Ggra2165.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2165.t1
Unique Name	Ggra2165.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:532180..534129 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT489CT
PFAMs	Radical_SAM,Rotamase_3,TRAM,UPF0004
Max annot lvl	2759\|Eukaryota
Evalue	5.95e-176
EggNOG OGs	COG0621@1\|root,KOG2492@2759\|Eukaryota
Description	N6-isopentenyladenosine methylthiotransferase activity
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2165	Ggra2165	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 532180..534129 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2165.t1.start1	Ggra2165.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 532180..532182 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2165.t1.CDS1	Ggra2165.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 532180..534129 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2165.t1.exon1	Ggra2165.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 532180..534129 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2165.t1.stop1	Ggra2165.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 534127..534129 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2165.t1	Ggra2165.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 532180..534129 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:532180..534129+
coding sequence from alignment at tig00000900_pilon:532180..534129+

mRNA sequence

>Ggra2165.t1 ID=Ggra2165.t1|Name=Ggra2165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=650bp
MRGKGAFVSVGFNGRSESWLSPKVSRAQQICHQRARHITNAVLQQPKAKS
QPRRTPSPGEPAHKYFEFSPEDIEAIRIRHCRLESKELCDYVWEQVTHRK
ARLEDLAASLSTCAASKRQGGDLGWWWKDEVVPESTEEFGINDQLLAAAL
RSRPNRIERTETKDGWHVFVVEETRHTLRTKHERTPSKKNPNRTREMGSV
NDISAPLPFTYAIQTLGCQMNKSDSERMAGELSRRGYTETSDPFRASVLV
LNTCNIREHAESKVYSYIGRHVMRKRRYPTSVTLCVAGCVAQQEGEKMLR
RIPELDLVFGPQYANRLGDLLSDVERNGCQIAATDPIHIQEDISKPKRES
TVTAWVSVIYGCGENCSFCTVGNVVRTVEQSRTMGAIRAEIEEAARDGIR
EVVLLGQNVDAYGRDMYPKRTLAELLTFIHDVDGIDRIRFTTSHPRYIST
NLVNTCATLPKIMPYFHIPPQSGDNQILKEMRRGYSSEAYESVVGRIREC
IPDAGICGDMIVGFPGETEEQFQRSLDLMDRIKFDGMNTAAYSPRPQTPA
AIMKNQVPDAVKADRLHRMNDVVKEHALERSLRYVGRIEQVLVEEENPKD
AQQVVGRTPANRRVYFEGSIAELKGKIVPVKIIHAYPFSLKGQKVGPAY*

spliced messenger RNA

>Ggra2165.t1 ID=Ggra2165.t1|Name=Ggra2165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000900_pilon:532180..534129+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGGAAGGGAGCATTCGTGTCTGTTGGTTTCAATGGGCGTTCTGA
AAGCTGGCTGTCCCCCAAAGTATCACGTGCGCAACAGATATGCCATCAAC
GCGCGAGACACATTACGAACGCCGTTCTGCAGCAACCAAAAGCAAAGAGT
CAACCCCGAAGAACTCCTTCCCCTGGGGAACCCGCTCATAAATATTTTGA
ATTCTCACCGGAGGACATTGAGGCAATTCGTATTCGTCATTGCCGCTTAG
AAAGCAAGGAGCTCTGTGACTATGTCTGGGAACAAGTTACTCATCGGAAG
GCTCGTTTGGAAGATTTGGCTGCTTCGCTTTCCACTTGTGCTGCATCGAA
GCGGCAAGGTGGGGATTTGGGTTGGTGGTGGAAGGATGAAGTCGTCCCTG
AAAGTACCGAGGAGTTCGGCATAAACGATCAACTCCTTGCGGCCGCTCTG
CGAAGTCGCCCAAACAGGATAGAGCGAACTGAAACCAAGGACGGGTGGCA
TGTTTTTGTCGTTGAGGAAACGCGTCATACTCTTCGAACCAAACATGAAA
GAACACCTTCGAAAAAGAATCCAAACCGCACAAGAGAAATGGGCTCTGTG
AATGATATCTCAGCACCTCTGCCTTTCACGTATGCTATTCAGACTCTTGG
ATGTCAAATGAACAAGTCTGATTCAGAACGTATGGCTGGAGAACTGAGTC
GTCGTGGATATACCGAGACGAGCGATCCCTTCCGGGCTTCCGTTCTTGTT
CTTAACACATGTAATATTCGCGAGCATGCTGAAAGCAAAGTTTACAGCTA
TATTGGGCGACATGTGATGAGGAAGAGGAGGTATCCAACTAGCGTTACGC
TTTGCGTCGCGGGATGTGTGGCTCAACAGGAAGGGGAGAAAATGCTTCGC
CGAATTCCGGAACTTGACCTCGTTTTTGGCCCTCAGTACGCGAACAGGTT
AGGGGATCTGTTATCTGATGTAGAAAGGAATGGGTGTCAAATTGCAGCAA
CTGATCCTATTCATATCCAAGAAGACATATCAAAACCCAAGCGTGAGTCT
ACCGTAACCGCGTGGGTCAGTGTGATATACGGGTGTGGCGAAAACTGCAG
TTTTTGCACAGTTGGGAACGTGGTTCGTACAGTTGAACAGAGTCGCACAA
TGGGGGCAATCCGAGCCGAAATCGAAGAAGCCGCGAGAGACGGGATTCGA
GAGGTTGTGCTTTTAGGCCAAAATGTTGACGCGTATGGTCGAGACATGTA
CCCGAAGAGAACCTTGGCGGAACTTTTGACTTTCATTCATGATGTGGACG
GCATTGACAGAATCCGGTTTACCACAAGTCATCCACGATACATTTCCACG
AACCTCGTGAATACTTGTGCAACGTTACCCAAGATCATGCCTTACTTTCA
CATTCCTCCGCAGAGTGGAGATAATCAAATTCTAAAAGAAATGCGAAGAG
GGTACTCGTCAGAAGCATATGAGAGTGTTGTGGGCCGTATAAGGGAGTGC
ATTCCAGATGCCGGAATTTGCGGGGATATGATCGTAGGATTCCCAGGTGA
AACGGAAGAGCAATTCCAAAGATCTCTTGATCTTATGGACAGGATAAAGT
TTGATGGGATGAACACAGCAGCCTATTCGCCGCGACCGCAGACTCCTGCA
GCGATTATGAAGAACCAAGTTCCTGACGCGGTTAAGGCTGATAGATTGCA
CCGAATGAATGATGTAGTCAAAGAGCATGCATTGGAGAGAAGCCTTCGAT
ATGTTGGGAGAATCGAACAAGTGCTTGTTGAAGAAGAAAACCCAAAGGAC
GCCCAGCAAGTTGTGGGAAGAACCCCAGCGAATCGTCGTGTTTACTTTGA
AGGCTCTATTGCAGAACTGAAAGGCAAGATTGTTCCTGTGAAGATTATTC
ATGCTTATCCATTTAGTTTGAAAGGTCAGAAAGTGGGGCCCGCATACTAA

protein sequence of Ggra2165.t1

>Ggra2165.t1 ID=Ggra2165.t1|Name=Ggra2165.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=650bp
MRGKGAFVSVGFNGRSESWLSPKVSRAQQICHQRARHITNAVLQQPKAKS
QPRRTPSPGEPAHKYFEFSPEDIEAIRIRHCRLESKELCDYVWEQVTHRK
ARLEDLAASLSTCAASKRQGGDLGWWWKDEVVPESTEEFGINDQLLAAAL
RSRPNRIERTETKDGWHVFVVEETRHTLRTKHERTPSKKNPNRTREMGSV
NDISAPLPFTYAIQTLGCQMNKSDSERMAGELSRRGYTETSDPFRASVLV
LNTCNIREHAESKVYSYIGRHVMRKRRYPTSVTLCVAGCVAQQEGEKMLR
RIPELDLVFGPQYANRLGDLLSDVERNGCQIAATDPIHIQEDISKPKRES
TVTAWVSVIYGCGENCSFCTVGNVVRTVEQSRTMGAIRAEIEEAARDGIR
EVVLLGQNVDAYGRDMYPKRTLAELLTFIHDVDGIDRIRFTTSHPRYIST
NLVNTCATLPKIMPYFHIPPQSGDNQILKEMRRGYSSEAYESVVGRIREC
IPDAGICGDMIVGFPGETEEQFQRSLDLMDRIKFDGMNTAAYSPRPQTPA
AIMKNQVPDAVKADRLHRMNDVVKEHALERSLRYVGRIEQVLVEEENPKD
AQQVVGRTPANRRVYFEGSIAELKGKIVPVKIIHAYPFSLKGQKVGPAY*

mRNA from alignment at tig00000900_pilon:532180..534129+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2165.t1 ID=Ggra2165.t1|Name=Ggra2165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000900_pilon:532180..534129+ (Gracilaria gracilis GNS1m male)
ATGCGCGGGAAGGGAGCATTCGTGTCTGTTGGTTTCAATGGGCGTTCTGA
AAGCTGGCTGTCCCCCAAAGTATCACGTGCGCAACAGATATGCCATCAAC
GCGCGAGACACATTACGAACGCCGTTCTGCAGCAACCAAAAGCAAAGAGT
CAACCCCGAAGAACTCCTTCCCCTGGGGAACCCGCTCATAAATATTTTGA
ATTCTCACCGGAGGACATTGAGGCAATTCGTATTCGTCATTGCCGCTTAG
AAAGCAAGGAGCTCTGTGACTATGTCTGGGAACAAGTTACTCATCGGAAG
GCTCGTTTGGAAGATTTGGCTGCTTCGCTTTCCACTTGTGCTGCATCGAA
GCGGCAAGGTGGGGATTTGGGTTGGTGGTGGAAGGATGAAGTCGTCCCTG
AAAGTACCGAGGAGTTCGGCATAAACGATCAACTCCTTGCGGCCGCTCTG
CGAAGTCGCCCAAACAGGATAGAGCGAACTGAAACCAAGGACGGGTGGCA
TGTTTTTGTCGTTGAGGAAACGCGTCATACTCTTCGAACCAAACATGAAA
GAACACCTTCGAAAAAGAATCCAAACCGCACAAGAGAAATGGGCTCTGTG
AATGATATCTCAGCACCTCTGCCTTTCACGTATGCTATTCAGACTCTTGG
ATGTCAAATGAACAAGTCTGATTCAGAACGTATGGCTGGAGAACTGAGTC
GTCGTGGATATACCGAGACGAGCGATCCCTTCCGGGCTTCCGTTCTTGTT
CTTAACACATGTAATATTCGCGAGCATGCTGAAAGCAAAGTTTACAGCTA
TATTGGGCGACATGTGATGAGGAAGAGGAGGTATCCAACTAGCGTTACGC
TTTGCGTCGCGGGATGTGTGGCTCAACAGGAAGGGGAGAAAATGCTTCGC
CGAATTCCGGAACTTGACCTCGTTTTTGGCCCTCAGTACGCGAACAGGTT
AGGGGATCTGTTATCTGATGTAGAAAGGAATGGGTGTCAAATTGCAGCAA
CTGATCCTATTCATATCCAAGAAGACATATCAAAACCCAAGCGTGAGTCT
ACCGTAACCGCGTGGGTCAGTGTGATATACGGGTGTGGCGAAAACTGCAG
TTTTTGCACAGTTGGGAACGTGGTTCGTACAGTTGAACAGAGTCGCACAA
TGGGGGCAATCCGAGCCGAAATCGAAGAAGCCGCGAGAGACGGGATTCGA
GAGGTTGTGCTTTTAGGCCAAAATGTTGACGCGTATGGTCGAGACATGTA
CCCGAAGAGAACCTTGGCGGAACTTTTGACTTTCATTCATGATGTGGACG
GCATTGACAGAATCCGGTTTACCACAAGTCATCCACGATACATTTCCACG
AACCTCGTGAATACTTGTGCAACGTTACCCAAGATCATGCCTTACTTTCA
CATTCCTCCGCAGAGTGGAGATAATCAAATTCTAAAAGAAATGCGAAGAG
GGTACTCGTCAGAAGCATATGAGAGTGTTGTGGGCCGTATAAGGGAGTGC
ATTCCAGATGCCGGAATTTGCGGGGATATGATCGTAGGATTCCCAGGTGA
AACGGAAGAGCAATTCCAAAGATCTCTTGATCTTATGGACAGGATAAAGT
TTGATGGGATGAACACAGCAGCCTATTCGCCGCGACCGCAGACTCCTGCA
GCGATTATGAAGAACCAAGTTCCTGACGCGGTTAAGGCTGATAGATTGCA
CCGAATGAATGATGTAGTCAAAGAGCATGCATTGGAGAGAAGCCTTCGAT
ATGTTGGGAGAATCGAACAAGTGCTTGTTGAAGAAGAAAACCCAAAGGAC
GCCCAGCAAGTTGTGGGAAGAACCCCAGCGAATCGTCGTGTTTACTTTGA
AGGCTCTATTGCAGAACTGAAAGGCAAGATTGTTCCTGTGAAGATTATTC
ATGCTTATCCATTTAGTTTGAAAGGTCAGAAAGTGGGGCCCGCATACTAA

Coding sequence (CDS) from alignment at tig00000900_pilon:532180..534129+

>Ggra2165.t1 ID=Ggra2165.t1|Name=Ggra2165.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1950bp|location=Sequence derived from alignment at tig00000900_pilon:532180..534129+ (Gracilaria gracilis GNS1m male)
ATGCGCGGGAAGGGAGCATTCGTGTCTGTTGGTTTCAATGGGCGTTCTGA
AAGCTGGCTGTCCCCCAAAGTATCACGTGCGCAACAGATATGCCATCAAC
GCGCGAGACACATTACGAACGCCGTTCTGCAGCAACCAAAAGCAAAGAGT
CAACCCCGAAGAACTCCTTCCCCTGGGGAACCCGCTCATAAATATTTTGA
ATTCTCACCGGAGGACATTGAGGCAATTCGTATTCGTCATTGCCGCTTAG
AAAGCAAGGAGCTCTGTGACTATGTCTGGGAACAAGTTACTCATCGGAAG
GCTCGTTTGGAAGATTTGGCTGCTTCGCTTTCCACTTGTGCTGCATCGAA
GCGGCAAGGTGGGGATTTGGGTTGGTGGTGGAAGGATGAAGTCGTCCCTG
AAAGTACCGAGGAGTTCGGCATAAACGATCAACTCCTTGCGGCCGCTCTG
CGAAGTCGCCCAAACAGGATAGAGCGAACTGAAACCAAGGACGGGTGGCA
TGTTTTTGTCGTTGAGGAAACGCGTCATACTCTTCGAACCAAACATGAAA
GAACACCTTCGAAAAAGAATCCAAACCGCACAAGAGAAATGGGCTCTGTG
AATGATATCTCAGCACCTCTGCCTTTCACGTATGCTATTCAGACTCTTGG
ATGTCAAATGAACAAGTCTGATTCAGAACGTATGGCTGGAGAACTGAGTC
GTCGTGGATATACCGAGACGAGCGATCCCTTCCGGGCTTCCGTTCTTGTT
CTTAACACATGTAATATTCGCGAGCATGCTGAAAGCAAAGTTTACAGCTA
TATTGGGCGACATGTGATGAGGAAGAGGAGGTATCCAACTAGCGTTACGC
TTTGCGTCGCGGGATGTGTGGCTCAACAGGAAGGGGAGAAAATGCTTCGC
CGAATTCCGGAACTTGACCTCGTTTTTGGCCCTCAGTACGCGAACAGGTT
AGGGGATCTGTTATCTGATGTAGAAAGGAATGGGTGTCAAATTGCAGCAA
CTGATCCTATTCATATCCAAGAAGACATATCAAAACCCAAGCGTGAGTCT
ACCGTAACCGCGTGGGTCAGTGTGATATACGGGTGTGGCGAAAACTGCAG
TTTTTGCACAGTTGGGAACGTGGTTCGTACAGTTGAACAGAGTCGCACAA
TGGGGGCAATCCGAGCCGAAATCGAAGAAGCCGCGAGAGACGGGATTCGA
GAGGTTGTGCTTTTAGGCCAAAATGTTGACGCGTATGGTCGAGACATGTA
CCCGAAGAGAACCTTGGCGGAACTTTTGACTTTCATTCATGATGTGGACG
GCATTGACAGAATCCGGTTTACCACAAGTCATCCACGATACATTTCCACG
AACCTCGTGAATACTTGTGCAACGTTACCCAAGATCATGCCTTACTTTCA
CATTCCTCCGCAGAGTGGAGATAATCAAATTCTAAAAGAAATGCGAAGAG
GGTACTCGTCAGAAGCATATGAGAGTGTTGTGGGCCGTATAAGGGAGTGC
ATTCCAGATGCCGGAATTTGCGGGGATATGATCGTAGGATTCCCAGGTGA
AACGGAAGAGCAATTCCAAAGATCTCTTGATCTTATGGACAGGATAAAGT
TTGATGGGATGAACACAGCAGCCTATTCGCCGCGACCGCAGACTCCTGCA
GCGATTATGAAGAACCAAGTTCCTGACGCGGTTAAGGCTGATAGATTGCA
CCGAATGAATGATGTAGTCAAAGAGCATGCATTGGAGAGAAGCCTTCGAT
ATGTTGGGAGAATCGAACAAGTGCTTGTTGAAGAAGAAAACCCAAAGGAC
GCCCAGCAAGTTGTGGGAAGAACCCCAGCGAATCGTCGTGTTTACTTTGA
AGGCTCTATTGCAGAACTGAAAGGCAAGATTGTTCCTGTGAAGATTATTC
ATGCTTATCCATTTAGTTTGAAAGGTCAGAAAGTGGGGCCCGCATACTAA