Ggra2038.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2038.t1
Unique NameGgra2038.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:122409..125076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8090.ENSORLP00000004585
Preferred nameRHEB
PFAMsRas
Max annot lvl33208|Metazoa
KEGG koko:K07208
KEGG Pathwayko04072,ko04140,ko04150,ko04151,ko04152,ko04211,ko04218,ko04714,ko04910,ko04919,ko05165,ko05231,map04072,map04140,map04150,map04151,map04152,map04211,map04218,map04714,map04910,map04919,map05165,map05231
GOsGO:0000082,GO:0000166,GO:0000278,GO:0000287,GO:0000323,GO:0001558,GO:0001763,GO:0001882,GO:0001883,GO:0002009,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005975,GO:0006417,GO:0006629,GO:0006950,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007264,GO:0007275,GO:0007399,GO:0007424,GO:0007430,GO:0008104,GO:0008150,GO:0008152,GO:0008286,GO:0008361,GO:0008582,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0014013,GO:0014015,GO:0016020,GO:0016043,GO:0016241,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022402,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030307,GO:0030425,GO:0030856,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031344,GO:0031346,GO:0031667,GO:0032006,GO:0032007,GO:0032008,GO:0032101,GO:0032103,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0035239,GO:0035264,GO:0035295,GO:0035556,GO:0035639,GO:0036094,GO:0036477,GO:0040007,GO:0040008,GO:0040012,GO:0040017,GO:0042221,GO:0042592,GO:0042594,GO:0042632,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0044087,GO:0044089,GO:0044238,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045176,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045685,GO:0045687,GO:0045727,GO:0045786,GO:0045793,GO:0045887,GO:0045927,GO:0046872,GO:0048167,GO:0048168,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048638,GO:0048639,GO:0048699,GO:0048713,GO:0048714,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0050896,GO:0050920,GO:0050921,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0055088,GO:0055092,GO:0060255,GO:0060284,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0090069,GO:0090070,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0098588,GO:0098805,GO:0098852,GO:0099177,GO:0120025,GO:0120035,GO:0120038,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902533,GO:1902667,GO:1902669,GO:1903047,GO:1903432,GO:1903939,GO:1903940,GO:1904263,GO:1904396,GO:1904398,GO:1990904,GO:2000026,GO:2000074,GO:2000112,GO:2000377
Evalue1.4e-23
EggNOG OGsCOG1100@1|root,KOG0395@2759|Eukaryota,38K8T@33154|Opisthokonta,3BAY8@33208|Metazoa,3CVZJ@33213|Bilateria,489CW@7711|Chordata,48Z57@7742|Vertebrata,49XP8@7898|Actinopterygii
DescriptionRas homolog enriched in brain
COG categoryU
BRITEko00000,ko00001,ko04031
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2038Ggra2038Gracilaria gracilis GNS1m malegenetig00000030_pilon 122409..125076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2038.t1Ggra2038.t1Gracilaria gracilis GNS1m malepolypeptidetig00000030_pilon 122409..125076 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2038.t1.stop1Ggra2038.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000030_pilon 122409..122411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2038.t1.CDS1Ggra2038.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000030_pilon 122409..122537 -
Ggra2038.t1.CDS2Ggra2038.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000030_pilon 122615..122774 -
Ggra2038.t1.CDS3Ggra2038.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000030_pilon 122861..122982 -
Ggra2038.t1.CDS4Ggra2038.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000030_pilon 124588..125076 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2038.t1.exon1Ggra2038.t1.exon1Gracilaria gracilis GNS1m maleexontig00000030_pilon 122409..122537 -
Ggra2038.t1.exon2Ggra2038.t1.exon2Gracilaria gracilis GNS1m maleexontig00000030_pilon 122615..122774 -
Ggra2038.t1.exon3Ggra2038.t1.exon3Gracilaria gracilis GNS1m maleexontig00000030_pilon 122861..122982 -
Ggra2038.t1.exon4Ggra2038.t1.exon4Gracilaria gracilis GNS1m maleexontig00000030_pilon 124588..125076 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2038.t1.intron1Ggra2038.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000030_pilon 122538..122614 -
Ggra2038.t1.intron2Ggra2038.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000030_pilon 122775..122860 -
Ggra2038.t1.intron3Ggra2038.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000030_pilon 122983..124587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2038.t1.start1Ggra2038.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000030_pilon 125074..125076 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2038.t1 ID=Ggra2038.t1|Name=Ggra2038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MSQVDVPNHDAPPPPPSPHTPPVAHLTAAARRLSAATPPPRSPFRLRKRI
AVLGARGVGKSAVAIQCTSGRFESEYMPTCEDSFLWTTVVDGNCYEVTIV
DTDGQDEFPDLGQQYTIGVDGYILMFSVLNETSFHIIKRVHDKLLNTLDV
LQPKGTTELPRVLLKMSAAVNMPDIKSGKLMQIDELDNWNPDERHGSAVR
LIGRVKRVDFSRELVFIEYHGKQLAVHTALIADPVFGRDHIGTMLMCLGE
LERFENELLLRARIVKEMKDVDIDLYDRCLKIRKDFDKNVLNAAERKSS*
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spliced messenger RNA

>Ggra2038.t1 ID=Ggra2038.t1|Name=Ggra2038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000030_pilon:122409..125076- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAAGTGGACGTGCCCAACCACGACGCGCCGCCGCCGCCGCCCTC
GCCGCACACGCCGCCCGTGGCGCACCTCACCGCCGCCGCACGCCGCTTGT
CCGCCGCCACCCCCCCGCCCCGCAGCCCGTTTCGCTTGCGCAAGCGCATC
GCCGTGTTGGGCGCGCGCGGCGTCGGCAAGAGCGCCGTCGCCATTCAGTG
CACCAGCGGCAGGTTCGAGTCCGAGTACATGCCCACCTGCGAGGACTCCT
TCTTGTGGACCACCGTCGTGGACGGCAACTGCTATGAGGTTACCATTGTG
GATACCGATGGTCAGGATGAGTTTCCCGACCTTGGACAGCAGTATACCAT
TGGCGTCGATGGCTACATACTCATGTTTTCCGTGCTCAACGAGACCTCGT
TCCACATAATCAAGCGCGTGCACGACAAGTTGCTAAATACCCTGGACGTG
CTCCAACCCAAGGGAACTACCGAGCTGCCCAGAGTCCTCCTTAAGATGTC
TGCGGCGGTGAATATGCCTGACATAAAGAGCGGGAAGCTGATGCAAATTG
ACGAACTTGACAACTGGAACCCAGATGAACGCCATGGAAGTGCGGTGCGG
CTGATTGGCAGAGTGAAGCGCGTCGATTTCAGCAGGGAGCTGGTCTTCAT
CGAGTATCATGGGAAGCAACTTGCCGTGCATACCGCTCTAATTGCGGACC
CCGTCTTCGGTAGGGATCACATCGGCACGATGTTAATGTGTCTAGGAGAA
CTAGAGAGATTTGAGAATGAGTTGCTCTTGCGAGCCAGGATTGTCAAGGA
AATGAAGGATGTGGATATAGATCTATATGATAGATGCCTGAAGATCAGAA
AGGACTTTGACAAGAATGTCCTAAACGCTGCCGAACGAAAGAGTAGTTAG
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protein sequence of Ggra2038.t1

>Ggra2038.t1 ID=Ggra2038.t1|Name=Ggra2038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MSQVDVPNHDAPPPPPSPHTPPVAHLTAAARRLSAATPPPRSPFRLRKRI
AVLGARGVGKSAVAIQCTSGRFESEYMPTCEDSFLWTTVVDGNCYEVTIV
DTDGQDEFPDLGQQYTIGVDGYILMFSVLNETSFHIIKRVHDKLLNTLDV
LQPKGTTELPRVLLKMSAAVNMPDIKSGKLMQIDELDNWNPDERHGSAVR
LIGRVKRVDFSRELVFIEYHGKQLAVHTALIADPVFGRDHIGTMLMCLGE
LERFENELLLRARIVKEMKDVDIDLYDRCLKIRKDFDKNVLNAAERKSS*
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mRNA from alignment at tig00000030_pilon:122409..125076-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2038.t1 ID=Ggra2038.t1|Name=Ggra2038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2668bp|location=Sequence derived from alignment at tig00000030_pilon:122409..125076- (Gracilaria gracilis GNS1m male)
ATGTCGCAAGTGGACGTGCCCAACCACGACGCGCCGCCGCCGCCGCCCTC
GCCGCACACGCCGCCCGTGGCGCACCTCACCGCCGCCGCACGCCGCTTGT
CCGCCGCCACCCCCCCGCCCCGCAGCCCGTTTCGCTTGCGCAAGCGCATC
GCCGTGTTGGGCGCGCGCGGCGTCGGCAAGAGCGCCGTCGCCATTCAGTG
CACCAGCGGCAGGTTCGAGTCCGAGTACATGCCCACCTGCGAGGACTCCT
TCTTGTGGACCACCGTCGTGGACGGCAACTGCTATGAGGTTACCATTGTG
GATACCGATGGTCAGGATGAGTTTCCCGACCTTGGACAGCAGTATACCAT
TGGCGTCGATGGCTACATACTCATGTTTTCCGTGCTCAACGAGACCTCGT
TCCACATAATCAAGCGCGTGCACGACAAGTTGCTAAATACCCTGGACGTG
CTCCAACCCAAGGGAACTACCGAGCTGCCCAGAGTCCTCGTGGGCAACCA
AGTGGATGACTCCCAAACTCGCCGTGTGTCGCGCATGCTCGCCCAAGAGT
TTGCCGACGAGAACGCCATCCCGTATTACGAGACCTCCGCCCTCACGGGC
GAGAACGTTCAGGATGTGTTCAAGCGTCTGTTGAGAATCATTCACGCCAA
CCAGTTCGATTCTGCCAAGTCCTCTGCCAACGCCATGTCAAAGTCTCAAC
CTCAACAAAACCCCATTTCTTGTAGTGTACAATAGCGACCTCTGTGTCAC
ACCATGAGTGTTTTTTGTCTTTCACTATCTCCGGGTCGGAACGGAAGCTG
TGTATTATATCCACTTTCTTCAGCCTGCCTTCGTTCCTCTTGTTATCGCC
CTTTTTCACATTTTGCTTTGCTTCTTGTGTGCGTCTACGCACCCAACGCG
TGGTAAAGGAAACGAAAACCTTTGTACTTGCTCTAAACATAATGTCATCC
ACATTGTACCCAAGTCATTTAATTCGCGTATGCCAGTATCCGTTGATATG
TTAGAATGGCAACTCCCGTTGTACATGCATTATTGGAGCTCCTATCGATT
CGGAACAGGGAACTGTGAACAGCAGTAGATAAAAAGAGCTCATCTTCTAC
CAAACCCCGGTAGAACCATCGCCGTAGACTTCCACCACCTCCATCCCCTT
CAAACTTCACTCAAACGCAGTTCACGCGGGTGCCTCGTCACAAGTTCCGC
GGTTTGCACCAACGCTTCTTATGCGATATTATGTCGTCTCACGCAAGACA
ATGTGTTCGGTACACCTTGTGTAGTAGAAAGACACATAATATGACCACAC
AGAACGTATTCTTTGTCCATACTCATCTGCAACTCTAGACCACTGATTCT
AAACTCTGCAGCCTCCGTGTGTGCGAAGAAATTCTTACGATTCGTACCCG
AGGAAATGAACGGGCACCTTCAATTCTGGCAACGGGACACAAGAGGCCGC
GATTGTTGAGCGAAGCAAAAAAGATTTGAGATAATGAACCTTCGATGCCC
AACGTAAACGCGGAGCCAAGTTCAGGGAAGGAAGACGAACGGGAGACTTT
TGGGTAGAATACGAAGAAGACGGTCCCGCGTAGAACAAACCTTGAAATAT
CCTTCGAATGATGATGACATTTTTTATTCGTGACCACGGGCCAGTTACAC
AAGGCCGTTGATTGACATTGTCTCCGTTTTCAAGCTCAGGACCTTGCTTG
ATTATCTCTCTCTCTCGTTTATGAGTGCACTAGCATAATCATAACTTGGT
GCAGAACGTTTCTGTTCAAAGAAACGCTCTCTCACTAGAAAAGCCAACAC
TCTAACGGGCCATTTCCAACGCTTGATTATCAGTTGTCAAGCACGGTGCT
ATCAATATACGGCGTCACCGTCCTCTGGCTCATTGGGCCTTCTGAACTGT
TCAAGAAGGGAAAAGGGTGAAGAACAATACCCTTCTACCCAAGTTGCACA
AGTACACGTTTCTTCTTCACTGTGGTCCATAGTTCTCTATTCCGAAACTA
TAGGGTTTTGCTCCGTGTATACCAATAATCTCTCATTTCAGGAAGGCCAA
GCAGTACATGTGTTACGGCTAGAAGATTGTTCCAACGGTAATAGCTTAAG
ATGTCTGCGGCGGTGAATATGCCTGACATAAAGAGCGGGAAGCTGATGCA
AATTGACGAACTTGACAACTGGAACCCAGATGAACGCCATGGAAGTGCGG
TGCGGCTGATTGGCAGGTGCGTCCTAGAAGCTAATAGTTTGCTTGCTGAG
ATTTCGCAAGATCATCTAACTTTTTGACTGCTGTCGTTTTGTGCCGCAAA
AGAGTGAAGCGCGTCGATTTCAGCAGGGAGCTGGTCTTCATCGAGTATCA
TGGGAAGCAACTTGCCGTGCATACCGCTCTAATTGCGGACCCCGTCTTCG
GTAGGGATCACATCGGCACGATGTTAATGTGTCTAGGAGAACTAGAGAGA
TTTGAGAATGAGGTATGTAGAACCCCGTGTGTATGTTTTGTGCATTCCAA
GTCCCATCTAACAGTCTGTTTGAACCGCACTGAAAGCAGTTGCTCTTGCG
AGCCAGGATTGTCAAGGAAATGAAGGATGTGGATATAGATCTATATGATA
GATGCCTGAAGATCAGAAAGGACTTTGACAAGAATGTCCTAAACGCTGCC
GAACGAAAGAGTAGTTAG
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Coding sequence (CDS) from alignment at tig00000030_pilon:122409..125076-

>Ggra2038.t1 ID=Ggra2038.t1|Name=Ggra2038.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000030_pilon:122409..125076- (Gracilaria gracilis GNS1m male)
ATGTCGCAAGTGGACGTGCCCAACCACGACGCGCCGCCGCCGCCGCCCTC
GCCGCACACGCCGCCCGTGGCGCACCTCACCGCCGCCGCACGCCGCTTGT
CCGCCGCCACCCCCCCGCCCCGCAGCCCGTTTCGCTTGCGCAAGCGCATC
GCCGTGTTGGGCGCGCGCGGCGTCGGCAAGAGCGCCGTCGCCATTCAGTG
CACCAGCGGCAGGTTCGAGTCCGAGTACATGCCCACCTGCGAGGACTCCT
TCTTGTGGACCACCGTCGTGGACGGCAACTGCTATGAGGTTACCATTGTG
GATACCGATGGTCAGGATGAGTTTCCCGACCTTGGACAGCAGTATACCAT
TGGCGTCGATGGCTACATACTCATGTTTTCCGTGCTCAACGAGACCTCGT
TCCACATAATCAAGCGCGTGCACGACAAGTTGCTAAATACCCTGGACGTG
CTCCAACCCAAGGGAACTACCGAGCTGCCCAGAGTCCTCCTTAAGATGTC
TGCGGCGGTGAATATGCCTGACATAAAGAGCGGGAAGCTGATGCAAATTG
ACGAACTTGACAACTGGAACCCAGATGAACGCCATGGAAGTGCGGTGCGG
CTGATTGGCAGAGTGAAGCGCGTCGATTTCAGCAGGGAGCTGGTCTTCAT
CGAGTATCATGGGAAGCAACTTGCCGTGCATACCGCTCTAATTGCGGACC
CCGTCTTCGGTAGGGATCACATCGGCACGATGTTAATGTGTCTAGGAGAA
CTAGAGAGATTTGAGAATGAGTTGCTCTTGCGAGCCAGGATTGTCAAGGA
AATGAAGGATGTGGATATAGATCTATATGATAGATGCCTGAAGATCAGAA
AGGACTTTGACAAGAATGTCCTAAACGCTGCCGAACGAAAGAGTAGTTAG
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