Ggra2132.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2132.t1
Unique Name	Ggra2132.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:388371..389300 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704198.1
PFAMs	NAD_binding_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20784
KEGG Pathway	ko00514,map00514
Evalue	3.76e-54
EggNOG OGs	COG0543@1\|root,2QQ7C@2759\|Eukaryota
Description	Oxidoreductase NAD-binding domain
COG category	CH
CAZy	GT77
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2132	Ggra2132	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 388371..389300 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2132.t1.stop1	Ggra2132.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 388371..388373 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2132.t1.CDS1	Ggra2132.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 388371..389300 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2132.t1.exon1	Ggra2132.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 388371..389300 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2132.t1.start1	Ggra2132.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 389298..389300 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2132.t1	Ggra2132.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 388371..389300 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:388371..389300-
coding sequence from alignment at tig00000900_pilon:388371..389300-

mRNA sequence

>Ggra2132.t1 ID=Ggra2132.t1|Name=Ggra2132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MHKAQSAFVTSTPVAIRRRAFSLCRVLPAYTRPTTRPTSRPQTTLPLRRT
IPVASVKPQQETAWNRVKVVENSFHCEGHRYIVVNVGVSGEKGTLIDSYR
VPGMFVQMRASPDEKPSFFAISCAPNVAGYFEFLIKESENSKSICAIKEG
NMVEMSPVMGKGFPMSKLKMAEYDEENKPKDILLFATGSGIAPIRAAIES
SLNGLDVPLRRKVKLFYGARYPNRMPYMERFAMWQVDGVEIIPVMSRPED
AFDKWDGETGYIQDVLKKVGVDSPNQTAALLCGVKGMTEDVTSLLKEAGV
PGDRILLNF*

spliced messenger RNA

>Ggra2132.t1 ID=Ggra2132.t1|Name=Ggra2132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000900_pilon:388371..389300- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAAGGCCCAAAGTGCGTTTGTGACTTCGACTCCCGTTGCAATCCG
ACGACGCGCCTTTTCACTATGTCGCGTTCTGCCGGCGTACACGAGACCTA
CAACTCGCCCTACGAGTCGTCCTCAAACCACACTTCCTTTGCGTCGCACA
ATCCCCGTCGCCTCCGTCAAGCCTCAGCAAGAAACCGCATGGAATCGTGT
TAAAGTGGTTGAGAATTCCTTTCACTGTGAAGGTCACCGATATATTGTCG
TCAATGTCGGTGTAAGTGGGGAGAAAGGTACGCTAATCGATTCATATCGA
GTTCCCGGCATGTTTGTGCAAATGCGAGCTTCTCCCGACGAAAAACCTTC
CTTCTTCGCCATATCATGTGCACCGAACGTAGCCGGCTACTTCGAGTTTC
TCATAAAGGAATCTGAGAACTCTAAGAGTATTTGCGCTATCAAGGAAGGG
AATATGGTTGAAATGTCCCCAGTTATGGGCAAAGGATTCCCCATGTCGAA
GCTCAAAATGGCGGAGTACGATGAAGAAAACAAGCCGAAGGACATATTGC
TTTTCGCTACAGGGTCCGGAATTGCACCCATACGAGCTGCAATAGAGTCA
TCACTGAATGGACTCGATGTGCCACTGCGGAGAAAAGTAAAGCTATTCTA
TGGTGCTAGGTATCCAAATAGAATGCCATATATGGAAAGATTCGCCATGT
GGCAAGTGGACGGCGTAGAGATTATACCAGTCATGTCCAGACCTGAAGAC
GCATTTGATAAATGGGATGGGGAAACGGGTTACATTCAGGATGTCTTAAA
GAAAGTAGGCGTTGATAGTCCAAACCAAACAGCAGCTTTGCTTTGTGGGG
TGAAGGGCATGACCGAGGATGTCACAAGTTTATTGAAAGAAGCCGGTGTT
CCAGGGGACCGAATTCTTCTCAACTTCTGA

protein sequence of Ggra2132.t1

>Ggra2132.t1 ID=Ggra2132.t1|Name=Ggra2132.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MHKAQSAFVTSTPVAIRRRAFSLCRVLPAYTRPTTRPTSRPQTTLPLRRT
IPVASVKPQQETAWNRVKVVENSFHCEGHRYIVVNVGVSGEKGTLIDSYR
VPGMFVQMRASPDEKPSFFAISCAPNVAGYFEFLIKESENSKSICAIKEG
NMVEMSPVMGKGFPMSKLKMAEYDEENKPKDILLFATGSGIAPIRAAIES
SLNGLDVPLRRKVKLFYGARYPNRMPYMERFAMWQVDGVEIIPVMSRPED
AFDKWDGETGYIQDVLKKVGVDSPNQTAALLCGVKGMTEDVTSLLKEAGV
PGDRILLNF*

mRNA from alignment at tig00000900_pilon:388371..389300-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2132.t1 ID=Ggra2132.t1|Name=Ggra2132.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000900_pilon:388371..389300- (Gracilaria gracilis GNS1m male)
ATGCACAAGGCCCAAAGTGCGTTTGTGACTTCGACTCCCGTTGCAATCCG
ACGACGCGCCTTTTCACTATGTCGCGTTCTGCCGGCGTACACGAGACCTA
CAACTCGCCCTACGAGTCGTCCTCAAACCACACTTCCTTTGCGTCGCACA
ATCCCCGTCGCCTCCGTCAAGCCTCAGCAAGAAACCGCATGGAATCGTGT
TAAAGTGGTTGAGAATTCCTTTCACTGTGAAGGTCACCGATATATTGTCG
TCAATGTCGGTGTAAGTGGGGAGAAAGGTACGCTAATCGATTCATATCGA
GTTCCCGGCATGTTTGTGCAAATGCGAGCTTCTCCCGACGAAAAACCTTC
CTTCTTCGCCATATCATGTGCACCGAACGTAGCCGGCTACTTCGAGTTTC
TCATAAAGGAATCTGAGAACTCTAAGAGTATTTGCGCTATCAAGGAAGGG
AATATGGTTGAAATGTCCCCAGTTATGGGCAAAGGATTCCCCATGTCGAA
GCTCAAAATGGCGGAGTACGATGAAGAAAACAAGCCGAAGGACATATTGC
TTTTCGCTACAGGGTCCGGAATTGCACCCATACGAGCTGCAATAGAGTCA
TCACTGAATGGACTCGATGTGCCACTGCGGAGAAAAGTAAAGCTATTCTA
TGGTGCTAGGTATCCAAATAGAATGCCATATATGGAAAGATTCGCCATGT
GGCAAGTGGACGGCGTAGAGATTATACCAGTCATGTCCAGACCTGAAGAC
GCATTTGATAAATGGGATGGGGAAACGGGTTACATTCAGGATGTCTTAAA
GAAAGTAGGCGTTGATAGTCCAAACCAAACAGCAGCTTTGCTTTGTGGGG
TGAAGGGCATGACCGAGGATGTCACAAGTTTATTGAAAGAAGCCGGTGTT
CCAGGGGACCGAATTCTTCTCAACTTCTGA

Coding sequence (CDS) from alignment at tig00000900_pilon:388371..389300-

>Ggra2132.t1 ID=Ggra2132.t1|Name=Ggra2132.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000900_pilon:388371..389300- (Gracilaria gracilis GNS1m male)
ATGCACAAGGCCCAAAGTGCGTTTGTGACTTCGACTCCCGTTGCAATCCG
ACGACGCGCCTTTTCACTATGTCGCGTTCTGCCGGCGTACACGAGACCTA
CAACTCGCCCTACGAGTCGTCCTCAAACCACACTTCCTTTGCGTCGCACA
ATCCCCGTCGCCTCCGTCAAGCCTCAGCAAGAAACCGCATGGAATCGTGT
TAAAGTGGTTGAGAATTCCTTTCACTGTGAAGGTCACCGATATATTGTCG
TCAATGTCGGTGTAAGTGGGGAGAAAGGTACGCTAATCGATTCATATCGA
GTTCCCGGCATGTTTGTGCAAATGCGAGCTTCTCCCGACGAAAAACCTTC
CTTCTTCGCCATATCATGTGCACCGAACGTAGCCGGCTACTTCGAGTTTC
TCATAAAGGAATCTGAGAACTCTAAGAGTATTTGCGCTATCAAGGAAGGG
AATATGGTTGAAATGTCCCCAGTTATGGGCAAAGGATTCCCCATGTCGAA
GCTCAAAATGGCGGAGTACGATGAAGAAAACAAGCCGAAGGACATATTGC
TTTTCGCTACAGGGTCCGGAATTGCACCCATACGAGCTGCAATAGAGTCA
TCACTGAATGGACTCGATGTGCCACTGCGGAGAAAAGTAAAGCTATTCTA
TGGTGCTAGGTATCCAAATAGAATGCCATATATGGAAAGATTCGCCATGT
GGCAAGTGGACGGCGTAGAGATTATACCAGTCATGTCCAGACCTGAAGAC
GCATTTGATAAATGGGATGGGGAAACGGGTTACATTCAGGATGTCTTAAA
GAAAGTAGGCGTTGATAGTCCAAACCAAACAGCAGCTTTGCTTTGTGGGG
TGAAGGGCATGACCGAGGATGTCACAAGTTTATTGAAAGAAGCCGGTGTT
CCAGGGGACCGAATTCTTCTCAACTTCTGA