Ggra2154.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2154.t1
Unique NameGgra2154.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length628
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:449225..452204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272569.rrnAC2143
Preferred namethiE
PFAMsTMP-TENI
Max annot lvl183963|Halobacteria
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
Evalue2e-31
EggNOG OGsCOG0352@1|root,arCOG01089@2157|Archaea,2XSTA@28890|Euryarchaeota,23U3A@183963|Halobacteria
EC2.5.1.3
DescriptionCondenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2154Ggra2154Gracilaria gracilis GNS1m malegenetig00000900_pilon 449225..452204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2154.t1Ggra2154.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 449225..452204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2154.t1.stop1Ggra2154.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 449225..449227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2154.t1.CDS1Ggra2154.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 449225..450545 -
Ggra2154.t1.CDS2Ggra2154.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 451468..451544 -
Ggra2154.t1.CDS3Ggra2154.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 451645..451990 -
Ggra2154.t1.CDS4Ggra2154.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000900_pilon 452065..452204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2154.t1.exon1Ggra2154.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 449225..450545 -
Ggra2154.t1.exon2Ggra2154.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 451468..451544 -
Ggra2154.t1.exon3Ggra2154.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 451645..451990 -
Ggra2154.t1.exon4Ggra2154.t1.exon4Gracilaria gracilis GNS1m maleexontig00000900_pilon 452065..452204 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2154.t1.intron1Ggra2154.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 450546..451467 -
Ggra2154.t1.intron2Ggra2154.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 451545..451644 -
Ggra2154.t1.intron3Ggra2154.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000900_pilon 451991..452064 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2154.t1.start1Ggra2154.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 452202..452204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2154.t1 ID=Ggra2154.t1|Name=Ggra2154.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=628bp
MRVSRRNFDPSVYLVTDPHTAPGLSVQRIVAQVVASPPNPPQVTFVQLRD
KNVSRAESIELGKQLREITARANVAFVVNDDIQLAALLRADGVHLGQDDQ
PVSVARDLLGEHAIVGVSAATEHEIDTAIADGADYVGVGSVFATASKPDA
GKPLGEQQLRRLLFQPLWQVLNPPGQPSSWLLSCLVAIVTKYDPPIGLTP
PPCARRVCRHRVCFPFSLVCIANFAFGFGAGYLYAQYRNICTSEEEGNHA
ASKSDNTTGTVTQEVTAESQQHSATTVSDSVVEEQHDSLEQASRKFMESP
QCETEPKSPPGTPMRTDDKPFTTRRVLAAPGVESHAPENPNQELQHELEQ
LNASVAKEEESITSGCETNKLGLATVEEQGNVNITDLQVQPIHGCPPQSV
TSIRLNQDGVENHLMYAVSDFTGRYISNEKVPSLLEITPTILENGHLRLS
APGLSPAIHEPKFWGRKKNITIHGVQYEAVDQGDSVSQFFASYLEIPGVR
LLLLRPPPLSNGGHQLFRTWPTADRPLLLISEESKSSAENNHSTPMGTNI
VISASESDILSSTAIKIGDHLFEVMKVRGEGSHENIPSHHLLGGGMTLVP
VNFGRNEFVLNCDQTIVMIKPGPEECA*
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spliced messenger RNA

>Ggra2154.t1 ID=Ggra2154.t1|Name=Ggra2154.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000900_pilon:449225..452204- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGTCGCGCCGCAACTTCGACCCCTCGGTGTACTTGGTCACGGA
CCCTCACACCGCGCCCGGCTTGAGCGTGCAGCGCATCGTCGCACAAGTGG
TGGCCAGCCCGCCAAATCCCCCTCAGGTCACCTTTGTGCAACTGCGAGAC
AAGAACGTTTCCCGCGCAGAGTCCATCGAGCTCGGCAAACAGCTGCGCGA
GATCACAGCGCGAGCCAACGTTGCATTTGTGGTCAACGACGATATCCAAC
TCGCCGCCTTGTTGCGCGCGGACGGCGTGCATCTGGGTCAAGATGACCAG
CCCGTTTCTGTCGCCAGAGATCTTTTGGGCGAACATGCCATTGTCGGCGT
CTCTGCGGCCACGGAGCACGAAATAGACACCGCGATAGCCGATGGTGCGG
ACTATGTTGGCGTGGGGTCAGTGTTCGCAACCGCCTCAAAACCTGATGCT
GGAAAGCCGCTTGGCGAGCAGCAGTTACGCCGATTGTTATTTCAGCCATT
ATGGCAAGTCCTCAACCCACCCGGGCAGCCCAGCAGCTGGCTTCTATCAT
GTCTAGTCGCGATTGTCACCAAGTATGACCCACCAATCGGGCTTACTCCT
CCTCCGTGCGCAAGACGCGTCTGTCGCCATCGCGTTTGCTTCCCGTTTTC
GCTTGTTTGTATTGCAAACTTCGCGTTCGGTTTTGGTGCCGGTTATCTCT
ATGCACAGTACCGAAACATCTGCACATCGGAGGAGGAAGGCAATCATGCT
GCTTCAAAGAGCGACAATACTACAGGTACCGTCACTCAAGAAGTAACTGC
TGAAAGTCAGCAACACTCGGCAACAACAGTTTCTGATTCAGTTGTCGAAG
AGCAGCATGATTCTTTGGAACAGGCTTCAAGAAAGTTTATGGAGTCCCCA
CAATGTGAAACAGAACCAAAGTCACCACCGGGAACCCCGATGAGAACCGA
TGATAAACCCTTTACGACAAGGCGAGTTCTGGCAGCTCCGGGGGTGGAAT
CACACGCACCCGAGAATCCCAACCAAGAGCTCCAACATGAGCTGGAACAG
CTTAACGCATCTGTAGCAAAGGAGGAGGAAAGCATTACTTCTGGTTGTGA
AACTAATAAGTTGGGATTGGCGACTGTTGAAGAACAAGGAAATGTTAACA
TCACTGATCTACAAGTCCAGCCCATTCATGGTTGTCCGCCACAGTCTGTG
ACTTCAATAAGACTCAACCAAGATGGTGTTGAAAACCATCTCATGTACGC
CGTTTCAGACTTTACTGGTCGATACATTTCGAATGAGAAGGTTCCATCTC
TTTTGGAAATTACCCCCACTATCCTTGAGAACGGGCATTTGCGTCTTTCT
GCCCCGGGGCTATCGCCCGCGATACACGAACCGAAGTTTTGGGGTCGTAA
GAAGAATATAACCATCCACGGGGTTCAATACGAAGCTGTAGATCAAGGCG
ATAGTGTGTCACAGTTCTTCGCTAGCTATTTGGAAATACCAGGAGTTCGA
CTTTTGTTGCTTCGACCCCCTCCGCTTTCAAATGGAGGCCATCAGCTATT
CAGGACCTGGCCTACTGCTGATCGCCCACTGCTATTGATAAGCGAAGAAA
GCAAATCGTCCGCAGAGAACAATCATAGCACGCCCATGGGTACAAATATA
GTCATTTCGGCCTCAGAATCGGACATCCTGAGCTCGACAGCTATCAAGAT
CGGTGACCATCTGTTTGAGGTCATGAAGGTCCGCGGCGAAGGCTCCCATG
AAAATATTCCATCGCACCACTTGCTGGGAGGCGGAATGACTTTGGTTCCT
GTCAATTTCGGAAGAAATGAATTCGTTTTGAACTGTGACCAGACGATTGT
CATGATAAAGCCTGGTCCAGAAGAATGTGCTTAA
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protein sequence of Ggra2154.t1

>Ggra2154.t1 ID=Ggra2154.t1|Name=Ggra2154.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=628bp
MRVSRRNFDPSVYLVTDPHTAPGLSVQRIVAQVVASPPNPPQVTFVQLRD
KNVSRAESIELGKQLREITARANVAFVVNDDIQLAALLRADGVHLGQDDQ
PVSVARDLLGEHAIVGVSAATEHEIDTAIADGADYVGVGSVFATASKPDA
GKPLGEQQLRRLLFQPLWQVLNPPGQPSSWLLSCLVAIVTKYDPPIGLTP
PPCARRVCRHRVCFPFSLVCIANFAFGFGAGYLYAQYRNICTSEEEGNHA
ASKSDNTTGTVTQEVTAESQQHSATTVSDSVVEEQHDSLEQASRKFMESP
QCETEPKSPPGTPMRTDDKPFTTRRVLAAPGVESHAPENPNQELQHELEQ
LNASVAKEEESITSGCETNKLGLATVEEQGNVNITDLQVQPIHGCPPQSV
TSIRLNQDGVENHLMYAVSDFTGRYISNEKVPSLLEITPTILENGHLRLS
APGLSPAIHEPKFWGRKKNITIHGVQYEAVDQGDSVSQFFASYLEIPGVR
LLLLRPPPLSNGGHQLFRTWPTADRPLLLISEESKSSAENNHSTPMGTNI
VISASESDILSSTAIKIGDHLFEVMKVRGEGSHENIPSHHLLGGGMTLVP
VNFGRNEFVLNCDQTIVMIKPGPEECA*
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mRNA from alignment at tig00000900_pilon:449225..452204-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2154.t1 ID=Ggra2154.t1|Name=Ggra2154.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2980bp|location=Sequence derived from alignment at tig00000900_pilon:449225..452204- (Gracilaria gracilis GNS1m male)
ATGCGCGTGTCGCGCCGCAACTTCGACCCCTCGGTGTACTTGGTCACGGA
CCCTCACACCGCGCCCGGCTTGAGCGTGCAGCGCATCGTCGCACAAGTGG
TGGCCAGCCCGCCAAATCCCCCTCAGGTCACCTTTGTGCAGTACGTTTCA
ACCACCCCCGCCCCTTTTCCCGCTCCTTCCCCCGAATTAGCCCCACTGAC
TGGCCAACGCGTAGACTGCGAGACAAGAACGTTTCCCGCGCAGAGTCCAT
CGAGCTCGGCAAACAGCTGCGCGAGATCACAGCGCGAGCCAACGTTGCAT
TTGTGGTCAACGACGATATCCAACTCGCCGCCTTGTTGCGCGCGGACGGC
GTGCATCTGGGTCAAGATGACCAGCCCGTTTCTGTCGCCAGAGATCTTTT
GGGCGAACATGCCATTGTCGGCGTCTCTGCGGCCACGGAGCACGAAATAG
ACACCGCGATAGCCGATGGTGCGGACTATGTTGGCGTGGGGTCAGTGTTC
GCAACCGCCTCAAAACCTGATGCTGGAAAGCCGCTTGGCGAGCAGCAGTT
ACGCCGATTGGTACGCTACACTAATTCGAGAATCCCAGTTGTTGCCATCG
GTGGCATCAACGTAGAAAACGCTGGCTTATGCAAAAGTGCAGGTGCTGAC
GGCGTAGCAGTTATTTCAGCCATTATGGCAAGTCCTCAACCCACCCGGGC
AGCCCAGCAGCTGGCTTCTATCATGTCTAGTCGCGATGTCCCCATCATGT
AGATAAGCGAAGCGACAAGGCGGACAGCGTACCGCTGTACGTACACTTTT
TGTTGACCTTGCTGGGGCTCCCCCATTCCGGTGTGTTACAAGAGCCCTCA
CTTCCTATACCCTGTAGAGGGCTAACCTTCTAGCCCTCTTAACCTTCCAT
GATCAACTGCAACCACGAGTCGCAATGAAATAACTTCTAGCGTTCCAGAC
GCCACCGTATCAATTGTTTTGAAGAGTCCAGGTGTGGCTCAAACACTACT
GACATCACCAACTTTGTAGCTTCGTGTATAACTTATCCGCCTAGAGTAGA
ATAGACGAATGTTAAGCATTCCAATGGGCCACCTCTGTCTCATTTGAAGT
CGTTTGCAGTTGTAAGAACCTCTGATACCTGCCAAGGAAGTAACCTTAGG
TTCACTTGGTAATAAGATACCAAGTTGGTATAAACTGTATGCCCGCAAAA
CGTTACCGTTGGAATTTTACATTTGGGATCGCCGTTGACAAAGAGAACGT
TCAACCAAGGACTCCGTGTGTATCTATCAGCATTCCTGTGCACGCCCCCT
CAGCACATGTGTGCATTCAGTTTTTGAAAGAACGAGCTCCGTCTCCCACA
ATCAAACCTCCGGGCTGGATGAATAAGGCCAACTCTGCCGCTTCTTCCTG
TCTCCATTTGCAGAGTGTCCCAATTTACCCTGATTCTTCTTGGTCCCAAC
AGACTCTTTCGCTGAAACAGTCATCATCACTGAAAGCAAGGTATCCCTGT
CCCGCTATTCAGTATAGATAATGCGCTGGGCAACGAATCCTTGGAGGAGT
GGACACAGTACTAGTTCTCGTCCGAATGACTGCTTCACACCATCCTTTTT
CCTTCCTTCCGCCAGCGAAACCGCTTCGCGGGCGGAACATATCAACCGCG
TCACCCTAGTGTCACCAAGTATGACCCACCAATCGGGCTTACTCCTCCTC
CGTGCGCAAGACGCGTCTGTCGCCATCGCGTTTGCTTCCCGTTTTCGCTT
GTTTGTATTGCAAACTTCGCGTTCGGTTTTGGTGCCGGTTATCTCTATGC
ACAGTACCGAAACATCTGCACATCGGAGGAGGAAGGCAATCATGCTGCTT
CAAAGAGCGACAATACTACAGGTACCGTCACTCAAGAAGTAACTGCTGAA
AGTCAGCAACACTCGGCAACAACAGTTTCTGATTCAGTTGTCGAAGAGCA
GCATGATTCTTTGGAACAGGCTTCAAGAAAGTTTATGGAGTCCCCACAAT
GTGAAACAGAACCAAAGTCACCACCGGGAACCCCGATGAGAACCGATGAT
AAACCCTTTACGACAAGGCGAGTTCTGGCAGCTCCGGGGGTGGAATCACA
CGCACCCGAGAATCCCAACCAAGAGCTCCAACATGAGCTGGAACAGCTTA
ACGCATCTGTAGCAAAGGAGGAGGAAAGCATTACTTCTGGTTGTGAAACT
AATAAGTTGGGATTGGCGACTGTTGAAGAACAAGGAAATGTTAACATCAC
TGATCTACAAGTCCAGCCCATTCATGGTTGTCCGCCACAGTCTGTGACTT
CAATAAGACTCAACCAAGATGGTGTTGAAAACCATCTCATGTACGCCGTT
TCAGACTTTACTGGTCGATACATTTCGAATGAGAAGGTTCCATCTCTTTT
GGAAATTACCCCCACTATCCTTGAGAACGGGCATTTGCGTCTTTCTGCCC
CGGGGCTATCGCCCGCGATACACGAACCGAAGTTTTGGGGTCGTAAGAAG
AATATAACCATCCACGGGGTTCAATACGAAGCTGTAGATCAAGGCGATAG
TGTGTCACAGTTCTTCGCTAGCTATTTGGAAATACCAGGAGTTCGACTTT
TGTTGCTTCGACCCCCTCCGCTTTCAAATGGAGGCCATCAGCTATTCAGG
ACCTGGCCTACTGCTGATCGCCCACTGCTATTGATAAGCGAAGAAAGCAA
ATCGTCCGCAGAGAACAATCATAGCACGCCCATGGGTACAAATATAGTCA
TTTCGGCCTCAGAATCGGACATCCTGAGCTCGACAGCTATCAAGATCGGT
GACCATCTGTTTGAGGTCATGAAGGTCCGCGGCGAAGGCTCCCATGAAAA
TATTCCATCGCACCACTTGCTGGGAGGCGGAATGACTTTGGTTCCTGTCA
ATTTCGGAAGAAATGAATTCGTTTTGAACTGTGACCAGACGATTGTCATG
ATAAAGCCTGGTCCAGAAGAATGTGCTTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:449225..452204-

>Ggra2154.t1 ID=Ggra2154.t1|Name=Ggra2154.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1884bp|location=Sequence derived from alignment at tig00000900_pilon:449225..452204- (Gracilaria gracilis GNS1m male)
ATGCGCGTGTCGCGCCGCAACTTCGACCCCTCGGTGTACTTGGTCACGGA
CCCTCACACCGCGCCCGGCTTGAGCGTGCAGCGCATCGTCGCACAAGTGG
TGGCCAGCCCGCCAAATCCCCCTCAGGTCACCTTTGTGCAACTGCGAGAC
AAGAACGTTTCCCGCGCAGAGTCCATCGAGCTCGGCAAACAGCTGCGCGA
GATCACAGCGCGAGCCAACGTTGCATTTGTGGTCAACGACGATATCCAAC
TCGCCGCCTTGTTGCGCGCGGACGGCGTGCATCTGGGTCAAGATGACCAG
CCCGTTTCTGTCGCCAGAGATCTTTTGGGCGAACATGCCATTGTCGGCGT
CTCTGCGGCCACGGAGCACGAAATAGACACCGCGATAGCCGATGGTGCGG
ACTATGTTGGCGTGGGGTCAGTGTTCGCAACCGCCTCAAAACCTGATGCT
GGAAAGCCGCTTGGCGAGCAGCAGTTACGCCGATTGTTATTTCAGCCATT
ATGGCAAGTCCTCAACCCACCCGGGCAGCCCAGCAGCTGGCTTCTATCAT
GTCTAGTCGCGATTGTCACCAAGTATGACCCACCAATCGGGCTTACTCCT
CCTCCGTGCGCAAGACGCGTCTGTCGCCATCGCGTTTGCTTCCCGTTTTC
GCTTGTTTGTATTGCAAACTTCGCGTTCGGTTTTGGTGCCGGTTATCTCT
ATGCACAGTACCGAAACATCTGCACATCGGAGGAGGAAGGCAATCATGCT
GCTTCAAAGAGCGACAATACTACAGGTACCGTCACTCAAGAAGTAACTGC
TGAAAGTCAGCAACACTCGGCAACAACAGTTTCTGATTCAGTTGTCGAAG
AGCAGCATGATTCTTTGGAACAGGCTTCAAGAAAGTTTATGGAGTCCCCA
CAATGTGAAACAGAACCAAAGTCACCACCGGGAACCCCGATGAGAACCGA
TGATAAACCCTTTACGACAAGGCGAGTTCTGGCAGCTCCGGGGGTGGAAT
CACACGCACCCGAGAATCCCAACCAAGAGCTCCAACATGAGCTGGAACAG
CTTAACGCATCTGTAGCAAAGGAGGAGGAAAGCATTACTTCTGGTTGTGA
AACTAATAAGTTGGGATTGGCGACTGTTGAAGAACAAGGAAATGTTAACA
TCACTGATCTACAAGTCCAGCCCATTCATGGTTGTCCGCCACAGTCTGTG
ACTTCAATAAGACTCAACCAAGATGGTGTTGAAAACCATCTCATGTACGC
CGTTTCAGACTTTACTGGTCGATACATTTCGAATGAGAAGGTTCCATCTC
TTTTGGAAATTACCCCCACTATCCTTGAGAACGGGCATTTGCGTCTTTCT
GCCCCGGGGCTATCGCCCGCGATACACGAACCGAAGTTTTGGGGTCGTAA
GAAGAATATAACCATCCACGGGGTTCAATACGAAGCTGTAGATCAAGGCG
ATAGTGTGTCACAGTTCTTCGCTAGCTATTTGGAAATACCAGGAGTTCGA
CTTTTGTTGCTTCGACCCCCTCCGCTTTCAAATGGAGGCCATCAGCTATT
CAGGACCTGGCCTACTGCTGATCGCCCACTGCTATTGATAAGCGAAGAAA
GCAAATCGTCCGCAGAGAACAATCATAGCACGCCCATGGGTACAAATATA
GTCATTTCGGCCTCAGAATCGGACATCCTGAGCTCGACAGCTATCAAGAT
CGGTGACCATCTGTTTGAGGTCATGAAGGTCCGCGGCGAAGGCTCCCATG
AAAATATTCCATCGCACCACTTGCTGGGAGGCGGAATGACTTTGGTTCCT
GTCAATTTCGGAAGAAATGAATTCGTTTTGAACTGTGACCAGACGATTGT
CATGATAAAGCCTGGTCCAGAAGAATGTGCTTAA
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