Ggra1998.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1998.t1
Unique Name	Ggra1998.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	684

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000925_pilon	contig	tig00000925_pilon:113360..115411 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN325CT
Preferred name	ABCB1
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05657
KEGG TC	3.A.1.201
KEGG Pathway	ko02010,map02010
Evalue	1.58e-156
EggNOG OGs	COG1132@1\|root,KOG0058@2759\|Eukaryota
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1998	Ggra1998	Gracilaria gracilis GNS1m male	gene	tig00000925_pilon 113360..115411 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1998.t1.stop1	Ggra1998.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000925_pilon 113360..113362 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1998.t1.CDS1	Ggra1998.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000925_pilon 113360..115411 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1998.t1.exon1	Ggra1998.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000925_pilon 113360..115411 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1998.t1.start1	Ggra1998.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000925_pilon 115409..115411 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1998.t1	Ggra1998.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000925_pilon 113360..115411 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000925_pilon:113360..115411-
coding sequence from alignment at tig00000925_pilon:113360..115411-

mRNA sequence

>Ggra1998.t1 ID=Ggra1998.t1|Name=Ggra1998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp
MHRFIPSLRAAIALQASKQSSAAILRPELRLSGNFRIRGLSSTASTKPLP
LLSRLQRLVSSATKNFNGSSTSSDNPEERLEVSRLLSLARPEKGLLGFAL
SAQLVSASSMMLFPFALGRVVDAVTGTGPTDLDTLVLAMGGVFTVSAIAS
ATRVFAMSLAGSRISRQLRVSLFHSILRQETAFFDERQSGELVNRLSSDV
PLVSRTLTTNLAKILRNGVTTATSLSFILYLSPKLSLVTICSIPPIVGFA
FMFGRTARKLSRQLVDALAAATQVAAERTSAIRTVRTFGAEGFESSRYAK
QVDETYSLAKKVALADALYSGSVQLSAQMSLVGVLWFGGRMVINPLDPMT
IGTLTSFAMYAVNLGVSISAMGTSYGQLLRALGAGFRIFEILDRHPEGRS
STIADQELPADIRHQPFEQNAEETVNGLEPGYNATVRFKNVHFSYPAHPD
SAILKGVDLVIHPGEIVAIAGGSGSGKSTMGALLSRLYEPTSGDVELGNT
PITELDTVWLRNQIAVVSQEPVLFDGSVADNIRYGMGEKIRMDQVHDAAK
TAASHDMIMTLPKQYDTRVGERGSALSGGQRARTALSRALARRPRVLVLD
EHSAALDAESERAVGDALSNAASDLNIAVLTIAHRTSSLRRADRVAVLVE
GRVAELGSYEKLMSNPHSHLRRMLVPEIPGKGG*

spliced messenger RNA

>Ggra1998.t1 ID=Ggra1998.t1|Name=Ggra1998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000925_pilon:113360..115411- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCTTCATTCCGTCACTACGAGCAGCAATAGCGCTACAGGCATC
CAAGCAGTCATCAGCTGCAATTTTGCGCCCTGAACTTCGTCTTTCTGGCA
ATTTCCGGATTCGTGGCTTATCATCTACAGCATCCACTAAGCCACTTCCT
TTACTATCACGCCTTCAGAGACTCGTTTCATCTGCCACCAAGAATTTCAA
TGGATCCTCAACATCGTCAGATAATCCAGAAGAACGGCTGGAGGTATCCC
GCCTTCTTAGTCTTGCTCGTCCCGAGAAAGGGCTTCTTGGCTTCGCACTA
TCAGCTCAACTGGTTTCTGCATCATCCATGATGCTCTTTCCTTTCGCCCT
GGGCCGAGTTGTGGATGCCGTCACCGGCACAGGTCCTACAGATCTAGATA
CTCTTGTCCTAGCTATGGGAGGTGTTTTCACTGTCTCTGCAATTGCATCA
GCTACTCGAGTGTTTGCCATGTCGCTTGCTGGTTCAAGGATTTCGCGCCA
ACTGCGCGTCTCATTGTTTCACTCGATACTGCGACAAGAAACTGCCTTCT
TCGACGAAAGGCAGTCTGGCGAGCTGGTCAATCGCCTATCCTCGGATGTC
CCACTGGTGTCACGGACATTAACAACAAACTTGGCTAAGATTCTAAGAAA
CGGGGTGACTACGGCAACCTCCCTGAGCTTCATCCTGTATTTATCGCCCA
AACTATCCCTCGTTACAATCTGTTCCATCCCCCCAATTGTTGGCTTTGCC
TTTATGTTTGGTCGTACCGCTCGAAAGCTATCTCGCCAACTGGTCGATGC
TCTTGCAGCTGCTACCCAGGTTGCTGCTGAACGCACTAGCGCTATCCGTA
CCGTCCGCACTTTCGGAGCTGAAGGTTTTGAGTCAAGCAGATATGCCAAG
CAAGTAGATGAAACGTACAGTCTTGCAAAGAAAGTAGCGCTTGCAGACGC
ACTGTACTCAGGGTCAGTCCAACTATCCGCGCAGATGTCTCTTGTCGGTG
TTTTATGGTTTGGTGGACGAATGGTTATCAACCCTCTAGATCCGATGACC
ATCGGAACACTAACGTCTTTCGCCATGTACGCAGTCAACCTTGGAGTTTC
TATTTCAGCAATGGGAACGTCATACGGCCAGCTATTGCGGGCCCTGGGAG
CTGGTTTCCGCATCTTTGAGATTCTTGACCGTCATCCAGAAGGTCGGTCG
TCAACTATTGCAGATCAGGAACTCCCCGCGGACATTCGGCACCAACCGTT
TGAACAAAATGCTGAAGAAACCGTGAACGGGCTAGAACCGGGATATAATG
CCACTGTTCGCTTCAAGAACGTACACTTTTCATATCCCGCCCATCCAGAC
AGTGCGATTCTGAAAGGGGTGGATCTAGTAATCCACCCCGGAGAAATAGT
TGCTATTGCGGGAGGAAGCGGGTCTGGAAAGAGTACAATGGGAGCCCTTC
TCTCCCGTTTGTACGAACCCACTTCAGGGGATGTGGAACTAGGAAACACG
CCCATCACGGAACTTGACACAGTATGGCTTAGAAACCAGATTGCAGTCGT
TTCTCAAGAACCGGTTCTATTTGACGGTTCTGTCGCCGATAACATCAGGT
ACGGTATGGGCGAAAAGATTCGTATGGATCAAGTGCACGATGCAGCGAAG
ACTGCTGCCAGTCACGACATGATTATGACTCTGCCAAAGCAATATGATAC
CCGAGTGGGTGAGAGAGGATCAGCCCTTTCAGGTGGGCAGCGAGCTCGAA
CTGCACTTTCTCGAGCTTTAGCGCGACGGCCACGAGTGCTTGTATTAGAC
GAACATAGCGCTGCTCTTGATGCGGAATCGGAACGTGCCGTTGGGGATGC
ACTGTCCAATGCTGCCAGCGACCTCAACATCGCAGTTCTGACAATCGCAC
ATCGAACTAGCTCTTTGCGTCGTGCGGACAGAGTTGCTGTGCTCGTAGAA
GGGCGGGTAGCTGAACTGGGTTCATATGAAAAGCTCATGAGCAATCCTCA
TTCTCATCTTCGCCGAATGCTGGTGCCTGAGATTCCTGGAAAAGGTGGGT
GA

protein sequence of Ggra1998.t1

>Ggra1998.t1 ID=Ggra1998.t1|Name=Ggra1998.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=684bp
MHRFIPSLRAAIALQASKQSSAAILRPELRLSGNFRIRGLSSTASTKPLP
LLSRLQRLVSSATKNFNGSSTSSDNPEERLEVSRLLSLARPEKGLLGFAL
SAQLVSASSMMLFPFALGRVVDAVTGTGPTDLDTLVLAMGGVFTVSAIAS
ATRVFAMSLAGSRISRQLRVSLFHSILRQETAFFDERQSGELVNRLSSDV
PLVSRTLTTNLAKILRNGVTTATSLSFILYLSPKLSLVTICSIPPIVGFA
FMFGRTARKLSRQLVDALAAATQVAAERTSAIRTVRTFGAEGFESSRYAK
QVDETYSLAKKVALADALYSGSVQLSAQMSLVGVLWFGGRMVINPLDPMT
IGTLTSFAMYAVNLGVSISAMGTSYGQLLRALGAGFRIFEILDRHPEGRS
STIADQELPADIRHQPFEQNAEETVNGLEPGYNATVRFKNVHFSYPAHPD
SAILKGVDLVIHPGEIVAIAGGSGSGKSTMGALLSRLYEPTSGDVELGNT
PITELDTVWLRNQIAVVSQEPVLFDGSVADNIRYGMGEKIRMDQVHDAAK
TAASHDMIMTLPKQYDTRVGERGSALSGGQRARTALSRALARRPRVLVLD
EHSAALDAESERAVGDALSNAASDLNIAVLTIAHRTSSLRRADRVAVLVE
GRVAELGSYEKLMSNPHSHLRRMLVPEIPGKGG*

mRNA from alignment at tig00000925_pilon:113360..115411-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1998.t1 ID=Ggra1998.t1|Name=Ggra1998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000925_pilon:113360..115411- (Gracilaria gracilis GNS1m male)
ATGCATCGCTTCATTCCGTCACTACGAGCAGCAATAGCGCTACAGGCATC
CAAGCAGTCATCAGCTGCAATTTTGCGCCCTGAACTTCGTCTTTCTGGCA
ATTTCCGGATTCGTGGCTTATCATCTACAGCATCCACTAAGCCACTTCCT
TTACTATCACGCCTTCAGAGACTCGTTTCATCTGCCACCAAGAATTTCAA
TGGATCCTCAACATCGTCAGATAATCCAGAAGAACGGCTGGAGGTATCCC
GCCTTCTTAGTCTTGCTCGTCCCGAGAAAGGGCTTCTTGGCTTCGCACTA
TCAGCTCAACTGGTTTCTGCATCATCCATGATGCTCTTTCCTTTCGCCCT
GGGCCGAGTTGTGGATGCCGTCACCGGCACAGGTCCTACAGATCTAGATA
CTCTTGTCCTAGCTATGGGAGGTGTTTTCACTGTCTCTGCAATTGCATCA
GCTACTCGAGTGTTTGCCATGTCGCTTGCTGGTTCAAGGATTTCGCGCCA
ACTGCGCGTCTCATTGTTTCACTCGATACTGCGACAAGAAACTGCCTTCT
TCGACGAAAGGCAGTCTGGCGAGCTGGTCAATCGCCTATCCTCGGATGTC
CCACTGGTGTCACGGACATTAACAACAAACTTGGCTAAGATTCTAAGAAA
CGGGGTGACTACGGCAACCTCCCTGAGCTTCATCCTGTATTTATCGCCCA
AACTATCCCTCGTTACAATCTGTTCCATCCCCCCAATTGTTGGCTTTGCC
TTTATGTTTGGTCGTACCGCTCGAAAGCTATCTCGCCAACTGGTCGATGC
TCTTGCAGCTGCTACCCAGGTTGCTGCTGAACGCACTAGCGCTATCCGTA
CCGTCCGCACTTTCGGAGCTGAAGGTTTTGAGTCAAGCAGATATGCCAAG
CAAGTAGATGAAACGTACAGTCTTGCAAAGAAAGTAGCGCTTGCAGACGC
ACTGTACTCAGGGTCAGTCCAACTATCCGCGCAGATGTCTCTTGTCGGTG
TTTTATGGTTTGGTGGACGAATGGTTATCAACCCTCTAGATCCGATGACC
ATCGGAACACTAACGTCTTTCGCCATGTACGCAGTCAACCTTGGAGTTTC
TATTTCAGCAATGGGAACGTCATACGGCCAGCTATTGCGGGCCCTGGGAG
CTGGTTTCCGCATCTTTGAGATTCTTGACCGTCATCCAGAAGGTCGGTCG
TCAACTATTGCAGATCAGGAACTCCCCGCGGACATTCGGCACCAACCGTT
TGAACAAAATGCTGAAGAAACCGTGAACGGGCTAGAACCGGGATATAATG
CCACTGTTCGCTTCAAGAACGTACACTTTTCATATCCCGCCCATCCAGAC
AGTGCGATTCTGAAAGGGGTGGATCTAGTAATCCACCCCGGAGAAATAGT
TGCTATTGCGGGAGGAAGCGGGTCTGGAAAGAGTACAATGGGAGCCCTTC
TCTCCCGTTTGTACGAACCCACTTCAGGGGATGTGGAACTAGGAAACACG
CCCATCACGGAACTTGACACAGTATGGCTTAGAAACCAGATTGCAGTCGT
TTCTCAAGAACCGGTTCTATTTGACGGTTCTGTCGCCGATAACATCAGGT
ACGGTATGGGCGAAAAGATTCGTATGGATCAAGTGCACGATGCAGCGAAG
ACTGCTGCCAGTCACGACATGATTATGACTCTGCCAAAGCAATATGATAC
CCGAGTGGGTGAGAGAGGATCAGCCCTTTCAGGTGGGCAGCGAGCTCGAA
CTGCACTTTCTCGAGCTTTAGCGCGACGGCCACGAGTGCTTGTATTAGAC
GAACATAGCGCTGCTCTTGATGCGGAATCGGAACGTGCCGTTGGGGATGC
ACTGTCCAATGCTGCCAGCGACCTCAACATCGCAGTTCTGACAATCGCAC
ATCGAACTAGCTCTTTGCGTCGTGCGGACAGAGTTGCTGTGCTCGTAGAA
GGGCGGGTAGCTGAACTGGGTTCATATGAAAAGCTCATGAGCAATCCTCA
TTCTCATCTTCGCCGAATGCTGGTGCCTGAGATTCCTGGAAAAGGTGGGT
GA

Coding sequence (CDS) from alignment at tig00000925_pilon:113360..115411-

>Ggra1998.t1 ID=Ggra1998.t1|Name=Ggra1998.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2052bp|location=Sequence derived from alignment at tig00000925_pilon:113360..115411- (Gracilaria gracilis GNS1m male)
ATGCATCGCTTCATTCCGTCACTACGAGCAGCAATAGCGCTACAGGCATC
CAAGCAGTCATCAGCTGCAATTTTGCGCCCTGAACTTCGTCTTTCTGGCA
ATTTCCGGATTCGTGGCTTATCATCTACAGCATCCACTAAGCCACTTCCT
TTACTATCACGCCTTCAGAGACTCGTTTCATCTGCCACCAAGAATTTCAA
TGGATCCTCAACATCGTCAGATAATCCAGAAGAACGGCTGGAGGTATCCC
GCCTTCTTAGTCTTGCTCGTCCCGAGAAAGGGCTTCTTGGCTTCGCACTA
TCAGCTCAACTGGTTTCTGCATCATCCATGATGCTCTTTCCTTTCGCCCT
GGGCCGAGTTGTGGATGCCGTCACCGGCACAGGTCCTACAGATCTAGATA
CTCTTGTCCTAGCTATGGGAGGTGTTTTCACTGTCTCTGCAATTGCATCA
GCTACTCGAGTGTTTGCCATGTCGCTTGCTGGTTCAAGGATTTCGCGCCA
ACTGCGCGTCTCATTGTTTCACTCGATACTGCGACAAGAAACTGCCTTCT
TCGACGAAAGGCAGTCTGGCGAGCTGGTCAATCGCCTATCCTCGGATGTC
CCACTGGTGTCACGGACATTAACAACAAACTTGGCTAAGATTCTAAGAAA
CGGGGTGACTACGGCAACCTCCCTGAGCTTCATCCTGTATTTATCGCCCA
AACTATCCCTCGTTACAATCTGTTCCATCCCCCCAATTGTTGGCTTTGCC
TTTATGTTTGGTCGTACCGCTCGAAAGCTATCTCGCCAACTGGTCGATGC
TCTTGCAGCTGCTACCCAGGTTGCTGCTGAACGCACTAGCGCTATCCGTA
CCGTCCGCACTTTCGGAGCTGAAGGTTTTGAGTCAAGCAGATATGCCAAG
CAAGTAGATGAAACGTACAGTCTTGCAAAGAAAGTAGCGCTTGCAGACGC
ACTGTACTCAGGGTCAGTCCAACTATCCGCGCAGATGTCTCTTGTCGGTG
TTTTATGGTTTGGTGGACGAATGGTTATCAACCCTCTAGATCCGATGACC
ATCGGAACACTAACGTCTTTCGCCATGTACGCAGTCAACCTTGGAGTTTC
TATTTCAGCAATGGGAACGTCATACGGCCAGCTATTGCGGGCCCTGGGAG
CTGGTTTCCGCATCTTTGAGATTCTTGACCGTCATCCAGAAGGTCGGTCG
TCAACTATTGCAGATCAGGAACTCCCCGCGGACATTCGGCACCAACCGTT
TGAACAAAATGCTGAAGAAACCGTGAACGGGCTAGAACCGGGATATAATG
CCACTGTTCGCTTCAAGAACGTACACTTTTCATATCCCGCCCATCCAGAC
AGTGCGATTCTGAAAGGGGTGGATCTAGTAATCCACCCCGGAGAAATAGT
TGCTATTGCGGGAGGAAGCGGGTCTGGAAAGAGTACAATGGGAGCCCTTC
TCTCCCGTTTGTACGAACCCACTTCAGGGGATGTGGAACTAGGAAACACG
CCCATCACGGAACTTGACACAGTATGGCTTAGAAACCAGATTGCAGTCGT
TTCTCAAGAACCGGTTCTATTTGACGGTTCTGTCGCCGATAACATCAGGT
ACGGTATGGGCGAAAAGATTCGTATGGATCAAGTGCACGATGCAGCGAAG
ACTGCTGCCAGTCACGACATGATTATGACTCTGCCAAAGCAATATGATAC
CCGAGTGGGTGAGAGAGGATCAGCCCTTTCAGGTGGGCAGCGAGCTCGAA
CTGCACTTTCTCGAGCTTTAGCGCGACGGCCACGAGTGCTTGTATTAGAC
GAACATAGCGCTGCTCTTGATGCGGAATCGGAACGTGCCGTTGGGGATGC
ACTGTCCAATGCTGCCAGCGACCTCAACATCGCAGTTCTGACAATCGCAC
ATCGAACTAGCTCTTTGCGTCGTGCGGACAGAGTTGCTGTGCTCGTAGAA
GGGCGGGTAGCTGAACTGGGTTCATATGAAAAGCTCATGAGCAATCCTCA
TTCTCATCTTCGCCGAATGCTGGTGCCTGAGATTCCTGGAAAAGGTGGGT
GA