Ggra2061.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2061.t1
Unique NameGgra2061.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:15915..16634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_08878T0
PFAMsCarb_kinase
Max annot lvl4751|Fungi
KEGG koko:K17757
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0019362,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0047453,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901360,GO:1901564
Evalue6.74e-23
EggNOG OGsCOG0063@1|root,KOG3974@2759|Eukaryota,38FU3@33154|Opisthokonta,3NUFF@4751|Fungi
EC4.2.1.93
DescriptionCatalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
COG categoryG
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2061Ggra2061Gracilaria gracilis GNS1m malegenetig00000900_pilon 15915..16634 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2061.t1.start1Ggra2061.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 15915..15917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2061.t1.CDS1Ggra2061.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 15915..16634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2061.t1.exon1Ggra2061.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 15915..16634 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2061.t1.stop1Ggra2061.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 16632..16634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2061.t1Ggra2061.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 15915..16634 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2061.t1 ID=Ggra2061.t1|Name=Ggra2061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MVYPGLHYLADEQLDPLGRADAVVVGPGLGRGDDAVTAFERVLRRALADD
MPLVVDADALWMLAQRAELRRLLAHARPQRAGALLLTPNAPELRRLLRAT
HARSAAALAAALGAESAAALGAESAAAPVVVVAKARVDAVTARTLRASVA
DAGALKRVGGQGDVLAGLLGVFALWMTRGVRHDADASARQRAAVAAAVAA
CTVTRRAARMAFLRHGRAMVASDALPLLRDALRSVLRDG*
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spliced messenger RNA

>Ggra2061.t1 ID=Ggra2061.t1|Name=Ggra2061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000900_pilon:15915..16634+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTACCCCGGGCTGCACTACCTGGCCGACGAGCAGCTGGACCCGCT
CGGGCGCGCCGACGCGGTGGTGGTCGGGCCCGGGCTCGGGCGCGGCGACG
ACGCGGTGACGGCGTTCGAACGCGTGTTGAGACGCGCGTTGGCGGACGAT
ATGCCGCTGGTGGTGGACGCCGACGCGCTGTGGATGCTCGCGCAGCGCGC
AGAGCTGAGGCGGCTACTGGCGCACGCGCGGCCGCAGCGCGCCGGCGCGC
TGCTGCTCACGCCCAACGCGCCGGAGCTGCGGCGGCTGCTGCGCGCCACG
CACGCGCGCTCGGCGGCCGCGCTGGCGGCCGCGCTGGGCGCCGAGAGCGC
GGCCGCGCTGGGCGCCGAGAGCGCGGCCGCGCCGGTGGTGGTGGTGGCCA
AGGCGCGCGTGGACGCGGTGACGGCGCGCACGCTGCGCGCAAGCGTGGCG
GACGCCGGCGCGCTCAAGCGCGTGGGCGGCCAGGGCGACGTGCTGGCCGG
GCTGCTGGGCGTGTTTGCGCTGTGGATGACGCGCGGCGTGCGCCACGACG
CGGACGCTTCGGCGCGACAGCGCGCCGCCGTGGCGGCGGCCGTGGCGGCG
TGCACCGTCACCAGACGCGCCGCGCGCATGGCGTTCCTGCGACATGGCCG
CGCTATGGTGGCGTCCGACgcgctgccgctgctgcgcgacgcgctgcgca
gcgTGTTGCGCGATGGATAG
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protein sequence of Ggra2061.t1

>Ggra2061.t1 ID=Ggra2061.t1|Name=Ggra2061.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MVYPGLHYLADEQLDPLGRADAVVVGPGLGRGDDAVTAFERVLRRALADD
MPLVVDADALWMLAQRAELRRLLAHARPQRAGALLLTPNAPELRRLLRAT
HARSAAALAAALGAESAAALGAESAAAPVVVVAKARVDAVTARTLRASVA
DAGALKRVGGQGDVLAGLLGVFALWMTRGVRHDADASARQRAAVAAAVAA
CTVTRRAARMAFLRHGRAMVASDALPLLRDALRSVLRDG*
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mRNA from alignment at tig00000900_pilon:15915..16634+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2061.t1 ID=Ggra2061.t1|Name=Ggra2061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000900_pilon:15915..16634+ (Gracilaria gracilis GNS1m male)
ATGGTGTACCCCGGGCTGCACTACCTGGCCGACGAGCAGCTGGACCCGCT
CGGGCGCGCCGACGCGGTGGTGGTCGGGCCCGGGCTCGGGCGCGGCGACG
ACGCGGTGACGGCGTTCGAACGCGTGTTGAGACGCGCGTTGGCGGACGAT
ATGCCGCTGGTGGTGGACGCCGACGCGCTGTGGATGCTCGCGCAGCGCGC
AGAGCTGAGGCGGCTACTGGCGCACGCGCGGCCGCAGCGCGCCGGCGCGC
TGCTGCTCACGCCCAACGCGCCGGAGCTGCGGCGGCTGCTGCGCGCCACG
CACGCGCGCTCGGCGGCCGCGCTGGCGGCCGCGCTGGGCGCCGAGAGCGC
GGCCGCGCTGGGCGCCGAGAGCGCGGCCGCGCCGGTGGTGGTGGTGGCCA
AGGCGCGCGTGGACGCGGTGACGGCGCGCACGCTGCGCGCAAGCGTGGCG
GACGCCGGCGCGCTCAAGCGCGTGGGCGGCCAGGGCGACGTGCTGGCCGG
GCTGCTGGGCGTGTTTGCGCTGTGGATGACGCGCGGCGTGCGCCACGACG
CGGACGCTTCGGCGCGACAGCGCGCCGCCGTGGCGGCGGCCGTGGCGGCG
TGCACCGTCACCAGACGCGCCGCGCGCATGGCGTTCCTGCGACATGGCCG
CGCTATGGTGGCGTCCGACgcgctgccgctgctgcgcgacgcgctgcgca
gcgTGTTGCGCGATGGATAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:15915..16634+

>Ggra2061.t1 ID=Ggra2061.t1|Name=Ggra2061.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000900_pilon:15915..16634+ (Gracilaria gracilis GNS1m male)
ATGGTGTACCCCGGGCTGCACTACCTGGCCGACGAGCAGCTGGACCCGCT
CGGGCGCGCCGACGCGGTGGTGGTCGGGCCCGGGCTCGGGCGCGGCGACG
ACGCGGTGACGGCGTTCGAACGCGTGTTGAGACGCGCGTTGGCGGACGAT
ATGCCGCTGGTGGTGGACGCCGACGCGCTGTGGATGCTCGCGCAGCGCGC
AGAGCTGAGGCGGCTACTGGCGCACGCGCGGCCGCAGCGCGCCGGCGCGC
TGCTGCTCACGCCCAACGCGCCGGAGCTGCGGCGGCTGCTGCGCGCCACG
CACGCGCGCTCGGCGGCCGCGCTGGCGGCCGCGCTGGGCGCCGAGAGCGC
GGCCGCGCTGGGCGCCGAGAGCGCGGCCGCGCCGGTGGTGGTGGTGGCCA
AGGCGCGCGTGGACGCGGTGACGGCGCGCACGCTGCGCGCAAGCGTGGCG
GACGCCGGCGCGCTCAAGCGCGTGGGCGGCCAGGGCGACGTGCTGGCCGG
GCTGCTGGGCGTGTTTGCGCTGTGGATGACGCGCGGCGTGCGCCACGACG
CGGACGCTTCGGCGCGACAGCGCGCCGCCGTGGCGGCGGCCGTGGCGGCG
TGCACCGTCACCAGACGCGCCGCGCGCATGGCGTTCCTGCGACATGGCCG
CGCTATGGTGGCGTCCGACgcgctgccgctgctgcgcgacgcgctgcgca
gcgTGTTGCGCGATGGATAG
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