Ggra2144.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2144.t1
Unique NameGgra2144.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:420232..421083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2144Ggra2144Gracilaria gracilis GNS1m malegenetig00000900_pilon 420232..421083 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2144.t1.stop1Ggra2144.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 420232..420234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2144.t1.CDS1Ggra2144.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 420232..421083 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2144.t1.exon1Ggra2144.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 420232..421083 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2144.t1.start1Ggra2144.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 421081..421083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2144.t1Ggra2144.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 420232..421083 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2144.t1 ID=Ggra2144.t1|Name=Ggra2144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MLQFLSNLKTEYRPYAAHPQTIIVGTNEARKAFCKGMDGVLLTRENAIVC
DLHILSSLHRQAGWRYVAIVSSASELYTIAKKVRTTSNIHAVNFVVIGIQ
CDLAQGVSLRTAALKELDAAGVILVEESDGRGQKVFQDILRVWREHKDDE
SMLSVWGEASLVSAKDVIIPPRWDSEGKIRAVVDAAGESYEALLEASSWG
TEIEPPKVDMPTEQSRVERQELGKRKKEEYLRNFEAWTTRMQQVAEKAKQ
NPGNDVTQVDGAEANEKTPAQADFFQKLLAGTR*
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spliced messenger RNA

>Ggra2144.t1 ID=Ggra2144.t1|Name=Ggra2144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000900_pilon:420232..421083- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCAGTTCTTGTCCAACCTAAAGACGGAATACAGGCCGTACGCGGC
GCACCCCCAGACGATTATAGTTGGCACCAATGAAGCTCGCAAAGCGTTCT
GCAAAGGTATGGATGGGGTACTTCTAACCAGGGAAAACGCCATAGTATGT
GATCTACATATCCTGAGTTCTCTCCATCGGCAAGCAGGTTGGAGATATGT
TGCGATTGTTTCTTCTGCGTCGGAGCTCTACACGATTGCAAAGAAAGTAC
GAACAACGTCAAATATTCACGCTGTCAACTTTGTTGTTATAGGTATACAA
TGTGATCTGGCCCAAGGCGTGTCACTGAGAACTGCCGCTCTGAAGGAACT
AGATGCAGCTGGAGTAATTCTCGTGGAAGAAAGTGATGGTCGCGGTCAAA
AGGTCTTCCAAGATATTTTACGCGTCTGGCGCGAGCACAAAGATGACGAG
TCCATGTTGTCTGTATGGGGCGAGGCCAGCCTTGTCAGCGCGAAAGACGT
AATTATTCCCCCAAGATGGGATTCGGAAGGCAAGATTAGGGCTGTGGTTG
ATGCTGCCGGTGAGAGCTACGAAGCACTTTTGGAGGCTTCATCCTGGGGA
ACAGAAATTGAACCGCCCAAAGTAGACATGCCAACCGAGCAATCGAGGGT
CGAGCGCCAGGAGCTTGGAAAGCGGAAGAAAGAAGAGTATTTGCGCAACT
TCGAGGCGTGGACCACGCGTATGCAACAAGTAGCCGAAAAGGCCAAGCAG
AATCCAGGAAACGATGTCACCCAAGTTGATGGTGCAGAAGCAAACGAGAA
AACACCAGCGCAAGCAGATTTCTTTCAAAAGTTATTGGCAGGGACCAGAT
AG
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protein sequence of Ggra2144.t1

>Ggra2144.t1 ID=Ggra2144.t1|Name=Ggra2144.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MLQFLSNLKTEYRPYAAHPQTIIVGTNEARKAFCKGMDGVLLTRENAIVC
DLHILSSLHRQAGWRYVAIVSSASELYTIAKKVRTTSNIHAVNFVVIGIQ
CDLAQGVSLRTAALKELDAAGVILVEESDGRGQKVFQDILRVWREHKDDE
SMLSVWGEASLVSAKDVIIPPRWDSEGKIRAVVDAAGESYEALLEASSWG
TEIEPPKVDMPTEQSRVERQELGKRKKEEYLRNFEAWTTRMQQVAEKAKQ
NPGNDVTQVDGAEANEKTPAQADFFQKLLAGTR*
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mRNA from alignment at tig00000900_pilon:420232..421083-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2144.t1 ID=Ggra2144.t1|Name=Ggra2144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000900_pilon:420232..421083- (Gracilaria gracilis GNS1m male)
ATGCTCCAGTTCTTGTCCAACCTAAAGACGGAATACAGGCCGTACGCGGC
GCACCCCCAGACGATTATAGTTGGCACCAATGAAGCTCGCAAAGCGTTCT
GCAAAGGTATGGATGGGGTACTTCTAACCAGGGAAAACGCCATAGTATGT
GATCTACATATCCTGAGTTCTCTCCATCGGCAAGCAGGTTGGAGATATGT
TGCGATTGTTTCTTCTGCGTCGGAGCTCTACACGATTGCAAAGAAAGTAC
GAACAACGTCAAATATTCACGCTGTCAACTTTGTTGTTATAGGTATACAA
TGTGATCTGGCCCAAGGCGTGTCACTGAGAACTGCCGCTCTGAAGGAACT
AGATGCAGCTGGAGTAATTCTCGTGGAAGAAAGTGATGGTCGCGGTCAAA
AGGTCTTCCAAGATATTTTACGCGTCTGGCGCGAGCACAAAGATGACGAG
TCCATGTTGTCTGTATGGGGCGAGGCCAGCCTTGTCAGCGCGAAAGACGT
AATTATTCCCCCAAGATGGGATTCGGAAGGCAAGATTAGGGCTGTGGTTG
ATGCTGCCGGTGAGAGCTACGAAGCACTTTTGGAGGCTTCATCCTGGGGA
ACAGAAATTGAACCGCCCAAAGTAGACATGCCAACCGAGCAATCGAGGGT
CGAGCGCCAGGAGCTTGGAAAGCGGAAGAAAGAAGAGTATTTGCGCAACT
TCGAGGCGTGGACCACGCGTATGCAACAAGTAGCCGAAAAGGCCAAGCAG
AATCCAGGAAACGATGTCACCCAAGTTGATGGTGCAGAAGCAAACGAGAA
AACACCAGCGCAAGCAGATTTCTTTCAAAAGTTATTGGCAGGGACCAGAT
AG
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Coding sequence (CDS) from alignment at tig00000900_pilon:420232..421083-

>Ggra2144.t1 ID=Ggra2144.t1|Name=Ggra2144.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000900_pilon:420232..421083- (Gracilaria gracilis GNS1m male)
ATGCTCCAGTTCTTGTCCAACCTAAAGACGGAATACAGGCCGTACGCGGC
GCACCCCCAGACGATTATAGTTGGCACCAATGAAGCTCGCAAAGCGTTCT
GCAAAGGTATGGATGGGGTACTTCTAACCAGGGAAAACGCCATAGTATGT
GATCTACATATCCTGAGTTCTCTCCATCGGCAAGCAGGTTGGAGATATGT
TGCGATTGTTTCTTCTGCGTCGGAGCTCTACACGATTGCAAAGAAAGTAC
GAACAACGTCAAATATTCACGCTGTCAACTTTGTTGTTATAGGTATACAA
TGTGATCTGGCCCAAGGCGTGTCACTGAGAACTGCCGCTCTGAAGGAACT
AGATGCAGCTGGAGTAATTCTCGTGGAAGAAAGTGATGGTCGCGGTCAAA
AGGTCTTCCAAGATATTTTACGCGTCTGGCGCGAGCACAAAGATGACGAG
TCCATGTTGTCTGTATGGGGCGAGGCCAGCCTTGTCAGCGCGAAAGACGT
AATTATTCCCCCAAGATGGGATTCGGAAGGCAAGATTAGGGCTGTGGTTG
ATGCTGCCGGTGAGAGCTACGAAGCACTTTTGGAGGCTTCATCCTGGGGA
ACAGAAATTGAACCGCCCAAAGTAGACATGCCAACCGAGCAATCGAGGGT
CGAGCGCCAGGAGCTTGGAAAGCGGAAGAAAGAAGAGTATTTGCGCAACT
TCGAGGCGTGGACCACGCGTATGCAACAAGTAGCCGAAAAGGCCAAGCAG
AATCCAGGAAACGATGTCACCCAAGTTGATGGTGCAGAAGCAAACGAGAA
AACACCAGCGCAAGCAGATTTCTTTCAAAAGTTATTGGCAGGGACCAGAT
AG
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