Ggra2117.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2117.t1
Unique NameGgra2117.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:332710..333479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S269_33V6.1
PFAMsSYS1
Max annot lvl35493|Streptophyta
KEGG koko:K20318
Evalue6.4e-25
EggNOG OGsKOG4697@1|root,KOG4697@2759|Eukaryota,37U39@33090|Viridiplantae,3GI4T@35493|Streptophyta
DescriptionProtein SYS1 homolog
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2117Ggra2117Gracilaria gracilis GNS1m malegenetig00000900_pilon 332710..333479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2117.t1Ggra2117.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 332710..333479 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2117.t1.stop1Ggra2117.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 332710..332712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2117.t1.CDS1Ggra2117.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 332710..332742 -
Ggra2117.t1.CDS2Ggra2117.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 332889..333479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2117.t1.exon1Ggra2117.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 332710..332742 -
Ggra2117.t1.exon2Ggra2117.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 332889..333479 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2117.t1.intron1Ggra2117.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 332743..332888 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2117.t1.start1Ggra2117.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 333477..333479 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2117.t1 ID=Ggra2117.t1|Name=Ggra2117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=208bp
MAVNGSFYGRERFDPLLILAQIVLLQACFYTSYLVLLVVFNYATGTSTSI
TDQIFNHSYITLRHFPGWVTCTALLISACGPAAIAFVALVGRAKRCIDFA
CTLFISHIIATTVHSGFPNTFMWWLLNMIATAGLATVGEAISLRLELREI
AVPRDESRRSDNAKSQPIDLEAALNHESQQPPSSTSLETESVALTQPHLF
ISAMLNI*
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spliced messenger RNA

>Ggra2117.t1 ID=Ggra2117.t1|Name=Ggra2117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000900_pilon:332710..333479- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCAACGGCTCTTTCTACGGGCGTGAGCGCTTCGATCCATTACT
CATTCTCGCCCAAATCGTGCTGCTTCAAGCCTGTTTCTACACCTCGTACC
TCGTCTTACTCGTGGTCTTCAACTATGCCACCGGCACCTCCACCTCCATC
ACCGACCAGATTTTCAACCATTCTTACATCACTCTGCGACACTTTCCCGG
CTGGGTCACCTGTACAGCGCTGCTCATCTCTGCATGCGGCCCGGCTGCCA
TCGCCTTCGTCGCGCTAGTAGGCCGTGCAAAGCGCTGCATCGACTTTGCC
TGCACGCTGTTCATCTCGCATATCATTGCAACAACCGTGCATTCCGGTTT
TCCGAATACCTTCATGTGGTGGCTGCTCAACATGATTGCCACCGCCGGCT
TGGCCACCGTGGGTGAGGCCATTAGCTTGCGGCTTGAACTCCGCGAAATT
GCCGTGCCAAGAGACGAATCTAGGCGAAGCGATAACGCAAAGAGCCAACC
TATCGATCTCGAGGCCGCTTTGAACCATGAATCGCAACAGCCACCTTCTT
CTACGTCGCTCGAAACTGAATCTGTCGCCCTTACACAACCTCACTTGTTC
ATTTCCGCTATGCTCAACATTTAA
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protein sequence of Ggra2117.t1

>Ggra2117.t1 ID=Ggra2117.t1|Name=Ggra2117.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=208bp
MAVNGSFYGRERFDPLLILAQIVLLQACFYTSYLVLLVVFNYATGTSTSI
TDQIFNHSYITLRHFPGWVTCTALLISACGPAAIAFVALVGRAKRCIDFA
CTLFISHIIATTVHSGFPNTFMWWLLNMIATAGLATVGEAISLRLELREI
AVPRDESRRSDNAKSQPIDLEAALNHESQQPPSSTSLETESVALTQPHLF
ISAMLNI*
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mRNA from alignment at tig00000900_pilon:332710..333479-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2117.t1 ID=Ggra2117.t1|Name=Ggra2117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=770bp|location=Sequence derived from alignment at tig00000900_pilon:332710..333479- (Gracilaria gracilis GNS1m male)
ATGGCCGTCAACGGCTCTTTCTACGGGCGTGAGCGCTTCGATCCATTACT
CATTCTCGCCCAAATCGTGCTGCTTCAAGCCTGTTTCTACACCTCGTACC
TCGTCTTACTCGTGGTCTTCAACTATGCCACCGGCACCTCCACCTCCATC
ACCGACCAGATTTTCAACCATTCTTACATCACTCTGCGACACTTTCCCGG
CTGGGTCACCTGTACAGCGCTGCTCATCTCTGCATGCGGCCCGGCTGCCA
TCGCCTTCGTCGCGCTAGTAGGCCGTGCAAAGCGCTGCATCGACTTTGCC
TGCACGCTGTTCATCTCGCATATCATTGCAACAACCGTGCATTCCGGTTT
TCCGAATACCTTCATGTGGTGGCTGCTCAACATGATTGCCACCGCCGGCT
TGGCCACCGTGGGTGAGGCCATTAGCTTGCGGCTTGAACTCCGCGAAATT
GCCGTGCCAAGAGACGAATCTAGGCGAAGCGATAACGCAAAGAGCCAACC
TATCGATCTCGAGGCCGCTTTGAACCATGAATCGCAACAGCCACCTTCTT
CTACGTCGCTCGAAACTGAATCTGTCGCCCTTACACAACCTGTATGATAA
CTTTTTTTTTATACAACATCGCGTGCTCTGAACCACGCTTGCTGTCTCTC
TTAGCTGCGCTGGTGGAACTGTGCTCCGCCTGTTGCATCTCTCCACTCTT
GTTATCTATATTTCTAACTTTGCGTCCTGTAAAGCAGCACTTGTTCATTT
CCGCTATGCTCAACATTTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:332710..333479-

>Ggra2117.t1 ID=Ggra2117.t1|Name=Ggra2117.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00000900_pilon:332710..333479- (Gracilaria gracilis GNS1m male)
ATGGCCGTCAACGGCTCTTTCTACGGGCGTGAGCGCTTCGATCCATTACT
CATTCTCGCCCAAATCGTGCTGCTTCAAGCCTGTTTCTACACCTCGTACC
TCGTCTTACTCGTGGTCTTCAACTATGCCACCGGCACCTCCACCTCCATC
ACCGACCAGATTTTCAACCATTCTTACATCACTCTGCGACACTTTCCCGG
CTGGGTCACCTGTACAGCGCTGCTCATCTCTGCATGCGGCCCGGCTGCCA
TCGCCTTCGTCGCGCTAGTAGGCCGTGCAAAGCGCTGCATCGACTTTGCC
TGCACGCTGTTCATCTCGCATATCATTGCAACAACCGTGCATTCCGGTTT
TCCGAATACCTTCATGTGGTGGCTGCTCAACATGATTGCCACCGCCGGCT
TGGCCACCGTGGGTGAGGCCATTAGCTTGCGGCTTGAACTCCGCGAAATT
GCCGTGCCAAGAGACGAATCTAGGCGAAGCGATAACGCAAAGAGCCAACC
TATCGATCTCGAGGCCGCTTTGAACCATGAATCGCAACAGCCACCTTCTT
CTACGTCGCTCGAAACTGAATCTGTCGCCCTTACACAACCTCACTTGTTC
ATTTCCGCTATGCTCAACATTTAA
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