATCATGAATTCGTTCGTCGC
TGATCTTTTCGAAAGGATCGCAACTGAAGCTGCGAAGCTCGCATCTTACA
ACAACACGAAGACGCTCACCTCTCGAGAAATTCAGACCGCTGTCCGTCTC
CTCCTCCCCGGAGAGCTTGCCAAGCATGCTGTGTCTGAAGGAACCAAGGC
TGTCACTAAGTACAGCTCAAGCTAA
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