Ggra2160.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2160.t1
Unique NameGgra2160.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:470267..470748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705453.1
Preferred nameLYRM1
PFAMsComplex1_LYR
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0030496,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013
Evalue2.88e-26
EggNOG OGs2BPRX@1|root,2S0XV@2759|Eukaryota
DescriptionComplex 1 protein (LYR family)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2160Ggra2160Gracilaria gracilis GNS1m malegenetig00000900_pilon 470267..470748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2160.t1Ggra2160.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 470267..470748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2160.t1.start1Ggra2160.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 470267..470269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2160.t1.CDS1Ggra2160.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 470267..470327 +
Ggra2160.t1.CDS2Ggra2160.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 470465..470748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2160.t1.exon1Ggra2160.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 470267..470327 +
Ggra2160.t1.exon2Ggra2160.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 470465..470748 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2160.t1.intron1Ggra2160.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 470328..470464 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2160.t1.stop1Ggra2160.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 470746..470748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2160.t1 ID=Ggra2160.t1|Name=Ggra2160.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=115bp
MKHRRQVLSLYRRVLRIAKSWEEPSERSYIVNEAKSLVRRNRNIESEDVI
AEKVQEFEARITTGLHYKIPYPRPTNVAPGATGKDPEVITPVYLDSYKQS
QGVNRKAAREKPEY*
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spliced messenger RNA

>Ggra2160.t1 ID=Ggra2160.t1|Name=Ggra2160.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000900_pilon:470267..470748+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACATCGAAGGCAAGTGTTGTCTCTCTACCGCAGGGTTCTGCGTAT
CGCCAAGTCATGGGAAGAACCTAGTGAGCGTTCTTACATTGTGAACGAAG
CTAAGAGTCTAGTCCGCAGGAACAGAAACATAGAATCAGAAGATGTTATA
GCCGAGAAGGTACAAGAATTTGAAGCAAGGATAACGACAGGTTTGCACTA
CAAGATACCGTATCCGAGACCAACAAATGTCGCTCCTGGTGCGACTGGAA
AAGATCCGGAAGTCATTACTCCAGTTTATTTGGACTCATACAAGCAATCA
CAAGGCGTAAATCGCAAAGCAGCTAGAGAAAAACCAGAATACTAA
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protein sequence of Ggra2160.t1

>Ggra2160.t1 ID=Ggra2160.t1|Name=Ggra2160.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MKHRRQVLSLYRRVLRIAKSWEEPSERSYIVNEAKSLVRRNRNIESEDVI
AEKVQEFEARITTGLHYKIPYPRPTNVAPGATGKDPEVITPVYLDSYKQS
QGVNRKAAREKPEY*
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mRNA from alignment at tig00000900_pilon:470267..470748+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2160.t1 ID=Ggra2160.t1|Name=Ggra2160.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp|location=Sequence derived from alignment at tig00000900_pilon:470267..470748+ (Gracilaria gracilis GNS1m male)
ATGAAACATCGAAGGCAAGTGTTGTCTCTCTACCGCAGGGTTCTGCGTAT
CGCCAAGTCATGTAAGTTGTATCTGGGATCTTCATTGGATCACTGCGGTT
ATATGTGCGACGACCCTGGCATCGACCTGACGCTTTGCTGTCCATCCCTT
TGCATACATTGAATTCCTCTCTTTGCGGATTTCCGTCTGGTAATGAAGGG
GAAGAACCTAGTGAGCGTTCTTACATTGTGAACGAAGCTAAGAGTCTAGT
CCGCAGGAACAGAAACATAGAATCAGAAGATGTTATAGCCGAGAAGGTAC
AAGAATTTGAAGCAAGGATAACGACAGGTTTGCACTACAAGATACCGTAT
CCGAGACCAACAAATGTCGCTCCTGGTGCGACTGGAAAAGATCCGGAAGT
CATTACTCCAGTTTATTTGGACTCATACAAGCAATCACAAGGCGTAAATC
GCAAAGCAGCTAGAGAAAAACCAGAATACTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:470267..470748+

>Ggra2160.t1 ID=Ggra2160.t1|Name=Ggra2160.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000900_pilon:470267..470748+ (Gracilaria gracilis GNS1m male)
ATGAAACATCGAAGGCAAGTGTTGTCTCTCTACCGCAGGGTTCTGCGTAT
CGCCAAGTCATGGGAAGAACCTAGTGAGCGTTCTTACATTGTGAACGAAG
CTAAGAGTCTAGTCCGCAGGAACAGAAACATAGAATCAGAAGATGTTATA
GCCGAGAAGGTACAAGAATTTGAAGCAAGGATAACGACAGGTTTGCACTA
CAAGATACCGTATCCGAGACCAACAAATGTCGCTCCTGGTGCGACTGGAA
AAGATCCGGAAGTCATTACTCCAGTTTATTTGGACTCATACAAGCAATCA
CAAGGCGTAAATCGCAAAGCAGCTAGAGAAAAACCAGAATACTAA
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